-
1
-
-
78649775528
-
PSMB8 encoding the beta5i proteasome subunit is mutated in joint contractures, muscle atrophy, microcytic anemia, and panniculitis-induced lipodystrophy syndrome
-
2997366 21129723 10.1016/j.ajhg.2010.10.031
-
Agarwal AK, Xing C, DeMartino GN, Mizrachi D, Hernandez MD, Sousa AB, Martinez de Villarreal L, dos Santos HG, Garg A (2010) PSMB8 encoding the beta5i proteasome subunit is mutated in joint contractures, muscle atrophy, microcytic anemia, and panniculitis-induced lipodystrophy syndrome. Am J Hum Genet 87:866-872
-
(2010)
Am J Hum Genet
, vol.87
, pp. 866-872
-
-
Agarwal, A.K.1
Xing, C.2
Demartino, G.N.3
Mizrachi, D.4
Hernandez, M.D.5
Sousa, A.B.6
Martinez De Villarreal, L.7
Dos Santos, H.G.8
Garg, A.9
-
2
-
-
0028037781
-
CDNA cloning and interferon gamma down-regulation of proteasomal subunits X and y
-
8066462 10.1126/science.8066462
-
Akiyama K, Yokota K, Kagawa S, Shimbara N, Tamura T, Akioka H, Nothwang HG, Noda C, Tanaka K, Ichihara A (1994) cDNA cloning and interferon gamma down-regulation of proteasomal subunits X and Y. Science 265:1231-1234
-
(1994)
Science
, vol.265
, pp. 1231-1234
-
-
Akiyama, K.1
Yokota, K.2
Kagawa, S.3
Shimbara, N.4
Tamura, T.5
Akioka, H.6
Nothwang, H.G.7
Noda, C.8
Tanaka, K.9
Ichihara, A.10
-
3
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
390337 15034147 10.1093/nar/gkh340
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
4
-
-
29144519510
-
The evolution of the immunoglobulin heavy chain variable region (IgVH) in Leporids: An unusual case of transspecies polymorphism
-
16247606 10.1007/s00251-005-0022-0
-
Esteves PJ, Lanning D, Ferrand N, Knight KL, Zhai SK, van der Loo W (2005) The evolution of the immunoglobulin heavy chain variable region (IgVH) in Leporids: an unusual case of transspecies polymorphism. Immunogenetics 57(11):874-882
-
(2005)
Immunogenetics
, vol.57
, Issue.11
, pp. 874-882
-
-
Esteves, P.J.1
Lanning, D.2
Ferrand, N.3
Knight, K.L.4
Zhai, S.K.5
Van Der Loo, W.6
-
5
-
-
0028241569
-
Displacement of housekeeping proteasome subunits by MHC encoded LMPs: A newly discovered mechanism for modulating the multicatalytic proteinase complex
-
395220 8045254
-
Früh K, Gossen M, Wang K, Bujard H, Peterson PA, Yang Y (1994) Displacement of housekeeping proteasome subunits by MHC encoded LMPs: a newly discovered mechanism for modulating the multicatalytic proteinase complex. EMBO J 13:3236-3244
-
(1994)
EMBO J
, vol.13
, pp. 3236-3244
-
-
Früh, K.1
Gossen, M.2
Wang, K.3
Bujard, H.4
Peterson, P.A.5
Yang, Y.6
-
6
-
-
84864015192
-
Highly divergent dimorphic alleles of the proteasome subunit beta type-8 (PSMB8) gene of the bichir Polypterus senegalus: Implication for evolution of the PSMB8 gene of jawed vertebrates
-
22322674 10.1007/s00251-012-0602-8
-
Fujito NT, Nonaka M (2012) Highly divergent dimorphic alleles of the proteasome subunit beta type-8 (PSMB8) gene of the bichir Polypterus senegalus: implication for evolution of the PSMB8 gene of jawed vertebrates. Immunogenetics 64:447-453
-
(2012)
Immunogenetics
, vol.64
, pp. 447-453
-
-
Fujito, N.T.1
Nonaka, M.2
-
7
-
-
0030897031
-
Structure of 20S proteasome from yeast at 2.4 A resolution
-
9087403 10.1038/386463a0
-
Groll M, Ditzel L, Lowe J, Stock D, Bochtler M, Bartunik HD, Huber R (1997) Structure of 20S proteasome from yeast at 2.4 A resolution. Nature 386:463-471
-
(1997)
Nature
, vol.386
, pp. 463-471
-
-
Groll, M.1
Ditzel, L.2
Lowe, J.3
Stock, D.4
Bochtler, M.5
Bartunik, H.D.6
Huber, R.7
-
8
-
-
84886782594
-
Dimorphisms of the proteasome subunit beta type 8 gene (PSMB8) of ectothermic tetrapods originated in multiple independent evolutionary events
-
23982299 10.1007/s00251-013-0729-2
-
Huang CH, Tanaka Y, Fujito NT, Nonaka M (2013) Dimorphisms of the proteasome subunit beta type 8 gene (PSMB8) of ectothermic tetrapods originated in multiple independent evolutionary events. Immunogenetics 65:811-821
-
(2013)
Immunogenetics
, vol.65
, pp. 811-821
-
-
Huang, C.H.1
Tanaka, Y.2
Fujito, N.T.3
Nonaka, M.4
-
9
-
-
0034904214
-
A mitogenomic perspective on the basal teleostean phylogeny: Resolving higher-level relationships with longer DNA sequences
-
11476635 10.1006/mpev.2001.0970
-
Inoue JG, Miya M, Tsukamoto K, Nishida M (2001) A mitogenomic perspective on the basal teleostean phylogeny: resolving higher-level relationships with longer DNA sequences. Mol Phylogenet Evol 20(2):275-285
-
(2001)
Mol Phylogenet Evol.
, vol.20
, Issue.2
, pp. 275-285
-
-
Inoue, J.G.1
Miya, M.2
Tsukamoto, K.3
Nishida, M.4
-
10
-
-
77954114695
-
Deep-ocean origin of the fresh water eels
-
Inoue JG, Miya M, Miller MJ, Sado T, Hanel R, Hatooka K, Aoyama J, Minegishi Y, Nishida M, Tsukamoto K (2010) Deep-ocean origin of the fresh water eels. Biol Lett 23;6(3):363-366
-
(2010)
Biol Lett
, vol.23
, Issue.3
, pp. 363-366
-
-
Inoue, J.G.1
Miya, M.2
Miller, M.J.3
Sado, T.4
Hanel, R.5
Hatooka, K.6
Aoyama, J.7
Minegishi, Y.8
Nishida, M.9
Tsukamoto, K.10
-
11
-
-
34548396076
-
MHC, TSP, and the origin of species: From immunogenetics to evolutionary genetics
-
18076327 10.1146/annurev.genet.41.110306.130137
-
Klein J, Sato A, Nikolaidis N (2007) MHC, TSP, and the origin of species: from immunogenetics to evolutionary genetics. Annu Rev Genet 41:281-304
-
(2007)
Annu Rev Genet
, vol.41
, pp. 281-304
-
-
Klein, J.1
Sato, A.2
Nikolaidis, N.3
-
12
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinfomatics 1;23(21):2947-2948
-
(2007)
Bioinfomatics
, vol.1
, Issue.21
, pp. 2947-2948
-
-
Ma, L.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
13
-
-
78650733024
-
Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias
-
3003058 21098669 10.1073/pnas.1012881107
-
Miura F, Tsukamoto K, Mehta RB, Naruse K, Magtoon W, Nonaka M (2010) Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias. Proc Natl Acad Sci USA 107:21599-21604
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 21599-21604
-
-
Miura, F.1
Tsukamoto, K.2
Mehta, R.B.3
Naruse, K.4
Magtoon, W.5
Nonaka, M.6
-
14
-
-
0037215848
-
Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences
-
12470944 10.1016/S1055-7903(02)00332-9
-
Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, Satoh TP, Yamaguchi M, Kawaguchi A, Mabuchi K, Shirai SM, Nishida M (2003) Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol 26(1):121-138
-
(2003)
Mol Phylogenet Evol
, vol.26
, Issue.1
, pp. 121-138
-
-
Miya, M.1
Takeshima, H.2
Endo, H.3
Ishiguro, N.B.4
Inoue, J.G.5
Mukai, T.6
Satoh, T.P.7
Yamaguchi, M.8
Kawaguchi, A.9
Mabuchi, K.10
Shirai, S.M.11
Nishida, M.12
-
16
-
-
0034058721
-
Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus, Xenopus
-
10752627 10.1007/s002510050030
-
Nonaka M, Yamada-Namikawa C, Flajnik MF, Du Pasquier L (2000) Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus, Xenopus. Immunogenetics 51:186-192
-
(2000)
Immunogenetics
, vol.51
, pp. 186-192
-
-
Nonaka, M.1
Yamada-Namikawa, C.2
Flajnik, M.F.3
Du Pasquier, L.4
-
17
-
-
0032971227
-
Degradation of cell proteins and the generation of MHC class I-presented peptides
-
10358773 10.1146/annurev.immunol.17.1.739
-
Rock KL, Goldberg AL (1999) Degradation of cell proteins and the generation of MHC class I-presented peptides. Annu Rev Immunol 17:739-779
-
(1999)
Annu Rev Immunol
, vol.17
, pp. 739-779
-
-
Rock, K.L.1
Goldberg, A.L.2
-
18
-
-
0023375195
-
The neighbor-joining method - A new method for reconstructing phylogenetic trees
-
3447015
-
Saitou N, Nei M (1987) The neighbor-joining method - a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
19
-
-
0030297723
-
HLA-DRB intron 1 sequences: Implications for the evolution of HLA-DRB genes and haplotypes
-
8911992 10.1016/S0198-8859(96)00155-3
-
Satta Y, Mayer WE, Klein J (1996) HLA-DRB intron 1 sequences: implications for the evolution of HLA-DRB genes and haplotypes. Hum Immunol 51(1):1-12
-
(1996)
Hum Immunol
, vol.51
, Issue.1
, pp. 1-12
-
-
Satta, Y.1
Mayer, W.E.2
Klein, J.3
-
20
-
-
0034020416
-
PipMaker-a web server for aligning two genomic DNA sequences
-
310868 10779500 10.1101/gr.10.4.577
-
Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W (2000) PipMaker-a web server for aligning two genomic DNA sequences. Genome Res 10(4):577-586
-
(2000)
Genome Res
, vol.10
, Issue.4
, pp. 577-586
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.A.3
Smit, A.4
Riemer, C.5
Bouck, J.6
Gibbs, R.7
Hardison, R.8
Miller, W.9
-
21
-
-
0033578308
-
Fifty-million-year-old polymorphism at an immunoglobulin variable region gene locus in the rabbit evolutionary lineage
-
Su C, Nei M (1999) Fifty-million-year-old polymorphism at an immunoglobulin variable region gene locus in the rabbit evolutionary lineage. Proc Natl Acad Sci USA 17;96 (17):9710-9715
-
(1999)
Proc Natl Acad Sci USA
, vol.17
, Issue.17
, pp. 9710-9715
-
-
Su, C.1
Nei, M.2
-
22
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
3203626 21546353 10.1093/molbev/msr121
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
23
-
-
0031819536
-
The MHC class i ligand-generating system: Roles of immunoproteasomes and the interferon-gamma-inducible proteasome activator PA28
-
9700509 10.1111/j.1600-065X.1998.tb01195.x
-
Tanaka K, Kasahara M (1998) The MHC class I ligand-generating system: roles of immunoproteasomes and the interferon-gamma-inducible proteasome activator PA28. Immunol Rev 163:161-176
-
(1998)
Immunol Rev
, vol.163
, pp. 161-176
-
-
Tanaka, K.1
Kasahara, M.2
-
24
-
-
62349099015
-
Dichotomous haplotypic lineages of the immunoproteasome subunit genes, PSMB8 and PSMB10, in the MHC class i region of a Teleost Medaka, Oryzias latipes
-
10.1093/molbev/msn305
-
Tsukamoto K, Sakaizumi M, Hata M, Sawara Y, Eah J, Kim CB, Nonaka M (2009) Dichotomous haplotypic lineages of the immunoproteasome subunit genes, PSMB8 and PSMB10, in the MHC class I region of a Teleost Medaka, Oryzias latipes. Mol Bio Evol 26(4):769-781
-
(2009)
Mol Bio Evol
, vol.26
, Issue.4
, pp. 769-781
-
-
Tsukamoto, K.1
Sakaizumi, M.2
Hata, M.3
Sawara, Y.4
Eah, J.5
Kim, C.B.6
Nonaka, M.7
-
25
-
-
84866926984
-
Long-lived dichotomous lineages of the proteasome subunit beta type 8 (PSMB8) gene surviving more than 500 million years as alleles or paralogs
-
22491037 10.1093/molbev/mss113
-
Tsukamoto K, Miura F, Fujito NT, Yoshizaki G, Nonaka M (2012) Long-lived dichotomous lineages of the proteasome subunit beta type 8 (PSMB8) gene surviving more than 500 million years as alleles or paralogs. Mol Biol Evol 29:3071-3079
-
(2012)
Mol Biol Evol
, vol.29
, pp. 3071-3079
-
-
Tsukamoto, K.1
Miura, F.2
Fujito, N.T.3
Yoshizaki, G.4
Nonaka, M.5
-
26
-
-
0036103598
-
The structure of the mammalian 20S proteasome at 2.75 A resolution
-
12015144 10.1016/S0969-2126(02)00748-7
-
Unno M, Mizushima T, Morimoto Y, Tomisugi Y, Tanaka K, Yasuoka N, Tsukihara T (2002) The structure of the mammalian 20S proteasome at 2.75 A resolution. Structure 10:609-618
-
(2002)
Structure
, vol.10
, pp. 609-618
-
-
Unno, M.1
Mizushima, T.2
Morimoto, Y.3
Tomisugi, Y.4
Tanaka, K.5
Yasuoka, N.6
Tsukihara, T.7
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