메뉴 건너뛰기




Volumn 66, Issue 5, 2014, Pages 325-334

Evolution of dimorphisms of the proteasome subunit beta type 8 gene (PSMB8) in basal ray-finned fish

Author keywords

Balancing selection; Dimorphism; Immunoproteasome; MHC; Ray finned fish

Indexed keywords

PROTEASOME; PROTEASOME SUBUNIT BETA TYPE 8; UNCLASSIFIED DRUG;

EID: 84899944086     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-014-0767-4     Document Type: Article
Times cited : (3)

References (26)
  • 1
    • 78649775528 scopus 로고    scopus 로고
    • PSMB8 encoding the beta5i proteasome subunit is mutated in joint contractures, muscle atrophy, microcytic anemia, and panniculitis-induced lipodystrophy syndrome
    • 2997366 21129723 10.1016/j.ajhg.2010.10.031
    • Agarwal AK, Xing C, DeMartino GN, Mizrachi D, Hernandez MD, Sousa AB, Martinez de Villarreal L, dos Santos HG, Garg A (2010) PSMB8 encoding the beta5i proteasome subunit is mutated in joint contractures, muscle atrophy, microcytic anemia, and panniculitis-induced lipodystrophy syndrome. Am J Hum Genet 87:866-872
    • (2010) Am J Hum Genet , vol.87 , pp. 866-872
    • Agarwal, A.K.1    Xing, C.2    Demartino, G.N.3    Mizrachi, D.4    Hernandez, M.D.5    Sousa, A.B.6    Martinez De Villarreal, L.7    Dos Santos, H.G.8    Garg, A.9
  • 3
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • 390337 15034147 10.1093/nar/gkh340
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 4
    • 29144519510 scopus 로고    scopus 로고
    • The evolution of the immunoglobulin heavy chain variable region (IgVH) in Leporids: An unusual case of transspecies polymorphism
    • 16247606 10.1007/s00251-005-0022-0
    • Esteves PJ, Lanning D, Ferrand N, Knight KL, Zhai SK, van der Loo W (2005) The evolution of the immunoglobulin heavy chain variable region (IgVH) in Leporids: an unusual case of transspecies polymorphism. Immunogenetics 57(11):874-882
    • (2005) Immunogenetics , vol.57 , Issue.11 , pp. 874-882
    • Esteves, P.J.1    Lanning, D.2    Ferrand, N.3    Knight, K.L.4    Zhai, S.K.5    Van Der Loo, W.6
  • 5
    • 0028241569 scopus 로고
    • Displacement of housekeeping proteasome subunits by MHC encoded LMPs: A newly discovered mechanism for modulating the multicatalytic proteinase complex
    • 395220 8045254
    • Früh K, Gossen M, Wang K, Bujard H, Peterson PA, Yang Y (1994) Displacement of housekeeping proteasome subunits by MHC encoded LMPs: a newly discovered mechanism for modulating the multicatalytic proteinase complex. EMBO J 13:3236-3244
    • (1994) EMBO J , vol.13 , pp. 3236-3244
    • Früh, K.1    Gossen, M.2    Wang, K.3    Bujard, H.4    Peterson, P.A.5    Yang, Y.6
  • 6
    • 84864015192 scopus 로고    scopus 로고
    • Highly divergent dimorphic alleles of the proteasome subunit beta type-8 (PSMB8) gene of the bichir Polypterus senegalus: Implication for evolution of the PSMB8 gene of jawed vertebrates
    • 22322674 10.1007/s00251-012-0602-8
    • Fujito NT, Nonaka M (2012) Highly divergent dimorphic alleles of the proteasome subunit beta type-8 (PSMB8) gene of the bichir Polypterus senegalus: implication for evolution of the PSMB8 gene of jawed vertebrates. Immunogenetics 64:447-453
    • (2012) Immunogenetics , vol.64 , pp. 447-453
    • Fujito, N.T.1    Nonaka, M.2
  • 8
    • 84886782594 scopus 로고    scopus 로고
    • Dimorphisms of the proteasome subunit beta type 8 gene (PSMB8) of ectothermic tetrapods originated in multiple independent evolutionary events
    • 23982299 10.1007/s00251-013-0729-2
    • Huang CH, Tanaka Y, Fujito NT, Nonaka M (2013) Dimorphisms of the proteasome subunit beta type 8 gene (PSMB8) of ectothermic tetrapods originated in multiple independent evolutionary events. Immunogenetics 65:811-821
    • (2013) Immunogenetics , vol.65 , pp. 811-821
    • Huang, C.H.1    Tanaka, Y.2    Fujito, N.T.3    Nonaka, M.4
  • 9
    • 0034904214 scopus 로고    scopus 로고
    • A mitogenomic perspective on the basal teleostean phylogeny: Resolving higher-level relationships with longer DNA sequences
    • 11476635 10.1006/mpev.2001.0970
    • Inoue JG, Miya M, Tsukamoto K, Nishida M (2001) A mitogenomic perspective on the basal teleostean phylogeny: resolving higher-level relationships with longer DNA sequences. Mol Phylogenet Evol 20(2):275-285
    • (2001) Mol Phylogenet Evol. , vol.20 , Issue.2 , pp. 275-285
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 11
    • 34548396076 scopus 로고    scopus 로고
    • MHC, TSP, and the origin of species: From immunogenetics to evolutionary genetics
    • 18076327 10.1146/annurev.genet.41.110306.130137
    • Klein J, Sato A, Nikolaidis N (2007) MHC, TSP, and the origin of species: from immunogenetics to evolutionary genetics. Annu Rev Genet 41:281-304
    • (2007) Annu Rev Genet , vol.41 , pp. 281-304
    • Klein, J.1    Sato, A.2    Nikolaidis, N.3
  • 13
    • 78650733024 scopus 로고    scopus 로고
    • Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias
    • 3003058 21098669 10.1073/pnas.1012881107
    • Miura F, Tsukamoto K, Mehta RB, Naruse K, Magtoon W, Nonaka M (2010) Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias. Proc Natl Acad Sci USA 107:21599-21604
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 21599-21604
    • Miura, F.1    Tsukamoto, K.2    Mehta, R.B.3    Naruse, K.4    Magtoon, W.5    Nonaka, M.6
  • 16
    • 0034058721 scopus 로고    scopus 로고
    • Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus, Xenopus
    • 10752627 10.1007/s002510050030
    • Nonaka M, Yamada-Namikawa C, Flajnik MF, Du Pasquier L (2000) Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus, Xenopus. Immunogenetics 51:186-192
    • (2000) Immunogenetics , vol.51 , pp. 186-192
    • Nonaka, M.1    Yamada-Namikawa, C.2    Flajnik, M.F.3    Du Pasquier, L.4
  • 17
    • 0032971227 scopus 로고    scopus 로고
    • Degradation of cell proteins and the generation of MHC class I-presented peptides
    • 10358773 10.1146/annurev.immunol.17.1.739
    • Rock KL, Goldberg AL (1999) Degradation of cell proteins and the generation of MHC class I-presented peptides. Annu Rev Immunol 17:739-779
    • (1999) Annu Rev Immunol , vol.17 , pp. 739-779
    • Rock, K.L.1    Goldberg, A.L.2
  • 18
    • 0023375195 scopus 로고
    • The neighbor-joining method - A new method for reconstructing phylogenetic trees
    • 3447015
    • Saitou N, Nei M (1987) The neighbor-joining method - a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 19
    • 0030297723 scopus 로고    scopus 로고
    • HLA-DRB intron 1 sequences: Implications for the evolution of HLA-DRB genes and haplotypes
    • 8911992 10.1016/S0198-8859(96)00155-3
    • Satta Y, Mayer WE, Klein J (1996) HLA-DRB intron 1 sequences: implications for the evolution of HLA-DRB genes and haplotypes. Hum Immunol 51(1):1-12
    • (1996) Hum Immunol , vol.51 , Issue.1 , pp. 1-12
    • Satta, Y.1    Mayer, W.E.2    Klein, J.3
  • 21
    • 0033578308 scopus 로고    scopus 로고
    • Fifty-million-year-old polymorphism at an immunoglobulin variable region gene locus in the rabbit evolutionary lineage
    • Su C, Nei M (1999) Fifty-million-year-old polymorphism at an immunoglobulin variable region gene locus in the rabbit evolutionary lineage. Proc Natl Acad Sci USA 17;96 (17):9710-9715
    • (1999) Proc Natl Acad Sci USA , vol.17 , Issue.17 , pp. 9710-9715
    • Su, C.1    Nei, M.2
  • 22
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 3203626 21546353 10.1093/molbev/msr121
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 23
    • 0031819536 scopus 로고    scopus 로고
    • The MHC class i ligand-generating system: Roles of immunoproteasomes and the interferon-gamma-inducible proteasome activator PA28
    • 9700509 10.1111/j.1600-065X.1998.tb01195.x
    • Tanaka K, Kasahara M (1998) The MHC class I ligand-generating system: roles of immunoproteasomes and the interferon-gamma-inducible proteasome activator PA28. Immunol Rev 163:161-176
    • (1998) Immunol Rev , vol.163 , pp. 161-176
    • Tanaka, K.1    Kasahara, M.2
  • 24
    • 62349099015 scopus 로고    scopus 로고
    • Dichotomous haplotypic lineages of the immunoproteasome subunit genes, PSMB8 and PSMB10, in the MHC class i region of a Teleost Medaka, Oryzias latipes
    • 10.1093/molbev/msn305
    • Tsukamoto K, Sakaizumi M, Hata M, Sawara Y, Eah J, Kim CB, Nonaka M (2009) Dichotomous haplotypic lineages of the immunoproteasome subunit genes, PSMB8 and PSMB10, in the MHC class I region of a Teleost Medaka, Oryzias latipes. Mol Bio Evol 26(4):769-781
    • (2009) Mol Bio Evol , vol.26 , Issue.4 , pp. 769-781
    • Tsukamoto, K.1    Sakaizumi, M.2    Hata, M.3    Sawara, Y.4    Eah, J.5    Kim, C.B.6    Nonaka, M.7
  • 25
    • 84866926984 scopus 로고    scopus 로고
    • Long-lived dichotomous lineages of the proteasome subunit beta type 8 (PSMB8) gene surviving more than 500 million years as alleles or paralogs
    • 22491037 10.1093/molbev/mss113
    • Tsukamoto K, Miura F, Fujito NT, Yoshizaki G, Nonaka M (2012) Long-lived dichotomous lineages of the proteasome subunit beta type 8 (PSMB8) gene surviving more than 500 million years as alleles or paralogs. Mol Biol Evol 29:3071-3079
    • (2012) Mol Biol Evol , vol.29 , pp. 3071-3079
    • Tsukamoto, K.1    Miura, F.2    Fujito, N.T.3    Yoshizaki, G.4    Nonaka, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.