-
1
-
-
84870370352
-
-
France: WHO, Available: Accessed 15 April 2014, World Health Organization
-
World Health Organization Global Tuberculosis Report 2012 2012, France: WHO, Available: http://who.int/tb/publications/global_report/gtbr12_main.pdf. Accessed 15 April 2014, World Health Organization.
-
(2012)
Global Tuberculosis Report 2012
-
-
-
2
-
-
84871725540
-
Infectious disease: TB's revenge
-
doi:10.1038/493014a, 10.1038/493014a, 23282346
-
Phillips L. Infectious disease: TB's revenge. Nature 2013, 493(7430):14-16. doi:10.1038/493014a, 10.1038/493014a, 23282346.
-
(2013)
Nature
, vol.493
, Issue.7430
, pp. 14-16
-
-
Phillips, L.1
-
3
-
-
0026554848
-
Molecular cloning of a highly repeated DNA element from Mycobacterium tuberculosis and its use as an epidemiological tool
-
265190, 1572981
-
Ross BC, Raios K, Jackson K, Dwyer B. Molecular cloning of a highly repeated DNA element from Mycobacterium tuberculosis and its use as an epidemiological tool. J Clin Microbiol 1992, 30(4):942-946. 265190, 1572981.
-
(1992)
J Clin Microbiol
, vol.30
, Issue.4
, pp. 942-946
-
-
Ross, B.C.1
Raios, K.2
Jackson, K.3
Dwyer, B.4
-
4
-
-
0027498478
-
Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology
-
262774, 8381814
-
van Embden JD, Cave MD, Crawford JT, Dale JW, Eisenach KD, Gicquel B, Hermans P, Martin C, McAdam R, Shinnick TM, Small PM. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol 1993, 31(2):406-409. 262774, 8381814.
-
(1993)
J Clin Microbiol
, vol.31
, Issue.2
, pp. 406-409
-
-
van Embden, J.D.1
Cave, M.D.2
Crawford, J.T.3
Dale, J.W.4
Eisenach, K.D.5
Gicquel, B.6
Hermans, P.7
Martin, C.8
McAdam, R.9
Shinnick, T.M.10
Small, P.M.11
-
5
-
-
0030911908
-
Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
-
229700, 9157152
-
Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, Bunschoten A, Molhuizen H, Shaw R, Goyal M, van Embden J. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997, 35(4):907-914. 229700, 9157152.
-
(1997)
J Clin Microbiol
, vol.35
, Issue.4
, pp. 907-914
-
-
Kamerbeek, J.1
Schouls, L.2
Kolk, A.3
van Agterveld, M.4
van Soolingen, D.5
Kuijper, S.6
Bunschoten, A.7
Molhuizen, H.8
Shaw, R.9
Goyal, M.10
van Embden, J.11
-
6
-
-
0031750390
-
Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats
-
Frothingham R, Meeker-O'Connell WA. Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats. Microbiology 1998, 144(Pt 5):1189-1196.
-
(1998)
Microbiology
, vol.144
, Issue.PART 5
, pp. 1189-1196
-
-
Frothingham, R.1
Meeker-O'Connell, W.A.2
-
7
-
-
0035852711
-
High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology
-
10.1073/pnas.98.4.1901, 29354, 11172048
-
Mazars E, Lesjean S, Banuls AL, Gilbert M, Vincent V, Gicquel B, Tibayrenc M, Locht C, Supply P. High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology. Proc Natl Acad Sci U S A 2001, 98(4):1901-1906. 10.1073/pnas.98.4.1901, 29354, 11172048.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.4
, pp. 1901-1906
-
-
Mazars, E.1
Lesjean, S.2
Banuls, A.L.3
Gilbert, M.4
Vincent, V.5
Gicquel, B.6
Tibayrenc, M.7
Locht, C.8
Supply, P.9
-
8
-
-
79951995822
-
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
-
10.1056/NEJMoa1003176, 21345102
-
Gardy JL, Johnston JC, Ho Sui SJ, Cook VJ, Shah L, Brodkin E, Rempel S, Moore R, Zhao Y, Holt R, Varhol R, Birol I, Lem M, Sharma MK, Elwood K, Jones SJ, Brinkman FS, Brunham RC, Tang P. Whole-genome sequencing and social-network analysis of a tuberculosis outbreak. N Engl J Med 2011, 364(8):730-739. 10.1056/NEJMoa1003176, 21345102.
-
(2011)
N Engl J Med
, vol.364
, Issue.8
, pp. 730-739
-
-
Gardy, J.L.1
Johnston, J.C.2
Ho Sui, S.J.3
Cook, V.J.4
Shah, L.5
Brodkin, E.6
Rempel, S.7
Moore, R.8
Zhao, Y.9
Holt, R.10
Varhol, R.11
Birol, I.12
Lem, M.13
Sharma, M.K.14
Elwood, K.15
Jones, S.J.16
Brinkman, F.S.17
Brunham, R.C.18
Tang, P.19
-
9
-
-
84882707290
-
Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing
-
doi:10.1111/1469-0691.12183. Epub ahead of print
-
Walker TM, Monk P, Grace Smith E, Peto TE. Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing. Clin Microbiol Infect 2013, doi:10.1111/1469-0691.12183. Epub ahead of print.
-
(2013)
Clin Microbiol Infect
-
-
Walker, T.M.1
Monk, P.2
Grace Smith, E.3
Peto, T.E.4
-
10
-
-
84874469388
-
Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study
-
doi:10.1371/journal.pmed.1001387. Epub 2013 Feb 12, 10.1371/journal.pmed.1001387, 3570532, 23424287
-
Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, Kalinowski J, Niemann S. Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study. PLoS Med 2013, 10(2):e1001387. doi:10.1371/journal.pmed.1001387. Epub 2013 Feb 12, 10.1371/journal.pmed.1001387, 3570532, 23424287.
-
(2013)
PLoS Med
, vol.10
, Issue.2
-
-
Roetzer, A.1
Diel, R.2
Kohl, T.A.3
Rückert, C.4
Nübel, U.5
Blom, J.6
Wirth, T.7
Jaenicke, S.8
Schuback, S.9
Rüsch-Gerdes, S.10
Supply, P.11
Kalinowski, J.12
Niemann, S.13
-
11
-
-
84879053244
-
Genetic heterogeneity revealed by sequence analysis of Mycobacterium tuberculosis isolates from extra-pulmonary tuberculosis patients
-
doi:10.1186/1471-2164-14-404, 10.1186/1471-2164-14-404, 3699378, 23773324
-
Das S, Roychowdhury T, Kumar P, Kumar A, Kalra P, Singh J, Singh S, Prasad HK, Bhattacharya A. Genetic heterogeneity revealed by sequence analysis of Mycobacterium tuberculosis isolates from extra-pulmonary tuberculosis patients. BMC Genomics 2013, 14:404. doi:10.1186/1471-2164-14-404, 10.1186/1471-2164-14-404, 3699378, 23773324.
-
(2013)
BMC Genomics
, vol.14
, pp. 404
-
-
Das, S.1
Roychowdhury, T.2
Kumar, P.3
Kumar, A.4
Kalra, P.5
Singh, J.6
Singh, S.7
Prasad, H.K.8
Bhattacharya, A.9
-
12
-
-
0030931719
-
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
-
10.1073/pnas.94.18.9869, 23284, 9275218
-
Sreevatsan S, Pan X, Stockbauer KE, Connell ND, Kreiswirth BN, Whittam TS, Musser JM. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci U S A 1997, 94(18):9869-9874. 10.1073/pnas.94.18.9869, 23284, 9275218.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, Issue.18
, pp. 9869-9874
-
-
Sreevatsan, S.1
Pan, X.2
Stockbauer, K.E.3
Connell, N.D.4
Kreiswirth, B.N.5
Whittam, T.S.6
Musser, J.M.7
-
13
-
-
30744460678
-
Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set
-
[Erratum in: J Bacteriol 2006, 188(8):3162-3163], 10.1128/JB.188.2.759-772.2006, 1347298, 16385065
-
Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbón MH, Bobadilla del Valle M, Fyfe J, García-García L, Rastogi N, Sola C, Zozio T, Guerrero MI, León CI, Crabtree J, Angiuoli S, Eisenach KD, Durmaz R, Joloba ML, Rendón A, Sifuentes-Osornio J, Ponce de León A, Cave MD, Fleischmann R, Whittam TS, Alland D. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol 2006, 188(2):759-772. [Erratum in: J Bacteriol 2006, 188(8):3162-3163], 10.1128/JB.188.2.759-772.2006, 1347298, 16385065.
-
(2006)
J Bacteriol
, vol.188
, Issue.2
, pp. 759-772
-
-
Filliol, I.1
Motiwala, A.S.2
Cavatore, M.3
Qi, W.4
Hazbón, M.H.5
Bobadilla del Valle, M.6
Fyfe, J.7
García-García, L.8
Rastogi, N.9
Sola, C.10
Zozio, T.11
Guerrero, M.I.12
León, C.I.13
Crabtree, J.14
Angiuoli, S.15
Eisenach, K.D.16
Durmaz, R.17
Joloba, M.L.18
Rendón, A.19
Sifuentes-Osornio, J.20
Ponce de León, A.21
Cave, M.D.22
Fleischmann, R.23
Whittam, T.S.24
Alland, D.25
more..
-
14
-
-
33644531249
-
Variable host-pathogen compatibility in Mycobacterium tuberculosis
-
Epub 2006 Feb 13, 10.1073/pnas.0511240103, 1413851, 16477032
-
Gagneux S, DeRiemer K, Van T, Kato-Maeda M, De Jong BC, Narayanan S, Nicol M, Niemann S, Kremer K, Gutierrez MC, Hilty M, Hopewell PC, Small PM. Variable host-pathogen compatibility in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 2006, 103(8):2869-2873. Epub 2006 Feb 13, 10.1073/pnas.0511240103, 1413851, 16477032.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.8
, pp. 2869-2873
-
-
Gagneux, S.1
DeRiemer, K.2
Van, T.3
Kato-Maeda, M.4
De Jong, B.C.5
Narayanan, S.6
Nicol, M.7
Niemann, S.8
Kremer, K.9
Gutierrez, M.C.10
Hilty, M.11
Hopewell, P.C.12
Small, P.M.13
-
15
-
-
77952841173
-
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved
-
doi:10.1038/ng.590. Epub 2010 May 23, 10.1038/ng.590, 2883744,2883744, 20495566
-
Comas I, Chakravartti J, Small PM, Galagan J, Niemann S, Kremer K, Ernst JD, Gagneux S. Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved. Nat Genet 2010, 42(6):498-503. doi:10.1038/ng.590. Epub 2010 May 23, 10.1038/ng.590, 2883744,2883744, 20495566.
-
(2010)
Nat Genet
, vol.42
, Issue.6
, pp. 498-503
-
-
Comas, I.1
Chakravartti, J.2
Small, P.M.3
Galagan, J.4
Niemann, S.5
Kremer, K.6
Ernst, J.D.7
Gagneux, S.8
-
16
-
-
84863619196
-
High resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms
-
doi:10.1371/journal.pone.0039855. Epub 2012 Jul 2, 10.1371/journal.pone.0039855, 3388094, 22768315
-
Homolka S, Projahn M, Feuerriegel S, Ubben T, Diel R, Nübel U, Niemann S. High resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms. PLoS One 2012, 7(7):e39855. doi:10.1371/journal.pone.0039855. Epub 2012 Jul 2, 10.1371/journal.pone.0039855, 3388094, 22768315.
-
(2012)
PLoS One
, vol.7
, Issue.7
-
-
Homolka, S.1
Projahn, M.2
Feuerriegel, S.3
Ubben, T.4
Diel, R.5
Nübel, U.6
Niemann, S.7
-
17
-
-
70450187158
-
Genome analysis of multi- and extensively-drug-resistant tuberculosis from KwaZulu-Natal, South Africa
-
doi:10.1371/journal.pone.0007778, 10.1371/journal.pone.0007778, 2767505, 19890396
-
Ioerger TR, Koo S, No EG, Chen X, Larsen MH, Jacobs WR, Pillay M, Sturm AW, Sacchettini JC. Genome analysis of multi- and extensively-drug-resistant tuberculosis from KwaZulu-Natal, South Africa. PLoS One 2009, 4(11):e7778. doi:10.1371/journal.pone.0007778, 10.1371/journal.pone.0007778, 2767505, 19890396.
-
(2009)
PLoS One
, vol.4
, Issue.11
-
-
Ioerger, T.R.1
Koo, S.2
No, E.G.3
Chen, X.4
Larsen, M.H.5
Jacobs, W.R.6
Pillay, M.7
Sturm, A.W.8
Sacchettini, J.C.9
-
18
-
-
84874229681
-
Comparative genomic analysis of Mycobacterium tuberculosis drug resistant strains from Russia
-
doi:10.1371/journal.pone.0056577. Epub 2013 Feb 20, 10.1371/journal.pone.0056577, 3577857, 23437175
-
Ilina EN, Shitikov EA, Ikryannikova LN, Alekseev DG, Kamashev DE, Malakhova MV, Parfenova TV, Afanas'ev MV, Ischenko DS, Bazaleev NA, Smirnova TG, Larionova EE, Chernousova LN, Beletsky AV, Mardanov AV, Ravin NV, Skryabin KG, Govorun VM. Comparative genomic analysis of Mycobacterium tuberculosis drug resistant strains from Russia. PLoS One 2013, 8(2):e56577. doi:10.1371/journal.pone.0056577. Epub 2013 Feb 20, 10.1371/journal.pone.0056577, 3577857, 23437175.
-
(2013)
PLoS One
, vol.8
, Issue.2
-
-
Ilina, E.N.1
Shitikov, E.A.2
Ikryannikova, L.N.3
Alekseev, D.G.4
Kamashev, D.E.5
Malakhova, M.V.6
Parfenova, T.V.7
Afanas'ev, M.V.8
Ischenko, D.S.9
Bazaleev, N.A.10
Smirnova, T.G.11
Larionova, E.E.12
Chernousova, L.N.13
Beletsky, A.V.14
Mardanov, A.V.15
Ravin, N.V.16
Skryabin, K.G.17
Govorun, V.M.18
-
19
-
-
79551502352
-
TubercuList-10 years after
-
doi:10.1016/j.tube.2010.09.008. Epub 2010 Oct 25. PubMed PMID: 20980199, 10.1016/j.tube.2010.09.008, 20980199
-
Lew JM, Kapopoulou A, Jones LM, Cole ST. TubercuList-10 years after. Tuberculosis (Edinb) 2011, 91(1):1-7. doi:10.1016/j.tube.2010.09.008. Epub 2010 Oct 25. PubMed PMID: 20980199, 10.1016/j.tube.2010.09.008, 20980199.
-
(2011)
Tuberculosis (Edinb)
, vol.91
, Issue.1
, pp. 1-7
-
-
Lew, J.M.1
Kapopoulou, A.2
Jones, L.M.3
Cole, S.T.4
-
20
-
-
58149182735
-
TB database: an integrated platform for tuberculosis research
-
Database issue, doi:10.1093/nar/gkn652. Epub 2008 Oct3. PubMed PMID: 18835847; PubMed Central PMCID: PMC2686437, 2686437, 18835847
-
Reddy TB, Riley R, Wymore F, Montgomery P, DeCaprio D, Engels R, Gellesch M, Hubble J, Jen D, Jin H, Koehrsen M, Larson L, Mao M, Nitzberg M, Sisk P, Stolte C, Weiner B, White J, Zachariah ZK, Sherlock G, Galagan JE, Ball CA, Schoolnik GK. TB database: an integrated platform for tuberculosis research. Nucleic Acids Res 2009, 37(Database issue):D499-D508. doi:10.1093/nar/gkn652. Epub 2008 Oct3. PubMed PMID: 18835847; PubMed Central PMCID: PMC2686437, 2686437, 18835847.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Reddy, T.B.1
Riley, R.2
Wymore, F.3
Montgomery, P.4
DeCaprio, D.5
Engels, R.6
Gellesch, M.7
Hubble, J.8
Jen, D.9
Jin, H.10
Koehrsen, M.11
Larson, L.12
Mao, M.13
Nitzberg, M.14
Sisk, P.15
Stolte, C.16
Weiner, B.17
White, J.18
Zachariah, Z.K.19
Sherlock, G.20
Galagan, J.E.21
Ball, C.A.22
Schoolnik, G.K.23
more..
-
21
-
-
49949119715
-
MGDD: Mycobacterium tuberculosis genome divergence database
-
doi:10.1186/1471-2164-9-373, 10.1186/1471-2164-9-373, 2518163, 18681951
-
Vishnoi A, Srivastava A, Roy R, Bhattacharya A. MGDD: Mycobacterium tuberculosis genome divergence database. BMC Genomics 2008, 9:373. doi:10.1186/1471-2164-9-373, 10.1186/1471-2164-9-373, 2518163, 18681951.
-
(2008)
BMC Genomics
, vol.9
, pp. 373
-
-
Vishnoi, A.1
Srivastava, A.2
Roy, R.3
Bhattacharya, A.4
-
22
-
-
80855134793
-
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species
-
doi:10.1128/IAI.00207-11. Epub 2011 Sep 6, 10.1128/IAI.00207-11, 3257917, 21896772
-
Gillespie JJ, Wattam AR, Cammer SA, Gabbard JL, Shukla MP, Dalay O, Driscoll T, Hix D, Mane SP, Mao C, Nordberg EK, Scott M, Schulman JR, Snyder EE, Sullivan DE, Wang C, Warren A, Williams KP, Xue T, Yoo HS, Zhang C, Zhang Y, Will R, Kenyon RW, Sobral BW. PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species. Infect Immun 2011, 79(11):4286-4298. doi:10.1128/IAI.00207-11. Epub 2011 Sep 6, 10.1128/IAI.00207-11, 3257917, 21896772.
-
(2011)
Infect Immun
, vol.79
, Issue.11
, pp. 4286-4298
-
-
Gillespie, J.J.1
Wattam, A.R.2
Cammer, S.A.3
Gabbard, J.L.4
Shukla, M.P.5
Dalay, O.6
Driscoll, T.7
Hix, D.8
Mane, S.P.9
Mao, C.10
Nordberg, E.K.11
Scott, M.12
Schulman, J.R.13
Snyder, E.E.14
Sullivan, D.E.15
Wang, C.16
Warren, A.17
Williams, K.P.18
Xue, T.19
Yoo, H.S.20
Zhang, C.21
Zhang, Y.22
Will, R.23
Kenyon, R.W.24
Sobral, B.W.25
more..
-
23
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Database issue, doi:10.1093/nar/gkr988. Epub 2011 Nov 10. PubMed PMID: 22080510; PubMed Central PMCID: PMC3245020, 3245020, 22080510
-
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 2012, 40(Database issue):D109-D114. doi:10.1093/nar/gkr988. Epub 2011 Nov 10. PubMed PMID: 22080510; PubMed Central PMCID: PMC3245020, 3245020, 22080510.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
24
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
PubMed PMID: 10592173; PubMed Central PMCID: PMC102409, 10.1093/nar/28.1.27, 102409, 10592173
-
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28(1):27-30. PubMed PMID: 10592173; PubMed Central PMCID: PMC102409, 10.1093/nar/28.1.27, 102409, 10592173.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
25
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
doi:10.1038/nmeth.1923, 10.1038/nmeth.1923, 3322381, 22388286
-
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods 2012, 9(4):357-359. doi:10.1038/nmeth.1923, 10.1038/nmeth.1923, 3322381, 22388286.
-
(2012)
Nat Methods
, vol.9
, Issue.4
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
26
-
-
68549104404
-
The sequence alignment/map (SAM) format and SAMtools
-
10.1093/bioinformatics/btp352, 2723002, 19505943, 1000 Genome Project Data Processing Subgroup
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, . 1000 Genome Project Data Processing Subgroup The sequence alignment/map (SAM) format and SAMtools. Bioinformatics 2009, 25:2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943, 1000 Genome Project Data Processing Subgroup.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
27
-
-
79960405019
-
The variant call format and VCFtools
-
doi:10.1093/bioinformatics/btr330. Epub 2011 Jun 7, 10.1093/bioinformatics/btr330, 3137218, 21653522, 1000 Genomes Project Analysis Group
-
Danecek P, Auton A, Abecasis G, Albers C, Banks E, DePristo M, Handsaker R, Lunter G, Marth G, Sherry S, McVean G, Durbin R, . 1000 Genomes Project Analysis Group The variant call format and VCFtools. Bioinformatics 2011, 27(15):2156-2158. doi:10.1093/bioinformatics/btr330. Epub 2011 Jun 7, 10.1093/bioinformatics/btr330, 3137218, 21653522, 1000 Genomes Project Analysis Group.
-
(2011)
Bioinformatics
, vol.27
, Issue.15
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
Albers, C.4
Banks, E.5
DePristo, M.6
Handsaker, R.7
Lunter, G.8
Marth, G.9
Sherry, S.10
McVean, G.11
Durbin, R.12
-
28
-
-
69749083447
-
JBrowse: a next-generation genome browser
-
doi:10.1101/gr.094607.109. Epub 2009 Jul 1, 10.1101/gr.094607.109, 2752129, 19570905
-
Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH. JBrowse: a next-generation genome browser. Genome Res 2009, 19(9):1630-1638. doi:10.1101/gr.094607.109. Epub 2009 Jul 1, 10.1101/gr.094607.109, 2752129, 19570905.
-
(2009)
Genome Res
, vol.19
, Issue.9
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
Mungall, C.J.4
Holmes, I.H.5
-
29
-
-
84875582766
-
Visualizing next-generation sequencing data with JBrowse
-
doi:10.1093/bib/bbr078. Epub 2012 Mar 12, 10.1093/bib/bbr078, 3603211, 22411711
-
Westesson O, Skinner M, Holmes I. Visualizing next-generation sequencing data with JBrowse. Brief Bioinform 2013, 14(2):172-177. doi:10.1093/bib/bbr078. Epub 2012 Mar 12, 10.1093/bib/bbr078, 3603211, 22411711.
-
(2013)
Brief Bioinform
, vol.14
, Issue.2
, pp. 172-177
-
-
Westesson, O.1
Skinner, M.2
Holmes, I.3
-
30
-
-
84872617175
-
NCBI Sequence Read Archive
-
NCBI Sequence Read Archive. [http://www.ncbi.nlm.nih.gov/Traces/sra/].
-
-
-
-
31
-
-
84859545563
-
Microevolution of extensively drug-resistant tuberculosis in Russia
-
doi:10.1101/gr.128678.111. Epub 2012 Jan 31, 10.1101/gr.128678.111, 3317155, 22294518
-
Casali N, Nikolayevskyy V, Balabanova Y, Ignatyeva O, Kontsevaya I, Harris SR, Bentley SD, Parkhill J, Nejentsev S, Hoffner SE, Horstmann RD, Brown T, Drobniewski F. Microevolution of extensively drug-resistant tuberculosis in Russia. Genome Res 2012, 22(4):735-745. doi:10.1101/gr.128678.111. Epub 2012 Jan 31, 10.1101/gr.128678.111, 3317155, 22294518.
-
(2012)
Genome Res
, vol.22
, Issue.4
, pp. 735-745
-
-
Casali, N.1
Nikolayevskyy, V.2
Balabanova, Y.3
Ignatyeva, O.4
Kontsevaya, I.5
Harris, S.R.6
Bentley, S.D.7
Parkhill, J.8
Nejentsev, S.9
Hoffner, S.E.10
Horstmann, R.D.11
Brown, T.12
Drobniewski, F.13
-
32
-
-
84895895475
-
Evolution and transmission of drug-resistant tuberculosis in a Russian population
-
doi:10.1038/ng.2878. Epub 2014 Jan, 10.1038/ng.2878, 24464101
-
Casali N, Nikolayevskyy V, Balabanova Y, Harris SR, Ignatyeva O, Kontsevaya I, Corander J, Bryant J, Parkhill J, Nejentsev S, Horstmann RD, Brown T, Drobniewski F. Evolution and transmission of drug-resistant tuberculosis in a Russian population. Nat Genet 2014, 46(3):279-286. doi:10.1038/ng.2878. Epub 2014 Jan, 10.1038/ng.2878, 24464101.
-
(2014)
Nat Genet
, vol.46
, Issue.3
, pp. 279-286
-
-
Casali, N.1
Nikolayevskyy, V.2
Balabanova, Y.3
Harris, S.R.4
Ignatyeva, O.5
Kontsevaya, I.6
Corander, J.7
Bryant, J.8
Parkhill, J.9
Nejentsev, S.10
Horstmann, R.D.11
Brown, T.12
Drobniewski, F.13
-
33
-
-
33646227714
-
Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
-
10.1186/1471-2180-6-23, 1468417, 16519816
-
Brudey K, Driscoll JR, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SA, Allix C, Aristimuño L, Arora J, Baumanis V, Binder L, Cafrune P, Cataldi A, Cheong S, Diel R, Ellermeier C, Evans JT, Fauville-Dufaux M, Ferdinand S, Garcia de Viedma D, Garzelli C, Gazzola L, Gomes HM, Guttierez MC, Hawkey PM, van Helden PD, Kadival GV, Kreiswirth BN, Kremer K, Kubin M, et al. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol 2006, 6:23. 10.1186/1471-2180-6-23, 1468417, 16519816.
-
(2006)
BMC Microbiol
, vol.6
, pp. 23
-
-
Brudey, K.1
Driscoll, J.R.2
Rigouts, L.3
Prodinger, W.M.4
Gori, A.5
Al-Hajoj, S.A.6
Allix, C.7
Aristimuño, L.8
Arora, J.9
Baumanis, V.10
Binder, L.11
Cafrune, P.12
Cataldi, A.13
Cheong, S.14
Diel, R.15
Ellermeier, C.16
Evans, J.T.17
Fauville-Dufaux, M.18
Ferdinand, S.19
Garcia de Viedma, D.20
Garzelli, C.21
Gazzola, L.22
Gomes, H.M.23
Guttierez, M.C.24
Hawkey, P.M.25
van Helden, P.D.26
Kadival, G.V.27
Kreiswirth, B.N.28
Kremer, K.29
Kubin, M.30
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