Mosaic origins of Bradyrhizobium legume symbionts on the Caribbean island of Guadeloupe

Molecular Phylogenetics and Evolution

Volumn 77, Issue 1, 2014, Pages 110-115

  Parker, Matthew A ^a   Rousteau, Alain ^b  

^a BINGHAMTON UNIVERSITY   (United States)

^b UNIVERSITÉ DES ANTILLES ET DE LA GUYANE   (France)

Author keywords

Lateral gene transfer; Legume symbiosis; Multilocus sequence analysis; Symbiont colonization; Tropical community assembly

Indexed keywords

BAYES THEOREM; BRADYRHIZOBIUM; CLASSIFICATION; DNA SEQUENCE; FABACEAE; GENETICS; GUADELOUPE; HORIZONTAL GENE TRANSFER; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; SYMBIOSIS;

BAYES THEOREM; BRADYRHIZOBIUM; FABACEAE; GENE TRANSFER, HORIZONTAL; GUADELOUPE; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SYMBIOSIS;

EID: 84899876839     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2014.04.011     Document Type: Article

References (37)

1. Andam C.C., Parker M.A. Origins of Bradyrhizobium nodule symbionts from two legume trees in the Philippines. J. Biogeography 2008, 35:1030-1039.
2. Aserse A.A., Räsänen L.A., Aseffa F., Hailemariam A., Lindström K. Phylogenetically diverse groups of Bradyrhizobium isolated from nodules of Crotalaria spp., Indigofera spp., Erythrina brucei and Glycine max growing in Ethiopia. Mol. Phylogenet. Evol. 2012, 65:595-609.
3. Delamuta J.R.M., Ribeiro R.A., Ormeño-Orrillo E., Melo I.S., Mart́inez-Romero E., Hungria M. Polyphasic evidence supporting the reclassification of Bradyrhizobium japonicum group Ia strains as Bradyrhizobium diazoefficiens sp. nov. Int. J. Syst. Evol. Microbiol. 2013, 63:3342-3351.
4. Feuillet N., Papponnier P., Manighetti I., Villemant B., King G.C.P. Differential uplift and tilt of pleistocene reef platforms and quaternary slip rate on the Morne-Piton normal fault (Guadeloupe, French West Indies). J. Geophysical. Res. 2004, 109:B02404.
5. Fournet, J., 2002. Flore illustrée des phanérogames de Guadeloupe et de Martinique. CIRAD, Gondwana éditions, La Trinite, Martinique.
6. Guerrouj K., Ruíz-Díez B., Chahboune R., Ramírez-Bahena M.H., Abdelmoumen H., Quiñones M.A., El Idrissi M.M., Velázquez E., Fernández-Pascual M., Bedmar E.J., Peix A. Definition of a novel symbiovar (sv. retamae) within Bradyrhizobium retamae sp. nov., nodulating Retama sphaerocarpa and Retama monosperma. Syst. Appl. Microbiol. 2013, 36:218-223.
7. Gyaneshwar P., Hirsch A.M., Moulin L., Chen W.-M., Elliot G.N., Bontemps C., Estrada-de los Santos P., Gross E., dos Reis F.B., Sprent J.I., Young J.P., James E.K. Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Mol. Plant-Microbe Int. 2011, 24:1276-1288.
8. Horn K., Parker I., Małek W., Rodríguez-Echeverría S., Parker M.A. Disparate origins of Bradyrhizobium symbionts for invasive populations of Cytisus scoparius (Leguminosae) in North America. FEMS Microbiol. Ecol. 2014, (in press). http://dx.doi.org/10.1111/1574-6941.12335.
9. Howard, R.A., 1988. Flora of the Lesser Antilles, Dicotyledoneae, Part 1. Arnold Arboretum of Harvard University, Jamaica Plain, Massachusetts.
10. Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23:254-267.
11. Iturralde-Vinent M.A., Macphee R.D.E. Paleogeography of the Caribbean region: implications for Cenozoic biogeography. Bull. Am. Mus. Nat. Hist. 1999, 238:1-95.
12. Kaneko T., Nakamura Y., Sato S., et al. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res. 2002, 9:189-197.
13. Koppell J.H., Parker M.A. Phylogenetic clustering of Bradyrhizobium symbionts on legumes indigenous to North America. Microbiology 2012, 158:2050-2059.
14. Lewis G., Schrire B., Mackinder B., Lock M. Legumes of the world 2005, Royal Botanic Gardens, Kew, UK.
15. Librado P., Rozas J. DnaSP v5: A software package for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
16. Moulin L.G., Bena G., Boivin-Masson C., Stepkowski T. Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus. Mol. Phylogenet. Evol. 2004, 30:720-732.
17. Leary J.K., Singleton P.W., Borthakur D. Canopy nodulation of the endemic tree legume Acacia koa in the mesic forests of Hawaii. Ecology 2004, 85:3151-3157.
18. Morton J.F. Creeping indigo (Indofera spicata Forsk.) (Fabaceae) - a hazard to herbivores in Florida. Econ. Bot. 1989, 43:314-327.
19. Nandasena K.G., O'hara G.W., Tiwari R.P., Howieson J.G. Rapid in situ evolution of nodulating strains for Biserrula pelecinus L. through lateral transfer of a symbiosis island from the original mesorhizobial inoculant. Appl. Env. Microbiol. 2006, 72:7365-7367.
20. Norman A.G. Persistence of Rhizobium japonicum in soil. Amer. Soc. Agron. J. 1942, 34:499.
21. Nzoue A., Miche L., Klonowska A., Laguerre G., de Lajudie P., Moulin L. Multilocus sequence analysis of bradyrhizobia isolated from Aeschynomene species in Senegal. Syst. Appl. Microbiol. 2009, 32:400-412.
22. Parker M.A. Mutualism as a constraint on invasion success for legumes and rhizobia. Diversity Distrib. 2001, 7:125-136.
23. Parker M.A. Symbiotic relationships of legumes and nodule bacteria on Barro Colorado Island, Panama: a review. Microbial Ecol. 2008, 55:662-672.
24. Parker M.A. Legumes select symbiosis island sequence variants in Bradyrhizobium. Molec. Ecol. 2012, 21:1769-1778.
25. Parker M.A., Lafay B., Burdon J.J., van Berkum P. Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium. Microbiology 2002, 148:2557-2565.
26. Parker M.A., Malek W., Parker I.M. Growth of an invasive legume is symbiont-limited in newly occupied habitats. Div. Distrib. 2006, 12:563-571.
27. Raza S., Jørnsgård B., Abou-Taleb H., Christiansen J.L. Tolerance of Bradyrhizobium sp. (Lupini) strains to salinity, pH, CaCO3 and antibiotics. Lett. Appl. Microbiol. 2001, 32:379-383.
28. Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
29. Samper A., Quidelleur X., Lahitte P., Mollex D. Timing of effusive volcanism and collapse events within an oceanic arc island: Basse-Terre. Guadeloupe archipelago. Earth Planet. Sci. Let. 2007, 258:175-191.
30. Saur E., Carcelle S., Guezennec S., Rousteau A. Nodulation of legume species in wetlands of Guadeloupe (Lesser Antilles). Wetlands 2000, 20:730-734.
31. Stepkowski T., Hughes C.E., Law I.J., Markiewicz L., Gurda D., Chlebicka A., Moulin L. Diversification of lupine Bradyrhizobium strains: evidence from nodulation gene trees. Appl. Environ. Microbiol. 2007, 73:3254-3264.
32. Stepkowski T., Watkin E., Mcinnes A., Gurda D., Gracz J., Steenkamp E.T. Distinct Bradyrhizobium communities nodulate legumes native to temperate and tropical monsoon Australia. Mol. Phylogenet. Evol. 2012, 63:265-277.
33. Sullivan J.T., Patrick H.N., Lowther W.L., Scott D.B., Ronson C.W. Nodulating strains of Rhizobium loti arise through chromosomal symbiotic gene transfer in the environment. Proc. Natl. Acad. Sci. USA 1995, 92:8985-8989.
34. Vinuesa P., Leon-Barrios M., Silva C., Willems A., Jarabo-Lorenzo A., Perez-Galdona R., Werner D., Martinez-Romero E. Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont from the nodules of endemic woody legume species (Papilionoideae: Genisteae) growing in the Canary Islands along with B. japonicum bv. genistearum, Bradyrhizobium genospecies a and Bradyrhizobium genospecies b. Int. J. Syst. Evol. Microbiol. 2005, 55:569-575.
35. Webb C.O., Ackerly D.D., Kembel S.W. Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 2008, 24:2098-2100.
36. Wei G., Chen W., Zhu W., Chen C., Young J.P.W., Bontemps C. Invasive Robinia pseudoacacia in China is nodulated by Mesorhizobium and Sinorhizobium species that share similar nodulation genes with native American symbionts. FEMS Microbiol. Ecol. 2009, 68:320-328.
37. Yamaguchi, N., Ichijo, T., Sakotani, A., Baba, T., Nasu, M., 2012. Global dispersion of bacterial cells on Asian dust. Sci. Rep. 2, 525; DOI:10.1038/srep00525.