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Volumn 36, Issue 4, 2013, Pages 218-223

Definition of a novel symbiovar (sv. retamae) within Bradyrhizobium retamae sp. nov., nodulating Retama sphaerocarpa and Retama monosperma

Author keywords

Bradyrhizobium retamae; Phylogeny; Retama; Symbiovar

Indexed keywords

RNA 16S;

EID: 84877816949     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2013.03.001     Document Type: Article
Times cited : (85)

References (51)
  • 2
    • 54449096586 scopus 로고    scopus 로고
    • Genetic diversity of native bradyrhizobia isolated from soybeans (Glycine max L.) in different agricultural-ecological-climatic regions of India
    • Appunu C., N'Zoue A., Laguerre G. Genetic diversity of native bradyrhizobia isolated from soybeans (Glycine max L.) in different agricultural-ecological-climatic regions of India. Appl. Environ. Microbiol. 2008, 74:5991-5996.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 5991-5996
    • Appunu, C.1    N'Zoue, A.2    Laguerre, G.3
  • 3
    • 67349193709 scopus 로고    scopus 로고
    • Retama species growing in different ecological-climatic areas of northeastern Algeria have a narrow range of rhizobia that form a novel phylogenetic clade within the Bradyrhizobium genus
    • Boulila F., Depret G., Boulila A., Belhadi D., Benallaoua S., Laguerre G. Retama species growing in different ecological-climatic areas of northeastern Algeria have a narrow range of rhizobia that form a novel phylogenetic clade within the Bradyrhizobium genus. Syst. Appl. Microbiol. 2009, 32:245-255.
    • (2009) Syst. Appl. Microbiol. , vol.32 , pp. 245-255
    • Boulila, F.1    Depret, G.2    Boulila, A.3    Belhadi, D.4    Benallaoua, S.5    Laguerre, G.6
  • 4
    • 0042853263 scopus 로고    scopus 로고
    • Re-establishment of Retama sphaerocarpa as a target species for reclamation of soil physical and biological properties in a semi-arid Mediterranean area
    • Caravaca F., Alguacil M.M., Figueroa D., Barea J.M., Roldán A. Re-establishment of Retama sphaerocarpa as a target species for reclamation of soil physical and biological properties in a semi-arid Mediterranean area. Forest Ecol. Manage. 2003, 182:49-58.
    • (2003) Forest Ecol. Manage. , vol.182 , pp. 49-58
    • Caravaca, F.1    Alguacil, M.M.2    Figueroa, D.3    Barea, J.M.4    Roldán, A.5
  • 7
    • 79955479925 scopus 로고    scopus 로고
    • Bradyrhizobium lablabi sp. nov., isolated from effective nodules of Lablab purpureus and Arachis hypogaea
    • Chang Y.L., Wang J.Y., Wang T., Liu H.C., Sui X.H., Chen W.X. Bradyrhizobium lablabi sp. nov., isolated from effective nodules of Lablab purpureus and Arachis hypogaea. Int. J. Syst. Evol. Microbiol. 2011, 61:2496-2502.
    • (2011) Int. J. Syst. Evol. Microbiol. , vol.61 , pp. 2496-2502
    • Chang, Y.L.1    Wang, J.Y.2    Wang, T.3    Liu, H.C.4    Sui, X.H.5    Chen, W.X.6
  • 8
    • 0028904058 scopus 로고
    • A phylogenetic analysis of the genus Nocardia with 16S rRNA sequences
    • Chun J., Goodfellow M. A phylogenetic analysis of the genus Nocardia with 16S rRNA sequences. Int. J. Syst. Bacteriol. 1995, 45:240-245.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 240-245
    • Chun, J.1    Goodfellow, M.2
  • 9
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki T., Hashimoto Y., Yabuchi E. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 1989, 39:224-229.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuchi, E.3
  • 10
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 1981, 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 11
    • 0030021698 scopus 로고    scopus 로고
    • Investigation of rooting depth in the semi-arid shrub Retama sphaerocarpa (L.) Boiss. By labelling of ground water with a chemical tracer
    • Haase P., Pugnaire F.I., Fernández E.M., Puigdefábregas J., Clark S.C., Incoll L.D. Investigation of rooting depth in the semi-arid shrub Retama sphaerocarpa (L.) Boiss. By labelling of ground water with a chemical tracer. J. Hydrol. 1996, 177:23-31.
    • (1996) J. Hydrol. , vol.177 , pp. 23-31
    • Haase, P.1    Pugnaire, F.I.2    Fernández, E.M.3    Puigdefábregas, J.4    Clark, S.C.5    Incoll, L.D.6
  • 12
    • 0027338680 scopus 로고
    • Inoculation of woody legumes with selected arbuscular mycorrhizal fungi and rhizobia to recover desertified Mediterranean ecosystems
    • Herrera M.A., Salamanca C.P., Barea J.M. Inoculation of woody legumes with selected arbuscular mycorrhizal fungi and rhizobia to recover desertified Mediterranean ecosystems. Appl. Environ. Microbiol. 1993, 59:129-133.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 129-133
    • Herrera, M.A.1    Salamanca, C.P.2    Barea, J.M.3
  • 13
    • 0000015723 scopus 로고
    • Blastobacter aggregatus sp. nov., Blastobacter capsulatus sp. nov., and Blastobacter denitrificans sp. nov., new budding bacteria from freshwater habitats
    • Hirsch P., Müller M. Blastobacter aggregatus sp. nov., Blastobacter capsulatus sp. nov., and Blastobacter denitrificans sp. nov., new budding bacteria from freshwater habitats. Syst. Appl. Microbiol. 1985, 6:281-286.
    • (1985) Syst. Appl. Microbiol. , vol.6 , pp. 281-286
    • Hirsch, P.1    Müller, M.2
  • 14
    • 45849141919 scopus 로고    scopus 로고
    • Bradyrhizobium iriomotense sp. nov., isolated from a tumor-like root of the legume Entada koshunensis from Iriomote Island in Japan
    • Islam M.S., Kawasaki H., Muramatsu Y., Nakagawa Y., Seki T. Bradyrhizobium iriomotense sp. nov., isolated from a tumor-like root of the legume Entada koshunensis from Iriomote Island in Japan. Biosci. Biotechnol. Biochem. 2008, 72:1416-1429.
    • (2008) Biosci. Biotechnol. Biochem. , vol.72 , pp. 1416-1429
    • Islam, M.S.1    Kawasaki, H.2    Muramatsu, Y.3    Nakagawa, Y.4    Seki, T.5
  • 16
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 18
    • 0035052315 scopus 로고    scopus 로고
    • Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts
    • Laguerre G., Nour S.M., Macheret V., Sanjuan J., Drouin P., Amarger N. Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts. Microbiology 2001, 147:981-993.
    • (2001) Microbiology , vol.147 , pp. 981-993
    • Laguerre, G.1    Nour, S.M.2    Macheret, V.3    Sanjuan, J.4    Drouin, P.5    Amarger, N.6
  • 19
    • 77956996468 scopus 로고
    • Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA
    • Mandel M., Mamur J. Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol. 1968, 12B:195-206.
    • (1968) Methods Enzymol. , vol.12 B , pp. 195-206
    • Mandel, M.1    Mamur, J.2
  • 20
    • 72149126871 scopus 로고    scopus 로고
    • Phylogeny and taxonomy of a diverse collection of Bradyrhizobium strains based on multilocus sequence analysis of the 16S rRNA gene, ITS region and glnII, recA, atpD and dnaK genes
    • Menna P., Barcellos F.G., Hungria M. Phylogeny and taxonomy of a diverse collection of Bradyrhizobium strains based on multilocus sequence analysis of the 16S rRNA gene, ITS region and glnII, recA, atpD and dnaK genes. Int. J. Syst. Evol. Microbiol. 2009, 59:2934-2950.
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 2934-2950
    • Menna, P.1    Barcellos, F.G.2    Hungria, M.3
  • 21
    • 0027020847 scopus 로고
    • Partitioning growth and photosynthesis between leaves and stems during nitrogen limitation in Spartium junceum
    • Nilsen E.T. Partitioning growth and photosynthesis between leaves and stems during nitrogen limitation in Spartium junceum. Am. J. Bot. 1992, 79:1217-1223.
    • (1992) Am. J. Bot. , vol.79 , pp. 1217-1223
    • Nilsen, E.T.1
  • 23
    • 0030433822 scopus 로고    scopus 로고
    • Facilitation between higher plant species in a semiarid environment
    • Pugnaire F.I., Haase P., Puigdefábregas J. Facilitation between higher plant species in a semiarid environment. Ecology 1996, 77:1420-1426.
    • (1996) Ecology , vol.77 , pp. 1420-1426
    • Pugnaire, F.I.1    Haase, P.2    Puigdefábregas, J.3
  • 25
    • 84874855321 scopus 로고    scopus 로고
    • Reclassification of Agromonas oligotrophica into genus Bradyrhizobium as Bradyrhizobium oligotrophicum comb. nov
    • doi:10.1099/ijs.0.041897-0
    • Ramírez-Bahena M.H., Chahboune R., Peix A., Velázquez E. Reclassification of Agromonas oligotrophica into genus Bradyrhizobium as Bradyrhizobium oligotrophicum comb. nov. Int. J Syst. Evol. Microbiol. 2012, doi:10.1099/ijs.0.041897-0.
    • (2012) Int. J Syst. Evol. Microbiol.
    • Ramírez-Bahena, M.H.1    Chahboune, R.2    Peix, A.3    Velázquez, E.4
  • 27
    • 33749529082 scopus 로고    scopus 로고
    • Biodiversity of populations of phosphate solubilizing rhizobia that nodulate chickpea in different Spanish soils
    • Rivas R., Peix A., Mateos P.F., Trujillo M.E., Martinez-Molina E., Velázquez E. Biodiversity of populations of phosphate solubilizing rhizobia that nodulate chickpea in different Spanish soils. Plant Soil 2006, 287:23-33.
    • (2006) Plant Soil , vol.287 , pp. 23-33
    • Rivas, R.1    Peix, A.2    Mateos, P.F.3    Trujillo, M.E.4    Martinez-Molina, E.5    Velázquez, E.6
  • 28
    • 33846456991 scopus 로고    scopus 로고
    • Characterization of xylanolytic bacteria present in the bract phyllosphere of the date palm Phoenix dactylifera
    • Rivas R., García-Fraile P., Mateos P.F., Martínez-Molina E., Velázquez E. Characterization of xylanolytic bacteria present in the bract phyllosphere of the date palm Phoenix dactylifera. Lett. Appl. Microbiol. 2007, 44:181-187.
    • (2007) Lett. Appl. Microbiol. , vol.44 , pp. 181-187
    • Rivas, R.1    García-Fraile, P.2    Mateos, P.F.3    Martínez-Molina, E.4    Velázquez, E.5
  • 29
    • 17944393915 scopus 로고    scopus 로고
    • Soil fertility and herb facilitation mediated by Retama sphaerocarpa
    • Rodríguez-Echeverría S., Pérez-Fernández M.A. Soil fertility and herb facilitation mediated by Retama sphaerocarpa. J. Veg. Sci. 2003, 14:807-814.
    • (2003) J. Veg. Sci. , vol.14 , pp. 807-814
    • Rodríguez-Echeverría, S.1    Pérez-Fernández, M.A.2
  • 30
    • 18144400608 scopus 로고    scopus 로고
    • Potencial use of Ibrian shrubby legumes and rhizobia inoculation in revegetation projects under acidic soil conditions
    • Rodríguez-Echeverría S., Pérez-Ferníndez M.A. Potencial use of Ibrian shrubby legumes and rhizobia inoculation in revegetation projects under acidic soil conditions. Appl. Soil Ecol. 2005, 29:203-208.
    • (2005) Appl. Soil Ecol. , vol.29 , pp. 203-208
    • Rodríguez-Echeverría, S.1    Pérez-Ferníndez, M.A.2
  • 31
    • 84865613348 scopus 로고    scopus 로고
    • Differential effectiveness of novel and old legume-rhizobia mutualisms: implications for invasion by exotic legumes
    • Rodríguez-Echeverría S., Fajardo S., Ruiz-Díez B., Fernández-Pascual M. Differential effectiveness of novel and old legume-rhizobia mutualisms: implications for invasion by exotic legumes. Oecologia 2012, 170:253-261.
    • (2012) Oecologia , vol.170 , pp. 253-261
    • Rodríguez-Echeverría, S.1    Fajardo, S.2    Ruiz-Díez, B.3    Fernández-Pascual, M.4
  • 33
    • 58149280649 scopus 로고    scopus 로고
    • Stress tolerance, genetic analysis and symbiotic properties of root-nodulating bacteria isolated from Mediterranean leguminous shrubs in Central Spain
    • Ruiz-Díez B., Fajardo S., Puertas-Mejía M.A., del Rosario de Felipe M., Fernández-Pascual M. Stress tolerance, genetic analysis and symbiotic properties of root-nodulating bacteria isolated from Mediterranean leguminous shrubs in Central Spain. Arch. Microbiol. 2009, 191:35-46.
    • (2009) Arch. Microbiol. , vol.191 , pp. 35-46
    • Ruiz-Díez, B.1    Fajardo, S.2    Puertas-Mejía, M.A.3    del Rosario de Felipe, M.4    Fernández-Pascual, M.5
  • 34
    • 0042877338 scopus 로고    scopus 로고
    • Plantations as a tool for mine spoil restoration
    • Singh A.N., Raghubanshi A.S., Singh J.S. Plantations as a tool for mine spoil restoration. Curr. Sci. 2002, 82:1436-1441.
    • (2002) Curr. Sci. , vol.82 , pp. 1436-1441
    • Singh, A.N.1    Raghubanshi, A.S.2    Singh, J.S.3
  • 36
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The clustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The clustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res. 1997, 24:4876-4882.
    • (1997) Nucleic Acid Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 39
    • 0036296379 scopus 로고    scopus 로고
    • Enhancing the early performance of the leguminous shrub Retama sphaerocarpa (L.) Boiss.: fertilisation versus Rhizobium inoculation
    • Valladares F., Villar-Salvador P., Domínguez S., Fernández-Pascual M., Peñuelas J.L., Pugnaire F.I. Enhancing the early performance of the leguminous shrub Retama sphaerocarpa (L.) Boiss.: fertilisation versus Rhizobium inoculation. Plant Soil 2002, 240:253-262.
    • (2002) Plant Soil , vol.240 , pp. 253-262
    • Valladares, F.1    Villar-Salvador, P.2    Domínguez, S.3    Fernández-Pascual, M.4    Peñuelas, J.L.5    Pugnaire, F.I.6
  • 42
    • 16844373395 scopus 로고    scopus 로고
    • Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta
    • Vinuesa P., León-Barrios M., Silva C., Willems A., Jarabo-Lorenzo A., Pérez-Galdona R., Werner D., Martínez-Romero E. Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta. Int. J. Syst. Evol. Microbiol. 2005, 55:569-575.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 569-575
    • Vinuesa, P.1    León-Barrios, M.2    Silva, C.3    Willems, A.4    Jarabo-Lorenzo, A.5    Pérez-Galdona, R.6    Werner, D.7    Martínez-Romero, E.8
  • 43
    • 9944222667 scopus 로고    scopus 로고
    • Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation
    • Vinuesa P., Silva C., Werner D., Martínez-Romero E. Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation. Mol. Phylogenet. Evol. 2005, 34:29-54.
    • (2005) Mol. Phylogenet. Evol. , vol.34 , pp. 29-54
    • Vinuesa, P.1    Silva, C.2    Werner, D.3    Martínez-Romero, E.4
  • 44
  • 48
    • 0028784710 scopus 로고
    • Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybeans
    • Xu L.M., Ge C., Cui Z., Li J., Fan H. Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybeans. Int. J. Syst. Bacteriol. 1995, 45:706-711.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 706-711
    • Xu, L.M.1    Ge, C.2    Cui, Z.3    Li, J.4    Fan, H.5
  • 49
    • 0036865629 scopus 로고    scopus 로고
    • Characterization of rhizobia that nodulate legume species within the genus Lespedeza and description of Bradyrhizobium yuanmingense sp. nov
    • Yao Z.Y., Kan F.L., Wang E.T., Chen W.X. Characterization of rhizobia that nodulate legume species within the genus Lespedeza and description of Bradyrhizobium yuanmingense sp. nov. Int. J. Syst. Evol. Microbiol. 2002, 52:2219-2230.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 2219-2230
    • Yao, Z.Y.1    Kan, F.L.2    Wang, E.T.3    Chen, W.X.4
  • 51
    • 49749141130 scopus 로고    scopus 로고
    • Diverse genomic species and evidences of symbiotic gene lateral transfer detected among the rhizobia associated with Astragalus species grown in the temperate regions of China
    • Zhao C.T., Wang E.T., Chen W.F., Chen W.X. Diverse genomic species and evidences of symbiotic gene lateral transfer detected among the rhizobia associated with Astragalus species grown in the temperate regions of China. FEMS Microbiol. Lett. 2008, 286:263-273.
    • (2008) FEMS Microbiol. Lett. , vol.286 , pp. 263-273
    • Zhao, C.T.1    Wang, E.T.2    Chen, W.F.3    Chen, W.X.4


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