-
1
-
-
72849115174
-
Origin and evolution of the adaptive immune system: Genetic events and selective pressures
-
Flajnik MF, Kasahara M (2010) Origin and evolution of the adaptive immune system: genetic events and selective pressures. Nat Rev Genet 11: 47-59.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 47-59
-
-
Flajnik, M.F.1
Kasahara, M.2
-
2
-
-
80053454877
-
Comparative genomics and evolution of immunoglobulin-encoding loci in tetrapods
-
Das S, Hirano M, McCallister C, Tako R, Nikolaidis N (2011) Comparative genomics and evolution of immunoglobulin-encoding loci in tetrapods. Adv Immunol 111: 143-178.
-
(2011)
Adv Immunol
, vol.111
, pp. 143-178
-
-
Das, S.1
Hirano, M.2
McCallister, C.3
Tako, R.4
Nikolaidis, N.5
-
3
-
-
84859407338
-
VLR-based adaptive immunity
-
Boehm T, McCurley N, Sutoh Y, Schorpp M, Kasahara M, et al. (2012) VLR-based adaptive immunity. Annu Rev Immunol 30: 203-220.
-
(2012)
Annu Rev Immunol
, vol.30
, pp. 203-220
-
-
Boehm, T.1
McCurley, N.2
Sutoh, Y.3
Schorpp, M.4
Kasahara, M.5
-
4
-
-
3142616423
-
Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey
-
DOI 10.1038/nature02740
-
Pancer Z, Amemiya CT, Ehrhardt GR, Ceitlin J, Gartland GL, et al. (2004) Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey. Nature 430: 174-180. (Pubitemid 38902420)
-
(2004)
Nature
, vol.430
, Issue.6996
, pp. 174-180
-
-
Pamcer, Z.1
Amemiya, C.T.2
Ehrhardt, G.R.A.3
Coitlin, J.4
Gartland, G.L.5
Cooper, M.D.6
-
5
-
-
21544476177
-
Variable lymphocyte receptors in hagfish
-
DOI 10.1073/pnas.0503792102
-
Pancer Z, Saha NR, Kasamatsu J, Suzuki T, Amemiya CT, et al. (2005) Variable lymphocyte receptors in hagfish. Proc Natl Acad Sci U S A 102: 9224-9229. (Pubitemid 40923545)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.26
, pp. 9224-9229
-
-
Pancer, Z.1
Saha, N.R.2
Kasamatsu, J.3
Suzuki, T.4
Amemiya, C.T.5
Kasahara, M.6
Cooper, M.D.7
-
6
-
-
3242881303
-
The phylogenetic origins of the antigen-binding receptors and somatic diversification mechanisms
-
DOI 10.1111/j.0105-2896.2004.00166.x
-
Cannon JP, Haire RN, Rast JP, Litman GW (2004) The phylogenetic origins of the antigen-binding receptors and somatic diversification mechanisms. Immunol Rev 200: 12-22. (Pubitemid 38998189)
-
(2004)
Immunological Reviews
, vol.200
, pp. 12-22
-
-
Cannon, J.P.1
Haire, R.N.2
Rast, J.P.3
Litman, G.W.4
-
7
-
-
7644232415
-
Evolution of innate and adaptive immunity: Can we draw a line?
-
DOI 10.1016/j.it.2004.10.001, PII S1471490604002972
-
Flajnik MF, Du Pasquier L (2004) Evolution of innate and adaptive immunity: can we draw a line? Trends Immunol 25: 640-644. (Pubitemid 39457975)
-
(2004)
Trends in Immunology
, vol.25
, Issue.12
, pp. 640-644
-
-
Flajnik, M.F.1
Du, P.L.2
-
8
-
-
29344475707
-
Immunology: Diversity and function of adaptive immune receptors in a jawless vertebrate
-
DOI 10.1126/science.1119420
-
Alder MN, Rogozin IB, Iyer LM, Glazko GV, Cooper MD, et al. (2005) Diversity and function of adaptive immune receptors in a jawless vertebrate. Science 310: 1970-1973. (Pubitemid 43005993)
-
(2005)
Science
, vol.310
, Issue.5756
, pp. 1970-1973
-
-
Alder, M.N.1
Rogozin, I.B.2
Iyer, L.M.3
Glazko, G.V.4
Cooper, M.D.5
Pancer, Z.6
-
9
-
-
33846481302
-
Antigen-receptor genes of the agnathan lamprey are assembled by a process involving copy choice
-
DOI 10.1038/ni1419, PII NI1419
-
Nagawa F, Kishishita N, Shimizu K, Hirose S, Miyoshi M, et al. (2007) Antigen-receptor genes of the agnathan lamprey are assembled by a process involving copy choice. Nat Immunol 8: 206-213. (Pubitemid 46152652)
-
(2007)
Nature Immunology
, vol.8
, Issue.2
, pp. 206-213
-
-
Nagawa, F.1
Kishishita, N.2
Shimizu, K.3
Hirose, S.4
Miyoshi, M.5
Nezu, J.6
Nishimura, T.7
Nishizumi, H.8
Takahashi, Y.9
Hashimoto, S.-I.10
Takeuchi, M.11
Miyajima, A.12
Takemori, T.13
Otsuka, A.J.14
Sakano, H.15
-
10
-
-
34249065874
-
Evolution and diversification of lamprey antigen receptors: Evidence for involvement of an AID-APOBEC family cytosine deaminase
-
DOI 10.1038/ni1463, PII NI1463
-
Rogozin IB, Iyer LM, Liang L, Glazko GV, Liston VG, et al. (2007) Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase. Nat Immunol 8: 647-656. (Pubitemid 46785129)
-
(2007)
Nature Immunology
, vol.8
, Issue.6
, pp. 647-656
-
-
Rogozin, I.B.1
Iyer, L.M.2
Liang, L.3
Glazko, G.V.4
Liston, V.G.5
Pavlov, Y.I.6
Aravind, L.7
Pancer, Z.8
-
11
-
-
75949109353
-
Regulation of antigen-receptor gene assembly in hagfish
-
Kishishita N, Matsuno T, Takahashi Y, Takaba H, Nishizumi H, et al. (2010) Regulation of antigen-receptor gene assembly in hagfish. EMBO Rep 11: 126-132.
-
(2010)
EMBO Rep
, vol.11
, pp. 126-132
-
-
Kishishita, N.1
Matsuno, T.2
Takahashi, Y.3
Takaba, H.4
Nishizumi, H.5
-
12
-
-
69149104578
-
High-affinity lamprey VLRA and VLRB monoclonal antibodies
-
Tasumi S, Velikovsky CA, Xu G, Gai SA, Wittrup KD, et al. (2009) High-affinity lamprey VLRA and VLRB monoclonal antibodies. Proc Natl Acad Sci U S A 106: 12891-12896.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 12891-12896
-
-
Tasumi, S.1
Velikovsky, C.A.2
Xu, G.3
Gai, S.A.4
Wittrup, K.D.5
-
13
-
-
77956279285
-
Identification of a third variable lymphocyte receptor in the lamprey
-
Kasamatsu J, Sutoh Y, Fugo K, Otsuka N, Iwabuchi K, et al. (2010) Identification of a third variable lymphocyte receptor in the lamprey. Proc Natl Acad Sci U S A 107: 14304-14308.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14304-14308
-
-
Kasamatsu, J.1
Sutoh, Y.2
Fugo, K.3
Otsuka, N.4
Iwabuchi, K.5
-
14
-
-
84876016474
-
Organization of lamprey variable lymphocyte receptor C locus and repertoire development
-
Das S, Hirano M, Aghaallaei N, Bajoghli B, Boehm T, et al. (2013) Organization of lamprey variable lymphocyte receptor C locus and repertoire development. Proc Natl Acad Sci U S A 110: 6043-6048.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 6043-6048
-
-
Das, S.1
Hirano, M.2
Aghaallaei, N.3
Bajoghli, B.4
Boehm, T.5
-
15
-
-
41149134858
-
Structure and specificity of lamprey monoclonal antibodies
-
DOI 10.1073/pnas.0711619105
-
Herrin BR, Alder MN, Roux KH, Sina C, Ehrhardt GR, et al. (2008) Structure and specificity of lamprey monoclonal antibodies. Proc Natl Acad Sci U S A 105: 2040-2045. (Pubitemid 351439461)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.6
, pp. 2040-2045
-
-
Herrin, B.R.1
Alder, M.N.2
Roux, K.H.3
Sina, C.4
Ehrhardt, G.R.A.5
Boydston, J.A.6
Turnbough Jr., C.L.7
Cooper, M.D.8
-
16
-
-
67349128569
-
Dual nature of the adaptive immune system in lampreys
-
Guo P, Hirano M, Herrin BR, Li J, Yu C, et al. (2009) Dual nature of the adaptive immune system in lampreys. Nature 459: 796-801.
-
(2009)
Nature
, vol.459
, pp. 796-801
-
-
Guo, P.1
Hirano, M.2
Herrin, B.R.3
Li, J.4
Yu, C.5
-
17
-
-
84884412276
-
Evolutionary implications of a third lymphocyte lineage in lampreys
-
in press
-
Hirano M, Guo P, McCurley N, Schorpp M, Das S, et al. (2013) Evolutionary implications of a third lymphocyte lineage in lampreys. Nature in press.
-
(2013)
Nature
-
-
Hirano, M.1
Guo, P.2
McCurley, N.3
Schorpp, M.4
Das, S.5
-
18
-
-
34249058902
-
Structural diversity of the hagfish variable lymphocyte receptors
-
DOI 10.1074/jbc.M608471200
-
Kim HM, Oh SC, Lim KJ, Kasamatsu J, Heo JY, et al. (2007) Structural diversity of the hagfish variable lymphocyte receptors. J Biol Chem 282: 6726-6732. (Pubitemid 47100838)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.9
, pp. 6726-6732
-
-
Ho, M.K.1
Se, C.O.2
Ki, J.L.3
Kasamatsu, J.4
Jin, Y.H.5
Beom, S.P.6
Lee, H.7
Ook, J.Y.8
Kasahara, M.9
Lee, J.-O.10
-
19
-
-
52949150063
-
Antigen recognition by variable lymphocyte receptors
-
Han BW, Herrin BR, Cooper MD, Wilson IA (2008) Antigen recognition by variable lymphocyte receptors. Science 321: 1834-1837.
-
(2008)
Science
, vol.321
, pp. 1834-1837
-
-
Han, B.W.1
Herrin, B.R.2
Cooper, M.D.3
Wilson, I.A.4
-
20
-
-
67650299462
-
Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen
-
Velikovsky CA, Deng L, Tasumi S, Iyer LM, Kerzic MC, et al. (2009) Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen. Nat Struct Mol Biol 16: 725-730.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 725-730
-
-
Velikovsky, C.A.1
Deng, L.2
Tasumi, S.3
Iyer, L.M.4
Kerzic, M.C.5
-
21
-
-
84857956412
-
Variable lymphocyte receptor recognition of the immunodominant glycoprotein of Bacillus anthracis spores
-
Kirchdoerfer RN, Herrin BR, Han BW, Turnbough CL Jr, Cooper MD, et al. (2012) Variable lymphocyte receptor recognition of the immunodominant glycoprotein of Bacillus anthracis spores. Structure 20: 479-486.
-
(2012)
Structure
, vol.20
, pp. 479-486
-
-
Kirchdoerfer, R.N.1
Herrin, B.R.2
Han, B.W.3
Turnbough Jr., C.L.4
Cooper, M.D.5
-
22
-
-
77955794745
-
A structural basis for antigen recognition by the T cell-like lymphocytes of sea lamprey
-
Deng L, Velikovsky CA, Xu G, Iyer LM, Tasumi S, et al. (2010) A structural basis for antigen recognition by the T cell-like lymphocytes of sea lamprey. Proc Natl Acad Sci U S A 107: 13408-13413.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 13408-13413
-
-
Deng, L.1
Velikovsky, C.A.2
Xu, G.3
Iyer, L.M.4
Tasumi, S.5
-
23
-
-
16444362423
-
Structure of a gammadelta T cell receptor in complex with the nonclassical MHC T22
-
DOI 10.1126/science.1106885
-
Adams EJ, Chien YH, Garcia KC (2005) Structure of a gammadelta T cell receptor in complex with the nonclassical MHC T22. Science 308: 227-231. (Pubitemid 40558852)
-
(2005)
Science
, vol.308
, Issue.5719
, pp. 227-231
-
-
Adams, E.J.1
Chien, Y.-H.2
Garcia, K.C.3
-
24
-
-
33748157784
-
Gammadelta T cells - Innate immune lymphocytes?
-
DOI 10.1016/j.coi.2006.07.008, PII S0952791506001440, Innate Lymphocytes/Transplantation/Immunogenetics
-
Konigshofer Y, Chien YH (2006) Gammadelta T cells - innate immune lymphocytes? Curr Opin Immunol 18: 527-533. (Pubitemid 44311453)
-
(2006)
Current Opinion in Immunology
, vol.18
, Issue.5
, pp. 527-533
-
-
Konigshofer, Y.1
Chien, Y.-h.2
-
26
-
-
0030064682
-
The downstream box: An efficient and independent translation initiation signal in Escherichia coli
-
Sprengart ML, Fuchs E, Porter AG (1996) The downstream box: an efficient and independent translation initiation signal in Escherichia coli. EMBO J 15: 665-674. (Pubitemid 26044580)
-
(1996)
EMBO Journal
, vol.15
, Issue.3
, pp. 665-674
-
-
Sprengart, M.L.1
Fuchs, E.2
Porter, A.G.3
-
28
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews BW (1968) Solvent content of protein crystals. JMol Biol 33: 491-497.
-
(1968)
JMol Biol
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
29
-
-
0000560808
-
MOLREP: An Automated Program for Molecular Replacement
-
Vagin A, Teplyakov A (1997) MOLREP: an Automated Program for Molecular Replacement. J Appl Crystallogr 30: 1022-1025. (Pubitemid 127485985)
-
(1997)
Journal of Applied Crystallography
, vol.30
, Issue.6
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
31
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66: 213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
-
32
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen VB, Arendall WB 3rd, Headd JJ, Keedy DA, Immormino RM, et al. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 66: 12-21.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
-
34
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
DOI 10.1107/S0907444904026460
-
Krissinel E, Henrick K (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D Biol Crystallogr 60: 2256-2268. (Pubitemid 41742778)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.12 I
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
35
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680. (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
36
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
37
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
39
-
-
34548133728
-
Predicting functionally important residues from sequence conservation
-
DOI 10.1093/bioinformatics/btm270
-
Capra JA, Singh M (2007) Predicting functionally important residues from sequence conservation. Bioinformatics 23: 1875-1882. (Pubitemid 47299827)
-
(2007)
Bioinformatics
, vol.23
, Issue.15
, pp. 1875-1882
-
-
Capra, J.A.1
Singh, M.2
-
40
-
-
0037119003
-
Structures of glycoprotein Ibalpha and its complex with von Willebrand factor A1 domain
-
DOI 10.1126/science.107355
-
Huizinga EG, Tsuji S, Romijn RA, Schiphorst ME, de Groot PG, et al. (2002) Structures of glycoprotein Ibalpha and its complex with von Willebrand factor A1 domain. Science 297: 1176-1179. (Pubitemid 36196734)
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1176-1179
-
-
Huizinga, E.G.1
Tsuji, S.2
Romijn, R.A.P.3
Schiphorst, M.E.4
De Groot, P.G.5
Sixma, J.J.6
Gros, P.7
-
41
-
-
79955483094
-
Design principles of adaptive immune systems
-
Boehm T (2011) Design principles of adaptive immune systems. Nat Rev Immunol 11: 307-317.
-
(2011)
Nat Rev Immunol
, vol.11
, pp. 307-317
-
-
Boehm, T.1
-
42
-
-
84892485828
-
A major allogenic leukocyte antigen in the agnathan hagfish
-
Takaba H, Imai T, Miki S, Morishita Y, Miyashita A, et al. (2013) A major allogenic leukocyte antigen in the agnathan hagfish. Sci Rep 3: 1716.
-
(2013)
Sci Rep
, vol.3
, pp. 1716
-
-
Takaba, H.1
Imai, T.2
Miki, S.3
Morishita, Y.4
Miyashita, A.5
|