메뉴 건너뛰기




Volumn 91, Issue 1, 2014, Pages 153-161

An improved robust association test for GWAS with multiple diseases

Author keywords

Chi square partition; Genetic model; Robust test; Trend test

Indexed keywords


EID: 84899823261     PISSN: 01677152     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.spl.2014.04.015     Document Type: Article
Times cited : (13)

References (40)
  • 2
    • 0000937686 scopus 로고
    • Tests for linear trends in proportions and frequencies
    • Armitage P. Tests for linear trends in proportions and frequencies. Biometrics 1955, 11:375-386.
    • (1955) Biometrics , vol.11 , pp. 375-386
    • Armitage, P.1
  • 3
    • 79952695280 scopus 로고    scopus 로고
    • Is the weighted z-test the best method for combining probabilities from independent tests?
    • Chen Z. Is the weighted z-test the best method for combining probabilities from independent tests?. J. Evol. Biol. 2011, 24:926-930.
    • (2011) J. Evol. Biol. , vol.24 , pp. 926-930
    • Chen, Z.1
  • 4
    • 80054727875 scopus 로고    scopus 로고
    • A new association test based on Chi-square partition for case-control GWA studies
    • Chen Z. A new association test based on Chi-square partition for case-control GWA studies. Genet. Epidemiol. 2011, 35:658-663.
    • (2011) Genet. Epidemiol. , vol.35 , pp. 658-663
    • Chen, Z.1
  • 5
    • 84878131186 scopus 로고    scopus 로고
    • Association tests through combining p-values for case control genome-wide association studies
    • Chen Z. Association tests through combining p-values for case control genome-wide association studies. Statist. Probab. Lett. 2013, 83:1854-1862.
    • (2013) Statist. Probab. Lett. , vol.83 , pp. 1854-1862
    • Chen, Z.1
  • 6
    • 84872963418 scopus 로고    scopus 로고
    • Detecting differentially methylated loci for Illumina array methylation data based on human ovarian cancer data
    • Chen Z., Huang H., Liu J., Ng H.K.T., Nadarajah S., Huang X., Deng Y. Detecting differentially methylated loci for Illumina array methylation data based on human ovarian cancer data. BMC Medical Genomics 2013 2013, 6(Suppl 1):S9.
    • (2013) BMC Medical Genomics 2013 , vol.6 , Issue.SUPPL. 1
    • Chen, Z.1    Huang, H.2    Liu, J.3    Ng, H.K.T.4    Nadarajah, S.5    Huang, X.6    Deng, Y.7
  • 7
    • 84964265445 scopus 로고    scopus 로고
    • Testing for Association in Case-Control Genome-wide Association Studies with Shared Controls
    • Statistical Methods in Medical Research, Published online before print February 1, 2013.
    • Chen, Z., Huang, H., Ng, H.K.T., 2013b.Testing for Association in Case-Control Genome-wide Association Studies with Shared Controls. Statistical Methods in Medical Research, Published online before print February 1, 2013. http://dx.doi.org/10.1177/0962280212474061.
    • (2013)
    • Chen, Z.1    Huang, H.2    Ng, H.K.T.3
  • 8
    • 84866897251 scopus 로고    scopus 로고
    • Design and analysis of multiple diseases genome-wide association studies without controls
    • Chen Z., Huang H., Ng H.K.T. Design and analysis of multiple diseases genome-wide association studies without controls. GENE 2012, 510:87-92.
    • (2012) GENE , vol.510 , pp. 87-92
    • Chen, Z.1    Huang, H.2    Ng, H.K.T.3
  • 9
    • 84859750030 scopus 로고    scopus 로고
    • A new statistical approach to detecting differentially methylated loci for case control Illumina array methylation data
    • Chen Z., Liu Q., Nadarajah S. A new statistical approach to detecting differentially methylated loci for case control Illumina array methylation data. Bioinformatics 2012, 28:1109-1113.
    • (2012) Bioinformatics , vol.28 , pp. 1109-1113
    • Chen, Z.1    Liu, Q.2    Nadarajah, S.3
  • 10
    • 80051655198 scopus 로고    scopus 로고
    • A new approach to account for the correlations among single nucleotide polymorphisms in Genome-Wide Association Studies
    • Chen Z., Liu Q. A new approach to account for the correlations among single nucleotide polymorphisms in Genome-Wide Association Studies. Human Heredity 2011, 72:1-9.
    • (2011) Human Heredity , vol.72 , pp. 1-9
    • Chen, Z.1    Liu, Q.2
  • 11
    • 80053468009 scopus 로고    scopus 로고
    • Comments on 'Choosing an optimal method to combine p-values' by Sungho Won, Nathan Morris, Qing Lu and Robert C. Elston
    • Chen Z., Nadarajah S. Comments on 'Choosing an optimal method to combine p-values' by Sungho Won, Nathan Morris, Qing Lu and Robert C. Elston. Statist. Medicine 2009. Statist. Medicine 2009, 30:2959-2961.
    • (2009) Statist. Medicine 2009. Statist. Medicine , vol.30 , pp. 2959-2961
    • Chen, Z.1    Nadarajah, S.2
  • 12
    • 84888300822 scopus 로고    scopus 로고
    • On the optimally weighted z-test for combining probabilities from independent studies
    • Chen Z., Nadarajah S. On the optimally weighted z-test for combining probabilities from independent studies. Comput. Statist. Data Anal. 2014, 70:387-394.
    • (2014) Comput. Statist. Data Anal. , vol.70 , pp. 387-394
    • Chen, Z.1    Nadarajah, S.2
  • 13
    • 84855182978 scopus 로고    scopus 로고
    • A Robust method for testing association in Genome-Wide Association Studies
    • Chen Z., Ng H.K.T. A Robust method for testing association in Genome-Wide Association Studies. Human Heredity 2012, 73:26-34.
    • (2012) Human Heredity , vol.73 , pp. 26-34
    • Chen, Z.1    Ng, H.K.T.2
  • 14
    • 0000642942 scopus 로고
    • Some methods for strengthening the common chi-square tests
    • Cochran W. Some methods for strengthening the common chi-square tests. Biometrics 1954, 10:417-451.
    • (1954) Biometrics , vol.10 , pp. 417-451
    • Cochran, W.1
  • 16
    • 42249087793 scopus 로고    scopus 로고
    • Estimation of significance thresholds for genomewide association scans
    • Dudbridge F., Gusnanto A. Estimation of significance thresholds for genomewide association scans. Genet. Epidemiol. 2008, 32:227-234.
    • (2008) Genet. Epidemiol. , vol.32 , pp. 227-234
    • Dudbridge, F.1    Gusnanto, A.2
  • 17
    • 0001382704 scopus 로고
    • Association of random variables, with applications
    • Esary J.D., Proschan F., Walkup D.W. Association of random variables, with applications. Ann. Math. Statist. 1967, 38:1466-1474.
    • (1967) Ann. Math. Statist. , vol.38 , pp. 1466-1474
    • Esary, J.D.1    Proschan, F.2    Walkup, D.W.3
  • 19
    • 0032885670 scopus 로고    scopus 로고
    • Efficiency robust tests for survival or ordered categorical data
    • Freidlin B., Podgor M.J., Gastwirth J.L. Efficiency robust tests for survival or ordered categorical data. Biometrics 1999, 55:883-886.
    • (1999) Biometrics , vol.55 , pp. 883-886
    • Freidlin, B.1    Podgor, M.J.2    Gastwirth, J.L.3
  • 20
    • 0036364293 scopus 로고    scopus 로고
    • Trend tests for case-control studies of genetic markers: power, sample size and robustness
    • Freidlin B., Zheng G., Li Z., Gastwirth J.L. Trend tests for case-control studies of genetic markers: power, sample size and robustness. Hum. Hered. 2002, 53:146-152.
    • (2002) Hum. Hered. , vol.53 , pp. 146-152
    • Freidlin, B.1    Zheng, G.2    Li, Z.3    Gastwirth, J.L.4
  • 21
    • 43249090541 scopus 로고    scopus 로고
    • A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms
    • Gao X., Starmer J., Martin E.R. A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms. Genet. Epidemiol. 2008, 32:361-369.
    • (2008) Genet. Epidemiol. , vol.32 , pp. 361-369
    • Gao, X.1    Starmer, J.2    Martin, E.R.3
  • 23
    • 0001429974 scopus 로고
    • The use of maximin efficiency robust tests in combining contingency tables and survival analysis
    • Gastwirth J.L. The use of maximin efficiency robust tests in combining contingency tables and survival analysis. J. Amer. Statist. Assoc. 1985, 80:380-384.
    • (1985) J. Amer. Statist. Assoc. , vol.80 , pp. 380-384
    • Gastwirth, J.L.1
  • 25
    • 84899812871 scopus 로고    scopus 로고
    • Accessed [10/10/2012]. A Catalog of Published Genome-Wide Association Studies. Available at:.
    • Hindorff, L., MacArthur, J., Morales, J., Junkins, H.A., Hall, P.N., Klemm, A., Manolio, T.A., Accessed [10/10/2012]. A Catalog of Published Genome-Wide Association Studies. Available at:. http://www.genome.gov/gwastudies.
    • Hindorff, L.1    MacArthur, J.2    Morales, J.3    Junkins, H.A.4    Hall, P.N.5    Klemm, A.6    Manolio, T.A.7
  • 26
    • 84874512191 scopus 로고    scopus 로고
    • Age-adjusted nonparametric detection of differential DNA methylation with case-control designs
    • Huang H., Chen Z., Huang X. Age-adjusted nonparametric detection of differential DNA methylation with case-control designs. BMC Bioinformatics 2013, 14:86.
    • (2013) BMC Bioinformatics , vol.14 , pp. 86
    • Huang, H.1    Chen, Z.2    Huang, X.3
  • 27
    • 77949693572 scopus 로고    scopus 로고
    • Improving power for testing genetic association in case-control studies by reducing the alternative space
    • Joo J., Kwak M., Zheng G. Improving power for testing genetic association in case-control studies by reducing the alternative space. Biometrics 2010, 66:266-276.
    • (2010) Biometrics , vol.66 , pp. 266-276
    • Joo, J.1    Kwak, M.2    Zheng, G.3
  • 28
    • 70450235051 scopus 로고    scopus 로고
    • A robust test for two-stage design in genome-wide association studies
    • Kwak M., Joo J., Zheng G. A robust test for two-stage design in genome-wide association studies. Biometrics 2009, 65:1288-1295.
    • (2009) Biometrics , vol.65 , pp. 1288-1295
    • Kwak, M.1    Joo, J.2    Zheng, G.3
  • 29
    • 84858023800 scopus 로고    scopus 로고
    • Learning from our GWAS mistakes: from experimental design to scientific method
    • Lambert C.G., Black L.J. Learning from our GWAS mistakes: from experimental design to scientific method. Biostatistics 2012, 13:195-203.
    • (2012) Biostatistics , vol.13 , pp. 195-203
    • Lambert, C.G.1    Black, L.J.2
  • 30
    • 30744434862 scopus 로고    scopus 로고
    • Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix
    • Li J., Ji L. Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix. Heredity 2005, 95:221-227.
    • (2005) Heredity , vol.95 , pp. 221-227
    • Li, J.1    Ji, L.2
  • 32
    • 50249187303 scopus 로고    scopus 로고
    • On multiple-testing correction in genome-wide association studies
    • Moskvina V., Schmidt K.M. On multiple-testing correction in genome-wide association studies. Genet. Epidemiol. 2008, 32:567-573.
    • (2008) Genet. Epidemiol. , vol.32 , pp. 567-573
    • Moskvina, V.1    Schmidt, K.M.2
  • 33
    • 73949084229 scopus 로고    scopus 로고
    • Karl Pearson's meta-analysis revisited
    • Owen A.B. Karl Pearson's meta-analysis revisited. Ann. Statist. 2009, 37:3867-3892.
    • (2009) Ann. Statist. , vol.37 , pp. 3867-3892
    • Owen, A.B.1
  • 34
    • 43249125992 scopus 로고    scopus 로고
    • Estimation of the multiple testing burden for genomewide association studies of nearly all common variants
    • Pe'er I., Yelensky R., Altshuler D., Daly M.J. Estimation of the multiple testing burden for genomewide association studies of nearly all common variants. Genet. Epidemiol. 2008, 32:381-385.
    • (2008) Genet. Epidemiol. , vol.32 , pp. 381-385
    • Pe'er, I.1    Yelensky, R.2    Altshuler, D.3    Daly, M.J.4
  • 35
    • 31344435414 scopus 로고    scopus 로고
    • A powerful method of combining measures of association and Hardy-Weinberg disequilibrium for fine-mapping in case-control studies
    • Song K., Elston R.C. A powerful method of combining measures of association and Hardy-Weinberg disequilibrium for fine-mapping in case-control studies. Stat. Med. 2006, 25:105-126.
    • (2006) Stat. Med. , vol.25 , pp. 105-126
    • Song, K.1    Elston, R.C.2
  • 36
    • 84866387516 scopus 로고    scopus 로고
    • Statistical tests of genetic association for case-control study designs
    • Wang K. Statistical tests of genetic association for case-control study designs. Biostatistics 2012, 13:724-733.
    • (2012) Biostatistics , vol.13 , pp. 724-733
    • Wang, K.1
  • 37
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3000 shared controls
    • The Wellcome Trust Case Control Consortium
    • The Wellcome Trust Case Control Consortium Genome-wide association study of 14,000 cases of seven common diseases and 3000 shared controls. Nature 2007, 447:661-678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 38
    • 35748981184 scopus 로고    scopus 로고
    • Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants
    • The Wellcome Trust Case Control Consortium and The Australo-Anglo-American Spondylitis Consortium (WTCCC)
    • The Wellcome Trust Case Control Consortium & The Australo-Anglo-American Spondylitis Consortium (WTCCC) Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants. Nat. Genet. 2007, 39:1329-1337.
    • (2007) Nat. Genet. , vol.39 , pp. 1329-1337
  • 39
    • 0037725301 scopus 로고    scopus 로고
    • Choice of scores in trend tests for case-control studies of candidate gene associations
    • Zheng G., Freidlin B., Li Z., JL G. Choice of scores in trend tests for case-control studies of candidate gene associations. Biometrical J. 2003, 45:335-348.
    • (2003) Biometrical J. , vol.45 , pp. 335-348
    • Zheng, G.1    Freidlin, B.2    Li, Z.3    JL, G.4
  • 40
    • 45849116818 scopus 로고    scopus 로고
    • Genetic model selection in two-phase analysis for case-control association studies
    • Zheng G., Ng H.K. Genetic model selection in two-phase analysis for case-control association studies. Biostatistics 2008, 9:391-399.
    • (2008) Biostatistics , vol.9 , pp. 391-399
    • Zheng, G.1    Ng, H.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.