Erratum: The CpG island encompassing the promoter and first exon of human DNMT3LGene is a PcG/TrX Response Element (PRE) (PLoS ONE (2014) 9, 4, (e93561) DOI:10.1371/journal.pone.0093561);The CpG Island encompassing the promoter and first exon of human DNMT3LGene is a PcG/TrXresponse element (PRE)

PLoS ONE

Volumn 9, Issue 4, 2014, Pages

  Basu, Amitava ^a   Dasari, Vasanthi ^b   Mishra, Rakesh K ^b   Khosla, Sanjeev ^a  

^a CENTRE FOR DNA FINGERPRINTING AND DIAGNOSTICS   (India)

^b CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BMI1 PROTEIN; POLYCOMB GROUP PROTEIN; POLYCOMB REPRESSIVE COMPLEX 2; DNA (CYTOSINE 5) METHYLTRANSFERASE; DNMT3L PROTEIN, HUMAN; DROSOPHILA PROTEIN; HISTONE; NONHISTONE PROTEIN; POLYCOMB PROTEIN, DROSOPHILA; TRITHORAX PROTEIN, DROSOPHILA;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; CPG ISLAND; DNMT3L GENE; EPIGENETIC REPRESSION; EXON; GENE; GENE CONTROL; GENE EXPRESSION; GENE REPRESSION; GENE SEQUENCE; GENE SILENCING; GENETIC TRANSCRIPTION; GENETIC TRANSFECTION; HISTONE MODIFICATION; HUMAN; HUMAN CELL; NONHUMAN; PROMOTER REGION; PROTEIN MODIFICATION; SEQUENCE ANALYSIS; ANIMAL; DNA METHYLATION; DNA RESPONSIVE ELEMENT; DROSOPHILA MELANOGASTER; GENE LOCUS; GENETIC EPIGENESIS; GENETICS; HEK293 CELL LINE; HELA CELL LINE; MALE; METABOLISM; TRANSGENE;

ANIMALS; CHROMOSOMAL PROTEINS, NON-HISTONE; CPG ISLANDS; DNA (CYTOSINE-5-)-METHYLTRANSFERASE; DNA METHYLATION; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EPIGENESIS, GENETIC; EXONS; GENETIC LOCI; HEK293 CELLS; HELA CELLS; HISTONES; HUMANS; MALE; POLYCOMB REPRESSIVE COMPLEX 1; PROMOTER REGIONS, GENETIC; RESPONSE ELEMENTS; TRANSCRIPTION, GENETIC; TRANSFECTION; TRANSGENES;

EID: 84899732775     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0105714     Document Type: Erratum

References (46)

1. Wittkopp PJ, Kalay G (2011) Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence. Nat Rev Genet 13: 59-69.
2. Kleinjan DA, van Heyningen V (2005) Long-range control of gene expression: emerging mechanisms and disruption in disease. Am J Hum Genet 76: 8-32. (Pubitemid 40023762)
3. Francis NJ, Kingston RE (2001) Mechanisms of transcriptional memory. Nat Rev Mol Cell Biol 2: 409-421. (Pubitemid 33680580)
4. Ringrose L, Paro R (2004) Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins. Annu Rev Genet 38: 413-443. (Pubitemid 40013734)
5. Sing A, Pannell D, Karaiskakis A, Sturgeon K, Djabali M, et al. (2009) A vertebrate Polycomb response element governs segmentation of the posterior hindbrain. Cell 138: 885-897.
6. Woo CJ, Kharchenko PV, Daheron L, Park PJ, Kingston RE (2010) A region of the human HOXD cluster that confers polycomb-group responsiveness. Cell 140: 99-110.
7. Chedin F, Lieber MR, Hsieh CL (2002) The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a. Proc Natl Acad Sci USA 99: 16916-16921. (Pubitemid 36034073)
8. Gowher H, Liebert K, Hermann A, Xu G (2005) Mechanism of stimulation of catalytic activity of Dnmt3A and Dnmt3B DNA-(cytosine-C5)-methyltransfer-ases by Dnmt3L. J Biol Chem 280: 13341-13348. (Pubitemid 40517220)
9. Ooi SK, Qiu C, Bernstein E, Li K, Jia D, et al. (2007) DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 448: 714-717. (Pubitemid 47236857)
10. Hashimoto H, Vertino PM, Cheng X (2010) Molecular coupling of DNA methylation and histone methylation. Epigenomics 2: 657-669.
11. Bourc'his D, Xu GL, Lin CS, Bollman B, Brestor TH (2001) Dnmt3L and the establishment of maternal genomic imprints. Science 294: 2536-2539. (Pubitemid 34027291)
12. Arima T, Hata K, Tanaka S, Kusumi M, Li E, et al. (2006) Loss of the maternal imprint in Dnmt3L mat-/-mice leads to a differentiation defect in the extra embryonic tissue. Dev Biol 297: 361-373. (Pubitemid 44376637)
13. Hata K, Okano M, Lei H, Li E (2002) Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in mice. Development 129: 1983-1993. (Pubitemid 34874213)
14. Aapola U, Maenpaa K, Kaipia A, Peterson P (2004) Epigenetic modifications affect DNMT3L expression. Biochem J 380: 205-213.
15. Gokul G, Ramakrishna G, Khosla S (2009) Reprogramming of HeLa cells upon DNMT3L overexpression mimics carcinogenesis. Epigenetics 4: 322-329.
16. Gokul G, Gautami B, Malathi S, Sowjanya AP, Poli UR, et al. (2007) DNA methylation profile at the DNMT3L promoter: a potential biomarker for cervical cancer. Epigenetics 2: 80-85. (Pubitemid 351682000)
17. Manderwad GP, Gokul G, Kannabiran C, Santosh GH, Khosla S, et al. (2010) Hypomethylation of the DNMT3L Promoter in Ocular Surface Squamous Neoplasia. Arch Pathol Lab Med 134: 1193-1196.
18. Ørom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, et al. (2010) Long Noncoding RNAs with Enhancer-like Function in Human Cells. Cell 143: 46-58.
19. Ginjala V, Holmgren C, Ulleras E, Kanduri C, Pant V, et al. (2002) Multiple cis elements within the Igf2/H19 insulator domain organize a distance-dependent silencer. J Biol Chem 277: 5707-5710. (Pubitemid 34968346)
20. Hames BD, Rickwood D. Gel Electrophoresis of Proteins (1998) In: Hames BD, ed. Gel Electrophoresis of Proteins: A Practical Approach Series. Third Edition: Oxford University Press.
21. Voie A, Cohen S (1997) Germ-line Transformation of Drosophila melanogaster. Cell Biology: A Laboratory Handbook, Second Edition: 3, p510-517.
22. Siegal ML, Hartl DL (1996) Transgene Coplacement and High Efficiency Site-Specific Recombination with the Cre/ZoxP System in Drosophila. Genetics 144: 715-726. (Pubitemid 26325862)
23. Sultana H, Verma S, Mishra RK (2011) A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster. Nucleic Acids Res 39: 3543-3557.
24. Schotta G, Ebert A, Reuter G (2003) SU(VAR)3-9 is a conserved key function in heterochromatic gene silencing. Genetica 117: 149-158. (Pubitemid 36678725)
25. Reuter G, Giarre M, Farah J, Gausz J, Spierer A (1990) Dependence of position-effect variegation in Drosophila on dose of a gene encoding an unusual zinc-finger protein. Nature 344: 219-223.
26. Schuettengruber B, Martinez AM, Lovino N, Cavalli G (2011) Trithorax group proteins: switching genes on and keeping them active. Mol Cell Bio 12: 799-14.
27. Müller J, Kassis JA (2006) Polycomb response elements and targeting of Polycomb group proteins in Drosophila. Curr Opin Genet Dev 16: 476-84. (Pubitemid 44345202)
28. Vlag J, Otte AP (1999) Transcriptional repression mediated by the human polycomb-group protein EED involves histone deacetylation. Nat Genet 23: 474-78.
29. Imhof A (2006) Epigenetic regulators and histone modification. Brief Funct Genomics Proteomic 5: 222-227. (Pubitemid 46470222)
30. Peterson CL, Laniel MA (2004) Histones and histone modifications. Curr Biol 14: 546-551.
31. Schuettengruber B, Chourrout D, Vervoort M, Leblanc B, Cavalli G (2007) Genome Regulation by Polycomb and Trithorax Proteins. Cell 128: 735-745. (Pubitemid 46273581)
32. Mahmoudi T, Verrijzer CP (2001) Chromatin silencing and activation by Polycomb and trithorax group proteins. Oncogene 20: 3055-3066. (Pubitemid 32553560)
33. Zachary DS, Alexander M (2013) DNA methylation: roles in mammalian development Nat Rev Gen 14, 204-220
34. Jones PA, Baylin SB (2007) The Epigenomics of Cancer. Cell 128: 683-692. (Pubitemid 46273572)
35. Wang L, Brown JL, Cao R, Zhang Y, Kassis JA, et al. (2004) Hierarchical recruitment of polycomb group silencing complexes. Mol Cell 14: 637-646. (Pubitemid 38739085)
36. Schwartz YB, Kahn TG, Dellino GI, Pirrotta V (2004) Polycomb silencing mechanisms in Drosophila. Cold Spring Harb Symp Quant Biol 69: 301-308. (Pubitemid 41056567)
37. Surface LE, Thornton SR, Boyer LA (2010) Polycomb group proteins set the stage for early lineage commitment. Cell Stem Cell 7: 288-298.
38. Nestorov P, Tardat M, Peters AH (2013) H3K9/HP1 and Polycomb: two key epigenetic silencing pathways for gene regulation and embryo development. Curr Top Dev Biol 104: 243-291.
39. Grewal SI, Jia S (2007) Heterochromatin revisited. Nat Rev Genet 8: 35-46. (Pubitemid 46006048)
40. Krouwels IM, Weismeijer K, Abraham TE, Molenaar C, Verwoerd NP, et al. (2005) A glue for heterochromatin maintenance: stable SUV39H1 binding to heterochromatin is reinforced by the SET domain. J Cell Biol 170: 537-549. (Pubitemid 41186929)
41. Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, et al. (2008) Genome wide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet 4: e1000242.
42. Mendenhall EM, Koche RP, Truong T, Zhou VW, Issac B, et al. (2010) GC-rich sequence elements recruit PRC2 in mammalian ES cells. PLoS Genet 6:e1001244.
43. Lynch MD, Smith AJ, De Gobbi M, Flenley M, Hughes JR, et al. (2012) An interspecies analysis reveals a key role for unmethylated CpG dinucleotides in vertebrate Polycomb complex recruitment. EMBO J 31:317-29.
44. Hwang KK, Eissenberg JC, Worman HJ (2001) Transcriptional repression of euchromatic genes by Drosophila heterochromatin protein 1 and histone modifiers. Proc Natl Acad Sci USA 98: 11423-11427. (Pubitemid 32928744)
45. Zhang D, Wang D, Sun F (2011) Drosophila melanogaster heterochromatin protein HP1b plays important roles in transcriptional activation and development. Chromosoma 120: 97-108.
46. Shiota M, Song Y, Yokomizo A, Tada Y, Kuroiwa K, Eto M, et al. (2010) Human heterochromatin protein 1 isoform HP1b enhances androgen receptor activity and is implicated in prostate cancer growth. Endocr Relat Cancer 17: 455-467.