Wild-type measles viruses with non-standard genome lengths

PLoS ONE

Volumn 9, Issue 4, 2014, Pages

  Bankamp, Bettina ^a   Liu, Chunyu ^a,b   Rivailler, Pierre ^a   Bera, Jayati ^c   Shrivastava, Susmita ^c   Kirkness, Ewen F ^c   Bellini, William J ^a   Rota, Paul A ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b INSTITUTE OF PATHOGEN BIOLOGY   (China)

^c J CRAIG VENTER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; FUSION GENE; GENE REPLICATION; GENE SEQUENCE; GENOTYPE; IMMUNOFLUORESCENCE TEST; INTERGENERIC HYBRIDIZATION; MEASLES VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS ISOLATION; VIRUS TRANSMISSION; ANIMAL; CELL LINE; CLASSIFICATION; CYTOPATHOGENIC EFFECT; GENE ORDER; GENETICS; GENOME SIZE; HUMAN; INDEL MUTATION; MOLECULAR GENETICS; PHYLOGENY; UNTRANSLATED REGION;

UNTRANSLATED REGION; VIRUS RNA;

ANIMALS; CELL LINE; CYTOPATHOGENIC EFFECT, VIRAL; GENE ORDER; GENOME SIZE; GENOME, VIRAL; GENOTYPE; HUMANS; INDEL MUTATION; MEASLES VIRUS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; UNTRANSLATED REGIONS;

EID: 84899692574     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0095470     Document Type: Article

References (51)

1. Rima BK, Duprex WP (2009) The measles virus replication cycle. Curr Top Microbiol Immunol 329: 77-102.
2. Bellini WJ, Englund G, Richardson CD, Rozenblatt S, Lazzarini RA (1986) Matrix genes of measles virus and canine distemper virus: cloning, nucleotide sequences, and deduced amino acid sequences. J Virol 58: 408-416. (Pubitemid 16013633)
3. Richardson C, Hull D, Greer P, Hasel K, Berkovich A, et al. (1986) The nucleotide sequence of the mRNA encoding the fusion protein of measles virus (Edmonston strain): a comparison of fusion proteins from several different paramyxoviruses. Virology 155: 508-523. (Pubitemid 17226255)
4. Heider A, Santibanez S, Tischer A, Gerike E, Tikhonova N, et al. (1997) Comparative investigation of the long non-coding M-F genome region of wild-type and vaccine measles viruses. Arch Virol 142: 2521-2528. (Pubitemid 28017271)
5. Anderson DE, Castan A, Bisaillon M, von Messling V (2012) Elements in the canine distemper virus M 3′ UTR contribute to control of replication efficiency and virulence. PLoS One 7: e31561.
6. Anderson DE, von Messling V (2008) Region between the canine distemper virus M and F genes modulates virulence by controlling fusion protein expression. J Virol 82: 10510-10518. (Pubitemid 352691156)
7. Cathomen T, Buchholz CJ, Spielhofer P, Cattaneo R (1995) Preferential initiation at the second AUG of the measles virus F mRNA: a role for the long untranslated region. Virology 214: 628-632. (Pubitemid 26027790)
8. Takeda M, Ohno S, Seki F, Nakatsu Y, Tahara M, et al. (2005) Long untranslated regions of the measles virus M and F genes control virus replication and cytopathogenicity. J Virol 79: 14346-14354. (Pubitemid 41552732)
9. Lamb RA, Parks CL (2013) Paramyxoviridae. In: Knipe DM, Howley PM, editors. Fields Virology. Philadelphia: Lippincott, Williams & Wilkins. pp. 957-995.
10. Calain P, Roux L (1993) The rule of six, a basic feature for efficient replication of Sendai virus defective interfering RNA. J Virol 67: 4822-4830. (Pubitemid 23215963)
11. Brandler S, Lucas-Hourani M, Moris A, Frenkiel MP, Combredet C, et al. (2007) Pediatric measles vaccine expressing a dengue antigen induces durable serotype-specific neutralizing antibodies to dengue virus. PLoS Negl Trop Dis 1: e96.
12. Hashimoto K, Ono N, Tatsuo H, Minagawa H, Takeda M, et al. (2002) SLAM (CD150)-independent measles virus entry as revealed by recombinant virus expressing green fluorescent protein. J Virol 76: 6743-6749. (Pubitemid 34633540)
13. Iankov ID, Federspiel MJ, Galanis E (2013) Measles virus expressed Helicobacter pylori neutrophil-activating protein significantly enhances the immunogenicity of poor immunogens. Vaccine 31: 4795-4801.
14. Sidhu MS, Chan J, Kaelin K, Spielhofer P, Radecke F, et al. (1995) Rescue of synthetic measles virus minireplicons: measles genomic termini direct efficient expression and propagation of a reporter gene. Virology 208: 800-807.
15. Rota PA, Brown K, Mankertz A, Santibanez S, Shulga S, et al. (2011) Global distribution of measles genotypes and measles molecular epidemiology. J Infect Dis 204 Suppl 1: S514-523.
16. Rota PA, Brown KE, Hubschen JM, Muller CP, Icenogle J, et al. (2011) Improving global virologic surveillance for measles and rubella. J Infect Dis 204 Suppl 1: S506-513.
17. World Health Organization (2001) Nomenclature for describing the genetic characteristics of wild-type measles viruses (update). Part I. Wkly Epidemiol Rec 76: 242-247.
18. World Health Organization (2012) Measles virus nomenclature update: 2012. Wkly Epidemiol Rec 87: 73-81.
19. Kessler JR, Kremer JR, Shulga SV, Tikhonova NT, Santibanez S, et al. (2011) Revealing new measles virus transmission routes by use of sequence analysis of phosphoprotein and hemagglutinin genes. J Clin Microbiol 49: 677-683.
20. Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, et al. (2008) Novel computational methods for increasing PCR primer design effectiveness in directed sequencing. BMC Bioinformatics 9: 191.
21. Li K, Shrivastava S, Brownley A, Katzel D, Bera J, et al. (2012) Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing. Virol J 9: 261.
22. Wang S, Sundaram JP, Spiro D (2010) VIGOR, an annotation program for small viral genomes. BMC Bioinformatics 11: 451.
23. Ono N, Tatsuo H, Hidaka Y, Aoki T, Minagawa H, et al. (2001) Measles viruses on throat swabs from measles patients use signaling lymphocytic activation molecule (CDw150) but not CD46 as a cellular receptor. J Virol 75: 4399-4401. (Pubitemid 32410152)
24. Schrag SJ, Rota PA, Bellini WJ (1999) Spontaneous mutation rate of measles virus: direct estimation based on mutations conferring monoclonal antibody resistance. J Virol 73: 51-54. (Pubitemid 28565345)
25. Hierholzer JC, Killington RA (1996) Virus Isolation and Quantitation. In: Mahy BWJ, Kangro HO, editors. Virology Methods Manual. London, San Diego: Academic Press. pp. 24-32.
26. Tatsuo H, Ono N, Tanaka K, Yanagi Y (2000) SLAM (CDw150) is a cellular receptor for measles virus. Nature 406: 893-897. (Pubitemid 30664265)
27. Griffin DE, Lin WH, Pan CH (2012) Measles virus, immune control, and persistence. FEMS Microbiol Rev 36: 649-662.
28. Bankamp B, Hodge G, McChesney MB, Bellini WJ, Rota PA (2008) Genetic changes that affect the virulence of measles virus in a rhesus macaque model. Virology 373: 39-50.
29. Takeda M, Kato A, Kobune F, Sakata H, Li Y, et al. (1998) Measles virus attenuation associated with transcriptional impediment and a few amino acid changes in the polymerase and accessory proteins. J Virol 72: 8690-8696. (Pubitemid 28471809)
30. Takeuchi K, Miyajima N, Kobune F, Tashiro M (2000) Comparative nucleotide sequence analyses of the entire genomes of B95a cell-isolated and vero cell-isolated measles viruses from the same patient. Virus Genes 20: 253-257. (Pubitemid 30479544)
31. Liu X, Bankamp B, Xu W, Bellini WJ, Rota PA (2006) The genomic termini of wild-type and vaccine strains of measles virus. Virus Res 122: 78-84. (Pubitemid 44740330)
32. Baczko K, Liebert UG, Cattaneo R, Billeter MA, Roos RP, et al. (1988) Restriction of measles virus gene expression in measles inclusion body encephalitis. J Infect Dis 158: 144-150.
33. Cattaneo R, Rose JK (1993) Cell fusion by the envelope glycoproteins of persistent measles viruses which caused lethal human brain disease. J Virol 67: 1493-1502. (Pubitemid 23067656)
34. Cattaneo R, Schmid A, Billeter MA, Sheppard RD, Udem SA (1988) Multiple viral mutations rather than host factors cause defective measles virus gene expression in a subacute sclerosing panencephalitis cell line. J Virol 62: 1388-1397. (Pubitemid 18082954)
35. Cattaneo R, Schmid A, Eschle D, Baczko K, ter Meulen V, et al. (1988) Biased hypermutation and other genetic changes in defective measles viruses in human brain infections. Cell 55: 255-265.
36. Liebert UG, Baczko K, Budka H, ter Meulen V (1986) Restricted expression of measles virus proteins in brains from cases of subacute sclerosing panencephalitis. J Gen Virol 67 (Pt 11): 2435-2444. (Pubitemid 17179535)
37. Schmid A, Spielhofer P, Cattaneo R, Baczko K, ter Meulen V, et al. (1992) Subacute sclerosing panencephalitis is typically characterized by alterations in the fusion protein cytoplasmic domain of the persisting measles virus. Virology 188: 910-915.
38. Baricevic M, Forcic D, Santak M, Mazuran R (2007) A comparison of complete untranslated regions of measles virus genomes derived from wild-type viruses and SSPE brain tissues. Virus Genes 35: 17-27. (Pubitemid 46751905)
39. Dong JB, Saito A, Mine Y, Sakuraba Y, Nibe K, et al. (2009) Adaptation of wild-type measles virus to cotton rat lung cells: E89K mutation in matrix protein contributes to its fitness. Virus Genes 39: 330-334.
40. Denver DR, Morris K, Kewalramani A, Harris KE, Chow A, et al. (2004) Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans. J Mol Evol 58: 584-595. (Pubitemid 38609893)
41. Wernegreen JJ, Kauppinen SN, Degnan PH (2010) Slip into something more functional: selection maintains ancient frameshifts in homopolymeric sequences. Mol Biol Evol 27: 833-839.
42. Cattaneo R, Kaelin K, Baczko K, Billeter MA (1989) Measles virus editing provides an additional cysteine-rich protein. Cell 56: 759-764. (Pubitemid 19082510)
43. Vidal S, Curran J, Kolakofsky D (1990) A stuttering model for paramyxovirus P mRNA editing. EMBO J 9: 2017-2022.
44. Zhang X, Rennick LJ, Duprex WP, Rima BK (2013) Determination of spontaneous mutation frequencies in measles virus under nonselective conditions. J Virol 87: 2686-2692.
45. Radecke F, Spielhofer P, Schneider H, Kaelin K, Huber M, et al. (1995) Rescue of measles viruses from cloned DNA. EMBO J 14: 5773-5784.
46. Valsamakis A, Schneider H, Auwaerter PG, Kaneshima H, Billeter MA, et al. (1998) Recombinant measles viruses with mutations in the C, V, or F gene have altered growth phenotypes in vivo. J Virol 72: 7754-7761. (Pubitemid 28421765)
47. Emeny JM, Morgan MJ (1979) Regulation of the interferon system: evidence that Vero cells have a genetic defect in interferon production. J Gen Virol 43: 247-252. (Pubitemid 9181666)
48. Kremer JR, Brown KE, Jin L, Santibanez S, Shulga SV, et al. (2008) High genetic diversity of measles virus, World Health Organization European Region, 2005-2006. Emerg Infect Dis 14: 107-114.
49. Mankertz A, Mihneva Z, Gold H, Baumgarte S, Baillot A, et al. (2011) Spread of measles virus D4-Hamburg, Europe, 2008-2011. Emerg Infect Dis 17: 1396-1401.
50. Wairagkar N, Chowdhury D, Vaidya S, Sikchi S, Shaikh N, et al. (2011) Molecular epidemiology of measles in India, 2005-2010. J Infect Dis 204 Suppl 1: S403-413.
51. Knol M, Urbanus A, Swart E, Mollema L, Ruijs W, et al. (2013) Large ongoing measles outbreak in a religious community in the Netherlands since May 2013. Euro Surveill 18: pii = 20580.