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Volumn 111, Issue 17, 2014, Pages 6419-6424

Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi

Author keywords

13C isotope analysis; Acetyl CoA synthase; Reductive dechlorination

Indexed keywords

5 METHYLTETRAHYDROFOLIC ACID; 5,10 METHYLENETETRAHYDROFOLATE REDUCTASE (FADH2); ACETYL COENZYME A; CARBON MONOXIDE; CARBON MONOXIDE DEHYDROGENASE; METHIONINE; ORGANOHALOGEN DERIVATIVE; SERINE; UNCLASSIFIED DRUG; WOOD LJUNGDAHL PROTEIN;

EID: 84899621607     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1321542111     Document Type: Article
Times cited : (89)

References (47)
  • 1
    • 54949153045 scopus 로고    scopus 로고
    • Acetogenesis and the Wood-Ljungdahl pathway of CO2 fixation
    • Ragsdale SW, Pierce E (2008) Acetogenesis and the Wood-Ljungdahl pathway of CO2 fixation. Biochim Biophys Acta 1784(12):1873-1898.
    • (2008) Biochim Biophys Acta , vol.1784 , Issue.12 , pp. 1873-1898
    • Ragsdale, S.W.1    Pierce, E.2
  • 2
    • 80053227684 scopus 로고    scopus 로고
    • Alternative pathways of carbon dioxide fixation: Insights into the early evolution of life?
    • Fuchs G (2011) Alternative pathways of carbon dioxide fixation: Insights into the early evolution of life? Annu Rev Microbiol 65:631-658.
    • (2011) Annu Rev Microbiol , vol.65 , pp. 631-658
    • Fuchs, G.1
  • 4
    • 0012202830 scopus 로고
    • Variations of the acetyl-CoA pathway in diversely related microorganisms that are not acetogens
    • ed Drake H (Springer, New York)
    • Fuchs G (1995) Variations of the acetyl-CoA pathway in diversely related microorganisms that are not acetogens. Acetogenesis, Chapman & Hall Microbiology Series, ed Drake H (Springer, New York), pp 507-520.
    • (1995) Acetogenesis, Chapman & Hall Microbiology Series , pp. 507-520
    • Fuchs, G.1
  • 5
    • 0025365326 scopus 로고
    • Method for isolation of auxotrophs in the methanogenic archaebacteria: Role of the acetyl-CoA pathway of autotrophic CO2 fixation in Methanococcus maripaludis
    • Ladapo J, Whitman WB (1990) Method for isolation of auxotrophs in the methanogenic archaebacteria: Role of the acetyl-CoA pathway of autotrophic CO2 fixation in Methanococcus maripaludis. Proc Natl Acad Sci USA 87(15):5598-5602.
    • (1990) Proc Natl Acad Sci USA , vol.87 , Issue.15 , pp. 5598-5602
    • Ladapo, J.1    Whitman, W.B.2
  • 6
    • 0022526191 scopus 로고
    • The autotrophic pathway of acetate synthesis in acetogenic bacteria
    • Ljungdahl LG (1986) The autotrophic pathway of acetate synthesis in acetogenic bacteria. Annu Rev Microbiol 40:415-450.
    • (1986) Annu Rev Microbiol , vol.40 , pp. 415-450
    • Ljungdahl, L.G.1
  • 7
    • 2942590219 scopus 로고    scopus 로고
    • Stable carbon isotopic fractionations associated with inorganic carbon fixation by anaerobic ammonium-oxidizing bacteria
    • Schouten S, et al. (2004) Stable carbon isotopic fractionations associated with inorganic carbon fixation by anaerobic ammonium-oxidizing bacteria. Appl Environ Microbiol 70(6):3785-3788.
    • (2004) Appl Environ Microbiol , vol.70 , Issue.6 , pp. 3785-3788
    • Schouten, S.1
  • 8
    • 0346456855 scopus 로고    scopus 로고
    • A functional Ni-Ni-[4Fe-4S] cluster in the monomeric acetyl-CoA synthase from Carboxydothermus hydrogenoformans
    • Svetlitchnyi V, et al. (2004) A functional Ni-Ni-[4Fe-4S] cluster in the monomeric acetyl-CoA synthase from Carboxydothermus hydrogenoformans. Proc Natl Acad Sci USA 101(2):446-451.
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.2 , pp. 446-451
    • Svetlitchnyi, V.1
  • 9
    • 0026112556 scopus 로고
    • Life with CO or CO2 and H2 as a source of carbon and energy
    • Wood HG (1991) Life with CO or CO2 and H2 as a source of carbon and energy. FASEB J 5(2):156-163.
    • (1991) FASEB J , vol.5 , Issue.2 , pp. 156-163
    • Wood, H.G.1
  • 10
    • 27144500225 scopus 로고    scopus 로고
    • Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1
    • Kube M, et al. (2005) Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1. Nat Biotechnol 23(10):1269-1273.
    • (2005) Nat Biotechnol , vol.23 , Issue.10 , pp. 1269-1273
    • Kube, M.1
  • 11
    • 73649122427 scopus 로고    scopus 로고
    • Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides
    • McMurdie PJ, et al. (2009) Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 5(11):e1000714.
    • (2009) PLoS Genet , vol.5 , Issue.11
    • McMurdie, P.J.1
  • 12
    • 19944426081 scopus 로고    scopus 로고
    • Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
    • Seshadri R, et al. (2005) Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science 307(5706):105-108.
    • (2005) Science , vol.307 , Issue.5706 , pp. 105-108
    • Seshadri, R.1
  • 13
    • 84874041126 scopus 로고    scopus 로고
    • Dehalococcoides mccartyi gen. Nov., sp. Nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. Nov and family Dehalococcoidaceae fam. Nov., within the phylum Chloroflexi
    • Löffler FE, et al. (2013) Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi. Int J Syst Evol Microbiol 63(Pt 2):625-635.
    • (2013) Int J Syst Evol Microbiol , vol.63 , Issue.PART 2 , pp. 625-635
    • Löffler, F.E.1
  • 14
    • 0015937408 scopus 로고
    • The biosynthesis of methionine
    • Rüdiger H, Jaenicke L (1973) The biosynthesis of methionine. Mol Cell Biochem 1(2): 157-168.
    • (1973) Mol Cell Biochem , vol.1 , Issue.2 , pp. 157-168
    • Rüdiger, H.1    Jaenicke, L.2
  • 15
    • 34248211608 scopus 로고    scopus 로고
    • Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium
    • He JZ, Holmes VF, Lee PKH, Alvarez-Cohen L (2007) Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium. Appl Environ Microbiol 73(9):2847-2853.
    • (2007) Appl Environ Microbiol , vol.73 , Issue.9 , pp. 2847-2853
    • He, J.Z.1    Holmes, V.F.2    Lee, P.K.H.3    Alvarez-Cohen, L.4
  • 16
    • 67749139566 scopus 로고    scopus 로고
    • Investigation of carbon metabolism in "dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses
    • Tang YJ, et al. (2009) Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses. J Bacteriol 191(16):5224-5231.
    • (2009) J Bacteriol , vol.191 , Issue.16 , pp. 5224-5231
    • Tang, Y.J.1
  • 17
    • 0041387671 scopus 로고    scopus 로고
    • Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation
    • Rückert C, Pühler A, Kalinowski J (2003) Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation. J Biotechnol 104(1-3):213-228.
    • (2003) J Biotechnol , vol.104 , Issue.1-3 , pp. 213-228
    • Rückert, C.1    Pühler, A.2    Kalinowski, J.3
  • 18
    • 84866330737 scopus 로고    scopus 로고
    • Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1
    • Marco-Urrea E, Seifert J, von Bergen M, Adrian L (2012) Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1. J Bacteriol 194(16):4169-4177.
    • (2012) J Bacteriol , vol.194 , Issue.16 , pp. 4169-4177
    • Marco-Urrea, E.1    Seifert, J.2    Von Bergen, M.3    Adrian, L.4
  • 19
    • 64549086777 scopus 로고    scopus 로고
    • Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195
    • Johnson DR, Nemir A, Andersen GL, Zinder SH, Alvarez-Cohen L (2009) Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195. FEMS Microbiol Lett 294(2):198-206.
    • (2009) FEMS Microbiol Lett , vol.294 , Issue.2 , pp. 198-206
    • Johnson, D.R.1    Nemir, A.2    Andersen, G.L.3    Zinder, S.H.4    Alvarez-Cohen, L.5
  • 20
    • 43049147593 scopus 로고    scopus 로고
    • Temporal transcriptomic microarray analysis of "dehalococcoides ethenogenes" strain 195 during the transition into stationary phase
    • Johnson DR, et al. (2008) Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl Environ Microbiol 74(9):2864-2872.
    • (2008) Appl Environ Microbiol , vol.74 , Issue.9 , pp. 2864-2872
    • Johnson, D.R.1
  • 21
    • 84855937815 scopus 로고    scopus 로고
    • Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: Global transcriptomic and proteomic analyses
    • Men Y, et al. (2012) Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: Global transcriptomic and proteomic analyses. ISME J 6(2):410-421.
    • (2012) ISME J , vol.6 , Issue.2 , pp. 410-421
    • Men, Y.1
  • 22
    • 78049442430 scopus 로고    scopus 로고
    • Characterizing the metabolism of Dehalococcoides with a constraint-based model
    • Ahsanul Islam M, Edwards EA, Mahadevan R (2010) Characterizing the metabolism of Dehalococcoides with a constraint-based model. PLOS Comput Biol 6(8):e1000887.
    • (2010) PLOS Comput Biol , vol.6 , Issue.8
    • Ahsanul Islam, M.1    Edwards, E.A.2    Mahadevan, R.3
  • 24
    • 84857010419 scopus 로고    scopus 로고
    • Metabolic pathway confirmation and discovery through 13C-labeling of proteinogenic amino acids
    • You L, et al. (2012) Metabolic pathway confirmation and discovery through 13C-labeling of proteinogenic amino acids. J Vis Exp (59):e3583.
    • (2012) J Vis Exp , Issue.59
    • You, L.1
  • 25
    • 83155178366 scopus 로고    scopus 로고
    • Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity
    • Zhuang W-Q, et al. (2011) Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity. Appl Environ Microbiol 77(21):7797-7803.
    • (2011) Appl Environ Microbiol , vol.77 , Issue.21 , pp. 7797-7803
    • Zhuang, W.-Q.1
  • 26
    • 0037898938 scopus 로고    scopus 로고
    • Pyruvate ferredoxin oxidoreductase and its radical intermediate
    • Ragsdale SW (2003) Pyruvate ferredoxin oxidoreductase and its radical intermediate. Chem Rev 103(6):2333-2346.
    • (2003) Chem Rev , vol.103 , Issue.6 , pp. 2333-2346
    • Ragsdale, S.W.1
  • 27
    • 0344622120 scopus 로고    scopus 로고
    • Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
    • Maymó-Gatell X, Chien Y-T, Gossett JM, Zinder SH (1997) Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276(5318):1568-1571.
    • (1997) Science , vol.276 , Issue.5318 , pp. 1568-1571
    • Maymó-Gatell, X.1    Chien, Y.-T.2    Gossett, J.M.3    Zinder, S.H.4
  • 28
    • 84859466163 scopus 로고    scopus 로고
    • Redox-dependent complex formation by an ATP-dependent activator of the corrinoid/iron-sulfur protein
    • Hennig SE, Jeoung JH, Goetzl S, Dobbek H (2012) Redox-dependent complex formation by an ATP-dependent activator of the corrinoid/iron-sulfur protein. Proc Natl Acad Sci USA 109(14):5235-5240.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.14 , pp. 5235-5240
    • Hennig, S.E.1    Jeoung, J.H.2    Goetzl, S.3    Dobbek, H.4
  • 29
    • 33749644161 scopus 로고    scopus 로고
    • Interrelations between glycine betaine catabolism and methionine biosynthesis in Sinorhizobium meliloti strain 102F34
    • Barra L, et al. (2006) Interrelations between glycine betaine catabolism and methionine biosynthesis in Sinorhizobium meliloti strain 102F34. J Bacteriol 188(20): 7195-7204.
    • (2006) J Bacteriol , vol.188 , Issue.20 , pp. 7195-7204
    • Barra, L.1
  • 30
    • 46949093230 scopus 로고    scopus 로고
    • Proteomic analysis of stationary phase in the marine bacterium "candidatus Pelagibacter ubique"
    • Sowell SM, et al. (2008) Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique". Appl Environ Microbiol 74(13):4091-4100.
    • (2008) Appl Environ Microbiol , vol.74 , Issue.13 , pp. 4091-4100
    • Sowell, S.M.1
  • 31
    • 3042639887 scopus 로고    scopus 로고
    • Comparative genomics of the methionine metabolism in Gram-positive bacteria: A variety of regulatory systems
    • Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS (2004) Comparative genomics of the methionine metabolism in Gram-positive bacteria: A variety of regulatory systems. Nucleic Acids Res 32(11):3340-3353.
    • (2004) Nucleic Acids Res , vol.32 , Issue.11 , pp. 3340-3353
    • Rodionov, D.A.1    Vitreschak, A.G.2    Mironov, A.A.3    Gelfand, M.S.4
  • 32
    • 84867609258 scopus 로고    scopus 로고
    • Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: The role of the non-dechlorinating community
    • Hug LA, Beiko RG, Rowe AR, Richardson RE, Edwards EA (2012) Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: The role of the non-dechlorinating community. BMC Genomics 13:327.
    • (2012) BMC Genomics , vol.13 , pp. 327
    • Hug, L.A.1    Beiko, R.G.2    Rowe, A.R.3    Richardson, R.E.4    Edwards, E.A.5
  • 33
    • 0003688056 scopus 로고
    • Oxidative and reductive acetyl CoA/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum
    • Schauder R, Preuß A, Jetten M, Fuchs G (1988) Oxidative and reductive acetyl CoA/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum. Arch Microbiol 151(1):84-89.
    • (1988) Arch Microbiol , vol.151 , Issue.1 , pp. 84-89
    • Schauder, R.1    Preuß, A.2    Jetten, M.3    Fuchs, G.4
  • 34
    • 47549119041 scopus 로고    scopus 로고
    • Methanogenic archaea: Ecologically relevant differences in energy conservation
    • Thauer RK, Kaster AK, Seedorf H, Buckel W, Hedderich R (2008) Methanogenic archaea: Ecologically relevant differences in energy conservation. Nat Rev Microbiol 6(8):579-591.
    • (2008) Nat Rev Microbiol , vol.6 , Issue.8 , pp. 579-591
    • Thauer, R.K.1    Kaster, A.K.2    Seedorf, H.3    Buckel, W.4    Hedderich, R.5
  • 35
    • 4444331541 scopus 로고    scopus 로고
    • Life with carbon monoxide
    • Ragsdale SW (2004) Life with carbon monoxide. Crit Rev Biochem Mol Biol 39(3): 165-195.
    • (2004) Crit Rev Biochem Mol Biol , vol.39 , Issue.3 , pp. 165-195
    • Ragsdale, S.W.1
  • 36
    • 79957999964 scopus 로고    scopus 로고
    • Carbon monoxide as an electron donor for the biological reduction of sulphate
    • Parshina SN, Sipma J, Henstra AM, Stams AJ (2010) Carbon monoxide as an electron donor for the biological reduction of sulphate. Int J Microbiol 2010:319527.
    • (2010) Int J Microbiol , vol.2010 , pp. 319527
    • Parshina, S.N.1    Sipma, J.2    Henstra, A.M.3    Stams, A.J.4
  • 37
    • 0033214609 scopus 로고    scopus 로고
    • Purification and catalytic properties of Ech hydrogenase from Methanosarcina barkeri
    • Meuer J, Bartoschek S, Koch J, Künkel A, Hedderich R (1999) Purification and catalytic properties of Ech hydrogenase from Methanosarcina barkeri. Eur J Biochem 265(1): 325-335.
    • (1999) Eur J Biochem , vol.265 , Issue.1 , pp. 325-335
    • Meuer, J.1    Bartoschek, S.2    Koch, J.3    Künkel, A.4    Hedderich, R.5
  • 38
    • 0028933835 scopus 로고
    • Substrate and accessory protein requirements and thermodynamics of acetyl-CoA synthesis and cleavage in Methanosarcina barkeri
    • Grahame DA, DeMoll E (1995) Substrate and accessory protein requirements and thermodynamics of acetyl-CoA synthesis and cleavage in Methanosarcina barkeri. Biochemistry 34(14):4617-4624.
    • (1995) Biochemistry , vol.34 , Issue.14 , pp. 4617-4624
    • Grahame, D.A.1    Demoll, E.2
  • 40
    • 33751020235 scopus 로고    scopus 로고
    • Microbial composition of chlorinated ethenedegrading cultures dominated by Dehalococcoides
    • Duhamel M, Edwards EA (2006) Microbial composition of chlorinated ethenedegrading cultures dominated by Dehalococcoides. FEMS Microbiol Ecol 58(3):538-549.
    • (2006) FEMS Microbiol Ecol , vol.58 , Issue.3 , pp. 538-549
    • Duhamel, M.1    Edwards, E.A.2
  • 41
    • 84879842816 scopus 로고    scopus 로고
    • Characterization of four TCEdechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions
    • Men Y, Lee PK, Harding KC, Alvarez-Cohen L (2013) Characterization of four TCEdechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions. Appl Microbiol Biotechnol 97(14):6439-6450.
    • (2013) Appl Microbiol Biotechnol , vol.97 , Issue.14 , pp. 6439-6450
    • Men, Y.1    Lee, P.K.2    Harding, K.C.3    Alvarez-Cohen, L.4
  • 42
    • 49749116772 scopus 로고    scopus 로고
    • Carbon monoxide-dependent energy metabolism in anaerobic bacteria and archaea
    • Oelgeschläger E, Rother M (2008) Carbon monoxide-dependent energy metabolism in anaerobic bacteria and archaea. Arch Microbiol 190(3):257-269.
    • (2008) Arch Microbiol , vol.190 , Issue.3 , pp. 257-269
    • Oelgeschläger, E.1    Rother, M.2
  • 43
    • 0026317878 scopus 로고
    • Resolution of component proteins in an enzyme complex from Methanosarcina thermophila catalyzing the synthesis or cleavage of acetyl-CoA
    • Abbanat DR, Ferry JG (1991) Resolution of component proteins in an enzyme complex from Methanosarcina thermophila catalyzing the synthesis or cleavage of acetyl-CoA. Proc Natl Acad Sci USA 88(8):3272-3276.
    • (1991) Proc Natl Acad Sci USA , vol.88 , Issue.8 , pp. 3272-3276
    • Abbanat, D.R.1    Ferry, J.G.2
  • 44
    • 0033005876 scopus 로고    scopus 로고
    • Enzymology of one-carbon metabolism in methanogenic pathways
    • Ferry JG (1999) Enzymology of one-carbon metabolism in methanogenic pathways. FEMS Microbiol Rev 23(1):13-38.
    • (1999) FEMS Microbiol Rev , vol.23 , Issue.1 , pp. 13-38
    • Ferry, J.G.1
  • 45
  • 46
    • 0842343470 scopus 로고    scopus 로고
    • New tools for mass isotopomer data evaluation in 13C flux analysis: Mass isotope correction, data consistency checking, and precursor relationships
    • Wahl SA, Dauner M, Wiechert W (2004) New tools for mass isotopomer data evaluation in 13C flux analysis: Mass isotope correction, data consistency checking, and precursor relationships. Biotechnol Bioeng 85(3):259-268.
    • (2004) Biotechnol Bioeng , vol.85 , Issue.3 , pp. 259-268
    • Wahl, S.A.1    Dauner, M.2    Wiechert, W.3
  • 47
    • 51649124894 scopus 로고    scopus 로고
    • The complete genome sequence of Moorella thermoacetica (f
    • Pierce E, et al. (2008) The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum). Environ Microbiol 10(10):2550-2573.
    • (2008) Clostridium Thermoaceticum). Environ Microbiol , vol.10 , Issue.10 , pp. 2550-2573
    • Pierce, E.1


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