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Volumn 2014, Issue , 2014, Pages

RNA sequencing reveals upregulation of RUNX1-RUNX1T1 gene signatures in clear cell renal cell carcinoma

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR RUNX1; TRANSCRIPTION FACTOR RUNX1T1; TRANSCRIPTOME; UNCLASSIFIED DRUG; ONCOPROTEIN; RNA; RUNX1 PROTEIN, HUMAN; RUNX1T1 PROTEIN, HUMAN;

EID: 84899547426     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2014/450621     Document Type: Article
Times cited : (14)

References (32)
  • 1
  • 2
    • 28844484134 scopus 로고    scopus 로고
    • Renal-cell carcinoma
    • DOI 10.1056/NEJMra043172
    • Cohen H. T., McGovern F. J., Renal-cell carcinoma. The New England Journal of Medicine 2005 353 23 2477 2490 2-s2.0-28844484134 10.1056/NEJMra043172 (Pubitemid 41770167)
    • (2005) New England Journal of Medicine , vol.353 , Issue.23 , pp. 2477-2490
    • Cohen, H.T.1    McGovern, F.J.2
  • 4
    • 3042667856 scopus 로고    scopus 로고
    • Robust classification of renal cell carcinoma based on gene expression data and predicted cytogenetic profiles
    • DOI 10.1158/0008-5472.CAN-04-0534
    • Furge K. A., Lucas K. A., Takahashi M., Sugimura J., Kort E. J., Kanayama H.-O., Kagawa S., Hoekstra P., Curry J., Yang X. J., Teh B. T., Robust classification of renal cell carcinoma based on gene expression data and predicted cytogenetic profiles. Cancer Research 2004 64 12 4117 4121 2-s2.0-3042667856 10.1158/0008-5472.CAN-04-0534 (Pubitemid 38802413)
    • (2004) Cancer Research , vol.64 , Issue.12 , pp. 4117-4121
    • Furge, K.A.1    Lucas, K.A.2    Takahashi, M.3    Sugimura, J.4    Kort, E.J.5    Kanayama, H.-O.6    Kagawa, S.7    Hoekstra, P.8    Curry, J.9    Yang, X.J.10    Teh, B.T.11
  • 5
    • 34248168006 scopus 로고    scopus 로고
    • Detection of DNA copy number changes and oncogenic signaling abnormalities from gene expression data reveals MYC activation in high-grade papillary renal cell carcinoma
    • DOI 10.1158/0008-5472.CAN-06-4571
    • Furge K. A., Chen J., Koeman J., Swiatek P., Dykema K., Lucin K., Kahnoski R., Yang X. J., Bin T. T., Detection of DNA copy number changes and oncogenic signaling abnormalities from gene expression data reveals MYC activation in high-grade papillary renal cell carcinoma. Cancer Research 2007 67 7 3171 3176 2-s2.0-34248168006 10.1158/0008-5472.CAN-06-4571 (Pubitemid 46724854)
    • (2007) Cancer Research , vol.67 , Issue.7 , pp. 3171-3176
    • Furge, K.A.1    Chen, J.2    Koeman, J.3    Swiatek, P.4    Dykema, K.5    Lucin, K.6    Kahnoski, R.7    Yang, X.J.8    Bin, T.T.9
  • 6
    • 79960965895 scopus 로고    scopus 로고
    • Combined gene expression profiling and RNAi screening in clear cell renal cell carcinoma identify PLK1 and other therapeutic kinase targets
    • 10.1158/0008-5472.CAN-11-0076
    • Ding Y., Huang D., Zhang Z., Combined gene expression profiling and RNAi screening in clear cell renal cell carcinoma identify PLK1 and other therapeutic kinase targets. Cancer Research 2011 71 5225 5234 10.1158/0008-5472.CAN-11-0076
    • (2011) Cancer Research , vol.71 , pp. 5225-5234
    • Ding, Y.1    Huang, D.2    Zhang, Z.3
  • 7
    • 47649124124 scopus 로고    scopus 로고
    • A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
    • 10.1126/science.1160342
    • Sultan M., Schulz M. H., Richard H., A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 2008 321 956 960 10.1126/science.1160342
    • (2008) Science , vol.321 , pp. 956-960
    • Sultan, M.1    Schulz, M.H.2    Richard, H.3
  • 8
    • 77249117360 scopus 로고    scopus 로고
    • Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq
    • e106 2-s2.0-70449721097 10.1093/nar/gkp507
    • Chepelev I., Wei G., Tang Q., Zhao K., Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq. Nucleic Acids Research 2009 37 16 e106 2-s2.0-70449721097 10.1093/nar/gkp507
    • (2009) Nucleic Acids Research , vol.37 , Issue.16
    • Chepelev, I.1    Wei, G.2    Tang, Q.3    Zhao, K.4
  • 9
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi A., Williams B. A., McCue K., Schaeffer L., Wold B., Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 2008 5 7 621 628 2-s2.0-46249106990 10.1038/nmeth.1226 (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 11
    • 80052745094 scopus 로고    scopus 로고
    • Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
    • 2-s2.0-80052745094 10.1093/bioinformatics/btr427 btr427
    • Grant G. R., Farkas M. H., Pizarro A. D., Lahens N. F., Schug J., Brunk B. P., Stoeckert C. J., Hogenesch J. B., Pierce E. A., Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM). Bioinformatics 2011 27 18 2518 2528 2-s2.0-80052745094 10.1093/bioinformatics/ btr427 btr427
    • (2011) Bioinformatics , vol.27 , Issue.18 , pp. 2518-2528
    • Grant, G.R.1    Farkas, M.H.2    Pizarro, A.D.3    Lahens, N.F.4    Schug, J.5    Brunk, B.P.6    Stoeckert, C.J.7    Hogenesch, J.B.8    Pierce, E.A.9
  • 12
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • 2-s2.0-62349130698 10.1186/gb-2009-10-3-r25, ARTICLE R25
    • Langmead B., Trapnell C., Pop M., Salzberg S. L., Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 2009 10 3, article R25 2-s2.0-62349130698 10.1186/gb-2009-10-3-r25
    • (2009) Genome Biology , vol.10 , pp. 3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 13
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • 10.1093/bioinformatics/btp352
    • Li H., Handsaker B., Wysoker A., The sequence alignment/map format and SAMtools. Bioinformatics 2009 25 2078 2079 10.1093/bioinformatics/btp352
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 14
    • 79957842166 scopus 로고    scopus 로고
    • Computational methods for transcriptome annotation and quantification using RNA-seq
    • 2-s2.0-79957842166 10.1038/nmeth.1613
    • Garber M., Grabherr M. G., Guttman M., Trapnell C., Computational methods for transcriptome annotation and quantification using RNA-seq. Nature Methods 2011 8 6 469 477 2-s2.0-79957842166 10.1038/nmeth.1613
    • (2011) Nature Methods , vol.8 , Issue.6 , pp. 469-477
    • Garber, M.1    Grabherr, M.G.2    Guttman, M.3    Trapnell, C.4
  • 15
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • 2-s2.0-77958471357 10.1186/gb-2010-11-10-r106, ARTICLE R106
    • Anders S., Huber W., Differential expression analysis for sequence count data. Genome Biology 2010 11 10, article R106 2-s2.0-77958471357 10.1186/gb-2010-11-10-r106
    • (2010) Genome Biology , vol.11 , pp. 10
    • Anders, S.1    Huber, W.2
  • 16
    • 25444471841 scopus 로고    scopus 로고
    • Comparison of array-based comparative genomic hybridization with gene expression-based regional expression biases to identify genetic abnormalities in hepatocellular carcinoma
    • DOI 10.1186/1471-2164-6-67
    • Furge K. A., Dykema K. J., Ho C., Chen X., Comparison of array-based comparative genomic hybridization with gene expression-based regional expression biases to identify genetic abnormalities in hepatocellular carcinoma. BMC Genomics 2005 6, article 67 2-s2.0-25444471841 10.1186/1471-2164-6-67 (Pubitemid 41357668)
    • (2005) BMC Genomics , vol.6 , pp. 67
    • Furge, K.A.1    Dykema, K.J.2    Ho, C.3    Chen, X.4
  • 17
    • 78650118680 scopus 로고    scopus 로고
    • Birt-Hogg-Dube renal tumors are genetically distinct from other renal neoplasias and are associated with up-regulation of mitochondrial gene expression
    • 10.1186/1755-8794-3-59
    • Klomp J. A., Petillo D., Niemi N. M., Birt-Hogg-Dube renal tumors are genetically distinct from other renal neoplasias and are associated with up-regulation of mitochondrial gene expression. BMC Med Genomics 3, article 59 10.1186/1755-8794-3-59
    • BMC Med Genomics , vol.359
    • Klomp, J.A.1    Petillo, D.2    Niemi, N.M.3
  • 18
    • 20444419344 scopus 로고    scopus 로고
    • Sensitized RNAi screen of human kinases and phosphatases identifies new regulators of apoptosis and chemoresistance
    • DOI 10.1038/ncb1258
    • MacKeigan J. P., Murphy L. O., Blenis J., Sensitized RNAi screen of human kinases and phosphatases identifies new regulators of apoptosis and chemoresistance. Nature Cell Biology 2005 7 6 591 600 2-s2.0-20444419344 10.1038/ncb1258 (Pubitemid 40796982)
    • (2005) Nature Cell Biology , vol.7 , Issue.6 , pp. 591-600
    • MacKeigan, J.P.1    Murphy, L.O.2    Blenis, J.3
  • 19
    • 78649404935 scopus 로고    scopus 로고
    • Research resource: Transcriptional profiling reveals different pseudohypoxic signatures in SDHB and VHL-related pheochromocytomas
    • 10.1210/me.2010-0256
    • Lopez-Jimenez E., Gómez-López G., Leandro-García L. J., Research resource: transcriptional profiling reveals different pseudohypoxic signatures in SDHB and VHL-related pheochromocytomas. Molecular Endocrinology 2010 24 12 2382 2391 10.1210/me.2010-0256
    • (2010) Molecular Endocrinology , vol.24 , Issue.12 , pp. 2382-2391
    • Lopez-Jimenez, E.1    Gómez-López, G.2    Leandro-García, L.J.3
  • 22
    • 0022502868 scopus 로고
    • Monoclonal antibody G 250 recognizes a determinant present in renal-cell carcinoma and absent from normal kidney
    • Oosterwijk E., Ruiter D. J., Hoedemaeker J., Monoclonal antibody G250 recognizes a determinant present in renal-cell carcinoma and absent from normal kidney. International Journal of Cancer 1986 38 4 489 494 2-s2.0-0022502868 (Pubitemid 16006918)
    • (1986) International Journal of Cancer , vol.38 , Issue.4 , pp. 489-494
    • Oosterwijk, E.1    Ruiter, D.J.2    Hoedemaeker Ph., J.3
  • 23
    • 0029920054 scopus 로고    scopus 로고
    • Reversion of deregulated expression of vascular endothelial growth factor in human renal carcinoma cells by von Hippel-Lindau tumor suppressor protein
    • Siemeister G., Weindel K., Mohrs K., Barleon B., Martiny-Baron G., Marmé D., Reversion of deregulated expression of vascular endothelial growth factor in human renal carcinoma cells by von Hippel-Lindau tumor suppressor protein. Cancer Research 1996 56 10 2299 2301 2-s2.0-0029920054 (Pubitemid 26154077)
    • (1996) Cancer Research , vol.56 , Issue.10 , pp. 2299-2301
    • Siemeister, G.1    Weindel, K.2    Mohrs, K.3    Barleon, B.4    Martiny-Baron, G.5    Marme, D.6
  • 25
    • 0031831767 scopus 로고    scopus 로고
    • Renal potassium transport: Mechanisms and regulation
    • 2-s2.0-0031831767
    • Giebisch G., Renal potassium transport: Mechanisms and regulation. The American Journal of Physiology-Renal Physiology 1998 274 5 F817 F833 2-s2.0-0031831767
    • (1998) The American Journal of Physiology - Renal Physiology , vol.274 , Issue.5
    • Giebisch, G.1
  • 27
    • 36349010744 scopus 로고    scopus 로고
    • Transcriptional dysregulation mediated by RUNX1-RUNX1T1 in normal human progenitor cells and in acute myeloid leukaemia
    • DOI 10.1038/sj.leu.2404961, PII 2404961
    • Tonks A., Pearn L., Musson M., Gilkes A., Mills K. I., Burnett A. K., Darley R. L., Transcriptional dysregulation mediated by RUNX1-RUNX1T1 in normal human progenitor cells and in acute myeloid leukaemia. Leukemia 2007 21 12 2495 2505 2-s2.0-36349010744 10.1038/sj.leu.2404961 (Pubitemid 350148893)
    • (2007) Leukemia , vol.21 , Issue.12 , pp. 2495-2505
    • Tonks, A.1    Pearn, L.2    Musson, M.3    Gilkes, A.4    Mills, K.I.5    Burnett, A.K.6    Darley, R.L.7
  • 28
    • 2942516037 scopus 로고    scopus 로고
    • The 8;21 translocation in leukemogenesis
    • DOI 10.1038/sj.onc.1207727
    • Peterson L. F., Zhang D. E., The 8;21 translocation in leukemogenesis. Oncogene 2004 23 24 4255 4262 2-s2.0-2942516037 10.1038/sj.onc.1207727 (Pubitemid 38758592)
    • (2004) Oncogene , vol.23 , Issue.24 , pp. 4255-4262
    • Peterson, L.F.1    Zhang, D.-E.2
  • 29
    • 0028928749 scopus 로고
    • Chemotherapy for advanced renal-cell carcinoma: 1983-1993
    • 2-s2.0-0028928749
    • Yagoda A., Abi-Rached B., Petrylak D., Chemotherapy for advanced renal-cell carcinoma: 1983-1993. Seminars in Oncology 1995 22 1 42 60 2-s2.0-0028928749
    • (1995) Seminars in Oncology , vol.22 , Issue.1 , pp. 42-60
    • Yagoda, A.1    Abi-Rached, B.2    Petrylak, D.3
  • 30
    • 0023499815 scopus 로고
    • Intrinsic drug resistance in human kidney cancer is associated with expression of a human multidrug-resistance gene
    • Fojo A. T., Shen D.-W., Mickley L. A., Pastan I., Gottesman M. M., Intrinsic drug resistance in human kidney cancer is associated with expression of a human multidrug-resistance gene. Journal of Clinical Oncology 1987 5 12 1922 1927 2-s2.0-0023499815 (Pubitemid 18010151)
    • (1987) Journal of Clinical Oncology , vol.5 , Issue.12 , pp. 1922-1927
    • Fojo, A.T.1    Shen, D.-W.2    Mickley, L.A.3    Pastan, I.4    Gottesman, M.M.5
  • 31
    • 58249089607 scopus 로고    scopus 로고
    • Interferon-inducible guanylate binding protein (GBP)-2: A novel p53-regulated tumor marker in esophageal squamous cell carcinomas
    • 10.1002/ijc.23944
    • Guimaraes D. P., Oliveira I. M., de Moraes E., Interferon-inducible guanylate binding protein (GBP)-2: a novel p53-regulated tumor marker in esophageal squamous cell carcinomas. International Journal of Cancer 2009 124 2 272 279 10.1002/ijc.23944
    • (2009) International Journal of Cancer , vol.124 , Issue.2 , pp. 272-279
    • Guimaraes, D.P.1    Oliveira, I.M.2    De Moraes, E.3
  • 32
    • 84879890360 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of clear cell renal cell carcinoma
    • 10.1038/nature12222
    • Comprehensive molecular characterization of clear cell renal cell carcinoma. Nature 2013 499 7456 43 49 10.1038/nature12222
    • (2013) Nature , vol.499 , Issue.7456 , pp. 43-49


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