-
2
-
-
0033737840
-
Inferring qualitative relations in genetic networks and metabolic pathways
-
2-s2.0-0033737840
-
Akutsu T., Miyano S., Kuhara S., Inferring qualitative relations in genetic networks and metabolic pathways. Bioinformatics 2000 16 8 727 734 2-s2.0-0033737840
-
(2000)
Bioinformatics
, vol.16
, Issue.8
, pp. 727-734
-
-
Akutsu, T.1
Miyano, S.2
Kuhara, S.3
-
3
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
2-s2.0-0033707946 10.1089/106652700750050961
-
Friedman N., Linial M., Nachman I., Pe'er D., Using Bayesian networks to analyze expression data. Journal of Computational Biology 2000 7 3-4 601 620 2-s2.0-0033707946 10.1089/106652700750050961
-
(2000)
Journal of Computational Biology
, vol.7
, Issue.3-4
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'Er, D.4
-
4
-
-
3042698613
-
Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network
-
2-s2.0-3042698613
-
Imoto S., Kim S., Goto T., Miyano S., Aburatani S., Tashiro K., Kuhara S., Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network. Journal of Bioinformatics and Computational Biology 2003 1 2 231 252 2-s2.0-3042698613
-
(2003)
Journal of Bioinformatics and Computational Biology
, vol.1
, Issue.2
, pp. 231-252
-
-
Imoto, S.1
Kim, S.2
Goto, T.3
Miyano, S.4
Aburatani, S.5
Tashiro, K.6
Kuhara, S.7
-
5
-
-
0033736476
-
Genetic network inference: From co-expression clustering to reverse engineering
-
2-s2.0-0033736476
-
D'Haeseleer P., Liang S., Somogyi R., Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics 2000 16 8 707 726 2-s2.0-0033736476
-
(2000)
Bioinformatics
, vol.16
, Issue.8
, pp. 707-726
-
-
D'Haeseleer, P.1
Liang, S.2
Somogyi, R.3
-
6
-
-
33750016109
-
Inferring gene regulatory networks from multiple microarray datasets
-
DOI 10.1093/bioinformatics/btl396
-
Wang Y., Joshi T., Zhang X.-S., Xu D., Chen L., Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics 2006 22 19 2413 2420 2-s2.0-33750016109 10.1093/bioinformatics/btl396 (Pubitemid 44566971)
-
(2006)
Bioinformatics
, vol.22
, Issue.19
, pp. 2413-2420
-
-
Wang, Y.1
Joshi, T.2
Zhang, X.-S.3
Xu, D.4
Chen, L.5
-
7
-
-
36448970861
-
Inferring transcriptional regulatory networks from high-throughput data
-
DOI 10.1093/bioinformatics/btm465
-
Wang R.-S., Wang Y., Zhang X.-S., Chen L., Inferring transcriptional regulatory networks from high-throughput data. Bioinformatics 2007 23 22 3056 3064 2-s2.0-36448970861 10.1093/bioinformatics/btm465 (Pubitemid 350162871)
-
(2007)
Bioinformatics
, vol.23
, Issue.22
, pp. 3056-3064
-
-
Wang, R.-S.1
Wang, Y.2
Zhang, X.-S.3
Chen, L.4
-
8
-
-
0036191190
-
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling
-
Toh H., Horimoto K., Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. Bioinformatics 2002 18 2 287 297 2-s2.0-0036191190 (Pubitemid 34183106)
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 287-297
-
-
Toh, H.1
Horimoto, K.2
-
9
-
-
34548786620
-
Inferring gene dependency networks from genomic longitudinal data: A functional data approach
-
Opgen-Rhein R., Strimmer K., Inferring gene dependency networks from genomic longitudinal data: a functional data approach. REVSTAT 2006 4 1 53 65
-
(2006)
REVSTAT
, vol.4
, Issue.1
, pp. 53-65
-
-
Opgen-Rhein, R.1
Strimmer, K.2
-
10
-
-
34848903220
-
From correlation to causation networks: A simple approximate learning algorithm and its application to high-dimensional plant gene expression data
-
DOI 10.1186/1752-0509-1-37
-
Opgen-Rhein R., Strimmer K., From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data. BMC Systems Biology 2007 1, article 37 2-s2.0-34848903220 10.1186/1752-0509-1-37 (Pubitemid 47505533)
-
(2007)
BMC Systems Biology
, vol.1
, pp. 37
-
-
Opgen-Rhein, R.1
Strimmer, K.2
-
12
-
-
76049100050
-
Missing and spurious interactions and the reconstruction of complex networks
-
2-s2.0-76049100050 10.1073/pnas.0908366106
-
Guimerà R., Sales-Pardo M., Missing and spurious interactions and the reconstruction of complex networks. Proceedings of the National Academy of Sciences of the United States of America 2009 106 52 22073 22078 2-s2.0-76049100050 10.1073/pnas.0908366106
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, Issue.52
, pp. 22073-22078
-
-
Guimerà, R.1
Sales-Pardo, M.2
-
14
-
-
54049146919
-
Network evaluation from the consistency of the graph structure with the measured data
-
2-s2.0-54049146919 10.1186/1752-0509-2-84
-
Saito S., Aburatani S., Horimoto K., Network evaluation from the consistency of the graph structure with the measured data. BMC Systems Biology 2008 2, article 84 2-s2.0-54049146919 10.1186/1752-0509-2-84
-
(2008)
BMC Systems Biology
, vol.284
-
-
Saito, S.1
Aburatani, S.2
Horimoto, K.3
-
16
-
-
84870197769
-
Network completion using dynamic programming and least-squares fitting
-
10.1100/2012/957620 957620
-
Nakajima N., Tamura T., Yamanishi Y., Horimoto K., Akutsu T., Network completion using dynamic programming and least-squares fitting. The Scientific World Journal 2012 2012 8 10.1100/2012/957620 957620
-
(2012)
The Scientific World Journal
, vol.2012
, pp. 8
-
-
Nakajima, N.1
Tamura, T.2
Yamanishi, Y.3
Horimoto, K.4
Akutsu, T.5
-
17
-
-
84897531057
-
Exact and heuristic methods for network completion for time-varying genetic networks
-
684014 10.1155/2014/684014
-
Nakajima N., Akutsu T., Exact and heuristic methods for network completion for time-varying genetic networks. BioMed Research International 2014 2014 14 684014 10.1155/2014/684014
-
(2014)
BioMed Research International
, vol.2014
, pp. 14
-
-
Nakajima, N.1
Akutsu, T.2
-
18
-
-
33750353888
-
Reverse engineering cellular networks
-
2-s2.0-33750353888 10.1038/nprot.2006.106
-
Margolin A. A., Wang K., Lim W. K., Kustagi M., Nemenman I., Califano A., Reverse engineering cellular networks. Nature Protocols 2006 1 2 662 671 2-s2.0-33750353888 10.1038/nprot.2006.106
-
(2006)
Nature Protocols
, vol.1
, Issue.2
, pp. 662-671
-
-
Margolin, A.A.1
Wang, K.2
Lim, W.K.3
Kustagi, M.4
Nemenman, I.5
Califano, A.6
-
19
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
DOI 10.1186/1471-2105-7-S1-S7
-
Margolin A. A., Nemenman I., Basso K., Wiggins C., Stolovitzky G., Favera R. D., Califano A., ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics 2006 7 1, article S7 2-s2.0-33947305781 10.1186/1471-2105-7-S1-S7 (Pubitemid 46437495)
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL.1
-
-
Margolin, A.A.1
Nemenman, I.2
Basso, K.3
Wiggins, C.4
Stolovitzky, G.5
Favera, R.D.6
Califano, A.7
-
20
-
-
79961200389
-
GeneNetWeaver: In silico benchmark generation and performance profiling of network inference methods
-
2-s2.0-79961200389 10.1093/bioinformatics/btr373
-
Schaffter T., Marbach D., Floreano D., GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods. Bioinformatics 2011 27 16 2263 2270 2-s2.0-79961200389 10.1093/bioinformatics/ btr373
-
(2011)
Bioinformatics
, vol.27
, Issue.16
, pp. 2263-2270
-
-
Schaffter, T.1
Marbach, D.2
Floreano, D.3
-
21
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
2-s2.0-75549090213 10.1093/nar/gkp896
-
Kanehisa M., Goto S., Furumichi M., Tanabe M., Hirakawa M., KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Research 2009 38 1 D355 D360 2-s2.0-75549090213 10.1093/nar/gkp896
-
(2009)
Nucleic Acids Research
, vol.38
, Issue.1
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
22
-
-
0035063183
-
The Rb/E2F pathway and cancer
-
Nevins J. R., The Rb/E2F pathway and cancer. Human Molecular Genetics 2001 10 7 699 703 2-s2.0-0035063183 (Pubitemid 32331578)
-
(2001)
Human Molecular Genetics
, vol.10
, Issue.7
, pp. 699-703
-
-
Nevins, J.R.1
-
23
-
-
18544365698
-
Gene-expression profiles predict survival of patients with lung adenocarcinoma
-
2-s2.0-18544365698 10.1038/nm733
-
Beer D. G., Kardia S. L. R., Huang C.-C., Giordano T. J., Levin A. M., Misek D. E., Lin L., Chen G., Gharib T. G., Thomas D. G., Lizyness M. L., Kuick R., Hayasaka S., Taylor J. M. G., Iannettoni M. D., Orringer M. B., Hanash S., Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nature Medicine 2002 8 8 816 824 2-s2.0-18544365698 10.1038/nm733
-
(2002)
Nature Medicine
, vol.8
, Issue.8
, pp. 816-824
-
-
Beer, D.G.1
Kardia, S.L.R.2
Huang, C.-C.3
Giordano, T.J.4
Levin, A.M.5
Misek, D.E.6
Lin, L.7
Chen, G.8
Gharib, T.G.9
Thomas, D.G.10
Lizyness, M.L.11
Kuick, R.12
Hayasaka, S.13
Taylor, J.M.G.14
Iannettoni, M.D.15
Orringer, M.B.16
Hanash, S.17
-
24
-
-
70350682038
-
Statistical methods for gene set co-expression analysis
-
2-s2.0-70350682038 10.1093/bioinformatics/btp502
-
Choi Y., Kendziorski C., Statistical methods for gene set co-expression analysis. Bioinformatics 2009 25 21 2780 2786 2-s2.0-70350682038 10.1093/bioinformatics/btp502
-
(2009)
Bioinformatics
, vol.25
, Issue.21
, pp. 2780-2786
-
-
Choi, Y.1
Kendziorski, C.2
-
25
-
-
34247149015
-
The regulation of cyclin D1 degradation: Roles in cancer development and the potential for therapeutic invention
-
DOI 10.1186/1476-4598-6-24
-
Alao J. P., The regulation of cyclin D1 degradation: roles in cancer development and the potential for therapeutic invention. Molecular Cancer 2007 6, article 24 2-s2.0-34247149015 10.1186/1476-4598-6-24 (Pubitemid 46585441)
-
(2007)
Molecular Cancer
, vol.6
, pp. 24
-
-
Alao, J.P.1
|