-
1
-
-
84988044292
-
Bioinformatics-from genes to pathways
-
Bonetta L Bioinformatics-from genes to pathways Nature Methods 2004, 1:169-176
-
(2004)
Nature Methods
, vol.1
, pp. 169-176
-
-
Bonetta, L.1
-
2
-
-
33645831306
-
Automatic pathway building in biological association networks
-
1435941 16563163
-
Yuryev A Mulyukov Z Kotelnikova E Maslov S Egorov S Nikitin A Daraselia N Mazo I Automatic pathway building in biological association networks BMC Bioinformatics 2006, 7:171 1435941 16563163
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 171
-
-
Yuryev, A.1
Mulyukov, Z.2
Kotelnikova, E.3
Maslov, S.4
Egorov, S.5
Nikitin, A.6
Daraselia, N.7
Mazo, I.8
-
3
-
-
38549117301
-
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
2238876 17965431
-
Caspi R Foerster H Fulcher CA Kaipa P Krummenacker M Latendresse M Paley S Rhee SY Shearer AG Tissier C Walk TC Zhang P Karp PD The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases Nucl Acids Res 2008, 36:D623-D631 2238876 17965431
-
(2008)
Nucl Acids Res
, vol.36
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Kaipa, P.4
Krummenacker, M.5
Latendresse, M.6
Paley, S.7
Rhee, S.Y.8
Shearer, A.G.9
Tissier, C.10
Walk, T.C.11
Zhang, P.12
Karp, P.D.13
-
4
-
-
27144509163
-
Inflammation and Host Response to Injury Large Scale Collaborative Research Program. A Network-Based Analysis of Systemic Inflammation in Humans
-
16136080
-
Calvano SE Xiao W Richards DR Felciano RM Baker HV Cho RJ Chen RO Brownstein BH Cobb JP Tschoeke SK Miller-Graziano C Moldawer LL Mindrinos MN Davis RW Tompkins RG Lowry SF Inflammation and Host Response to Injury Large Scale Collaborative Research Program. A Network-Based Analysis of Systemic Inflammation in Humans Nature 2005, 437:1032-1037 16136080
-
(2005)
Nature
, vol.437
, pp. 1032-1037
-
-
Calvano, S.E.1
Xiao, W.2
Richards, D.R.3
Felciano, R.M.4
Baker, H.V.5
Cho, R.J.6
Chen, R.O.7
Brownstein, B.H.8
Cobb, J.P.9
Tschoeke, S.K.10
Miller-Graziano, C.11
Moldawer, L.L.12
Mindrinos, M.N.13
Davis, R.W.14
Tompkins, R.G.15
Lowry, S.F.16
-
5
-
-
33744785962
-
Variants in the GH-IGF axis confer susceptibility to lung cancer
-
GELCAPS Consortium 1473180 16741161
-
Rudd MF Webb EL Matakidou A Sellick GS Williams RD Bridle H Eisen T Houlston RS GELCAPS Consortium Variants in the GH-IGF axis confer susceptibility to lung cancer Genome Res 2006, 16:693-701 1473180 16741161
-
(2006)
Genome Res
, vol.16
, pp. 693-701
-
-
Rudd, M.F.1
Webb, E.L.2
Matakidou, A.3
Sellick, G.S.4
Williams, R.D.5
Bridle, H.6
Eisen, T.7
Houlston, R.S.8
-
6
-
-
36248962105
-
The Genomic Landscapes of Human Breast and Colorectal Cancers
-
17932254
-
Wood LD Parsons DW Jones S Lin J Sjoblom T Leary RJ Shen D Boca SM Barber T Ptak J Silliman N Szabo S Dezso Z Ustyanksky V Nikolskaya T Nikolsky Y Karchin R Wilson PA Kaminker JS Zhang Z Croshaw R Willis J Dawson D Shipitsin M Willson JKV Sukumar S Polyak K Park BH Pethiyagoda CL Krishna Pant PV Ballinger DG Sparks AB Hartigan J Smith DR Suh E Papadopoulos N Buckhaults P Markowitz SD Parmigiani G Kinzler KW Velculescu VE Vogelstein B The Genomic Landscapes of Human Breast and Colorectal Cancers Science 2007, 318:1108-1113 17932254
-
(2007)
Science
, vol.318
, pp. 1108-1113
-
-
Wood, L.D.1
Parsons, D.W.2
Jones, S.3
Lin, J.4
Sjoblom, T.5
Leary, R.J.6
Shen, D.7
Boca, S.M.8
Barber, T.9
Ptak, J.10
Silliman, N.11
Szabo, S.12
Dezso, Z.13
Ustyanksky, V.14
Nikolskaya, T.15
Nikolsky, Y.16
Karchin, R.17
Wilson, P.A.18
Kaminker, J.S.19
Zhang, Z.20
Croshaw, R.21
Willis, J.22
Dawson, D.23
Shipitsin, M.24
Willson, J.K.V.25
Sukumar, S.26
Polyak, K.27
Park, B.H.28
Pethiyagoda, C.L.29
Krishna Pant, P.V.30
Ballinger, D.G.31
Sparks, A.B.32
Hartigan, J.33
Smith, D.R.34
Suh, E.35
Papadopoulos, N.36
Buckhaults, P.37
Markowitz, S.D.38
Parmigiani, G.39
Kinzler, K.W.40
Velculescu, V.E.41
Vogelstein, B.42
more..
-
11
-
-
0036191190
-
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling
-
11847076
-
Toh H Horimoto K Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling Bioinformatics 2002, 18:287-297 11847076
-
(2002)
Bioinformatics
, vol.18
, pp. 287-297
-
-
Toh, H.1
Horimoto, K.2
-
12
-
-
0001445915
-
The method of path coefficients
-
Wright S Adhya S The method of path coefficients Ann Math Statist 1934, 5:161-215
-
(1934)
Ann Math Statist
, vol.5
, pp. 161-215
-
-
Wright, S.1
Adhya, S.2
-
13
-
-
0000243476
-
A general method for analysis of covariance structures
-
Joreskog KG A general method for analysis of covariance structures J Biometrika 1970, 57:239-251
-
(1970)
J Biometrika
, vol.57
, pp. 239-251
-
-
Joreskog, K.G.1
-
14
-
-
0002044963
-
A new inferential test for path models based on directed acyclic graphs
-
Shipley B A new inferential test for path models based on directed acyclic graphs Structural Equation Modeling 2000, 7:206-218
-
(2000)
Structural Equation Modeling
, vol.7
, pp. 206-218
-
-
Shipley, B.1
-
17
-
-
33845575535
-
Inflammatory aetiology of human myometrial activation tested using directed graphs
-
1185645 16110333
-
Bisits AM Smith R Mesiano S Yeo G Kwek K MacIntyre D Chan EC Inflammatory aetiology of human myometrial activation tested using directed graphs PLoS Comput Biol 2005, 1:132-136 1185645 16110333
-
(2005)
PLoS Comput Biol
, vol.1
, pp. 132-136
-
-
Bisits, A.M.1
Smith, R.2
Mesiano, S.3
Yeo, G.4
Kwek, K.5
MacIntyre, D.6
Chan, E.C.7
-
18
-
-
0242574985
-
Reconciling gene expression data with known genome-scale regulatory network structures
-
403761 14559784
-
Herrgard MJ Covert MW Palsson BO Reconciling gene expression data with known genome-scale regulatory network structures Genome Research 2003, 13:2423-2434 403761 14559784
-
(2003)
Genome Research
, vol.13
, pp. 2423-2434
-
-
Herrgard, M.J.1
Covert, M.W.2
Palsson, B.O.3
-
19
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
11967538
-
Shen-Orr SS Milo R Mangan S Alon U Network motifs in the transcriptional regulation network of Escherichia coli Nat Genet 2002, 31:64-68 11967538
-
(2002)
Nat Genet
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
22
-
-
0000704345
-
Maximum likelihood estimation in a class of non-regular cases
-
Smith RL Maximum likelihood estimation in a class of non-regular cases Biometrika 1985, 72:67-90
-
(1985)
Biometrika
, vol.72
, pp. 67-90
-
-
Smith, R.L.1
-
23
-
-
0031258882
-
The asymptotic number of labeled graphs with n vertices, q edges, and no isolated vertices
-
Bender EA Canfield ER McKay BD The asymptotic number of labeled graphs with n vertices, q edges, and no isolated vertices J Combinatorial Theory, Series A 1997, 80:124-150
-
(1997)
J Combinatorial Theory, Series A
, vol.80
, pp. 124-150
-
-
Bender, E.A.1
Canfield, E.R.2
McKay, B.D.3
-
24
-
-
0036678794
-
Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics
-
124972 12145321
-
Ronen M Rosenberg R Shraiman BI Alon U Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics Proc Natl Acad Sci 2002, 99:10555-10560 124972 12145321
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 10555-10560
-
-
Ronen, M.1
Rosenberg, R.2
Shraiman, B.I.3
Alon, U.4
-
25
-
-
2342648924
-
Integrating high-throughput and computational data elucidates bacterial networks
-
15129285
-
Covert MW Knight EM Reed JL Herrgard MJ Palsson BO Integrating high-throughput and computational data elucidates bacterial networks Nature 2004, 429:92-96 15129285
-
(2004)
Nature
, vol.429
, pp. 92-96
-
-
Covert, M.W.1
Knight, E.M.2
Reed, J.L.3
Herrgard, M.J.4
Palsson, B.O.5
-
26
-
-
0039577881
-
DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli
-
349496 6771759
-
Kenyon CJ Walker GC DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli Proc Natl Acad Sci 1980, 77:2819-2823 349496 6771759
-
(1980)
Proc Natl Acad Sci
, vol.77
, pp. 2819-2823
-
-
Kenyon, C.J.1
Walker, G.C.2
-
27
-
-
0020316054
-
The SOS regulatory system of Escherichia coli
-
7049397
-
Little JW Mounta DW The SOS regulatory system of Escherichia coli Cell 1982, 29:11-22 7049397
-
(1982)
Cell
, vol.29
, pp. 11-22
-
-
Little, J.W.1
Mounta, D.W.2
-
28
-
-
0020338594
-
Expression of malT, the regulator gene of the maltose region in Escherichia coli, is limited both at transcription and translation
-
553051 6325162
-
Chapon C Expression of malT, the regulator gene of the maltose region in Escherichia coli, is limited both at transcription and translation EMBO J 1982, 1:369-374 553051 6325162
-
(1982)
EMBO J
, vol.1
, pp. 369-374
-
-
Chapon, C.1
-
29
-
-
0019519578
-
Mechanism of araC autoregulation and the domains of two overlapping promoters, Pc and PBAD, in the L-arabinose regulatory region of Escherichia coli
-
319880 6262769
-
Lee NL Gielow WO Wallace RG Mechanism of araC autoregulation and the domains of two overlapping promoters, Pc and PBAD, in the L-arabinose regulatory region of Escherichia coli Proc Natl Acad Sci 1981, 78:752-756 319880 6262769
-
(1981)
Proc Natl Acad Sci
, vol.78
, pp. 752-756
-
-
Lee, N.L.1
Gielow, W.O.2
Wallace, R.G.3
-
30
-
-
0019972596
-
Regulation and transcription direction of exuR, a self-regulated repressor in Escherichia coli K-12
-
6808145
-
Hugovieux-Cotte-Pattat N Robert-Baudouy J Regulation and transcription direction of exuR, a self-regulated repressor in Escherichia coli K-12 J Mol Biol 1982, 156:221-228 6808145
-
(1982)
J Mol Biol
, vol.156
, pp. 221-228
-
-
Hugovieux-Cotte-Pattat, N.1
Robert-Baudouy, J.2
-
31
-
-
0024279303
-
Positive and negative regulators for glucitol (gut) operon expression in Escherichia coli
-
3062173
-
Yamada M Saier MH Positive and negative regulators for glucitol (gut) operon expression in Escherichia coli J Mol Biol 1988, 203:569-583 3062173
-
(1988)
J Mol Biol
, vol.203
, pp. 569-583
-
-
Yamada, M.1
Saier, M.H.2
-
32
-
-
0027471001
-
Control of transcription of gal repressor and isorepressor genes in Escherichia coli
-
196120 8416900
-
Weickert MJ Adhya S Control of transcription of gal repressor and isorepressor genes in Escherichia coli J Bacteriol 1993, 175:251-258 196120 8416900
-
(1993)
J Bacteriol
, vol.175
, pp. 251-258
-
-
Weickert, M.J.1
Adhya, S.2
-
33
-
-
0019148881
-
Regulation of Echerichia coli K-12 hexuronate system genes: Exu regulon
-
294455 6997263
-
Portalier RC Robert-Baudouy J Stoeber F Regulation of Echerichia coli K-12 hexuronate system genes: Exu regulon J Bacteriol 1980, 143:1095-1107 294455 6997263
-
(1980)
J Bacteriol
, vol.143
, pp. 1095-1107
-
-
Portalier, R.C.1
Robert-Baudouy, J.2
Stoeber, F.3
-
34
-
-
0021925495
-
Influence of Transport Energization on the Growth Yield of Escherichia coli
-
219265 3928598
-
Muir M Williams L Ferenci T Influence of Transport Energization on the Growth Yield of Escherichia coli J Bacteriol 1985, 163:1237-1242 219265 3928598
-
(1985)
J Bacteriol
, vol.163
, pp. 1237-1242
-
-
Muir, M.1
Williams, L.2
Ferenci, T.3
-
35
-
-
0242386460
-
Identifying global regulators in transcriptional regulatory networks in bacteria
-
14572541
-
Martinez-Antonio A Collado-Vides J Identifying global regulators in transcriptional regulatory networks in bacteria Curr Opin Microbiol 2003, 6:482-489 14572541
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 482-489
-
-
Martinez-Antonio, A.1
Collado-Vides, J.2
-
36
-
-
0001104525
-
Responses to molecular oxygen. In Escherichia coli and Salmonella typhimurium
-
Washington DC 2
-
Lynch AS Lin EC Responses to molecular oxygen. In Escherichia coli and Salmonella typhimurium Cellular and Molecular Biology Washington DC 2 1996:1526-1539
-
(1996)
Cellular and Molecular Biology
, pp. 1526-1539
-
-
Lynch, A.S.1
Lin, E.C.2
-
37
-
-
0030756106
-
The oxygen-responsive transcriptional regulator FNR of Escherichia coli: The search for signals and reactions
-
9282732
-
Unden G Schirawski J The oxygen-responsive transcriptional regulator FNR of Escherichia coli: The search for signals and reactions Mol Microbiol 1997, 4:205-210 9282732
-
(1997)
Mol Microbiol
, vol.4
, pp. 205-210
-
-
Unden, G.1
Schirawski, J.2
-
40
-
-
0042243811
-
An Algorithmic Criterion for the Solvability of a System of Algebraic Equations
-
London, Mathematical Society Lecture Notes Series Buchberger B, Winkler F
-
Buchberger B An Algorithmic Criterion for the Solvability of a System of Algebraic Equations Peer review in Gröbner Bases and Applications London, Mathematical Society Lecture Notes Series Buchberger B, Winkler F 1998, 251:535-545
-
(1998)
Peer Review in Gröbner Bases and Applications
, vol.251
, pp. 535-545
-
-
Buchberger, B.1
-
44
-
-
38049007503
-
Multidimensional annotation of the Escherichia coli K-12 genome
-
2190727 17940092
-
Karp PD Keseler IM Shearer A Latendresse M Krummenacker M Paley SM Paulsen I Collado-Vides J Gama-Castro S Peralta-Gil M Santos-Zavaleta A Penaloza-Spinola MI Bonavides-Martinez C Ingraham J Multidimensional annotation of the Escherichia coli K-12 genome Nucl Acids Res 2007, 35:7577-7590 2190727 17940092
-
(2007)
Nucl Acids Res
, vol.35
, pp. 7577-7590
-
-
Karp, P.D.1
Keseler, I.M.2
Shearer, A.3
Latendresse, M.4
Krummenacker, M.5
Paley, S.M.6
Paulsen, I.7
Collado-Vides, J.8
Gama-Castro, S.9
Peralta-Gil, M.10
Santos-Zavaleta, A.11
Penaloza-Spinola, M.I.12
Bonavides-Martinez, C.13
Ingraham, J.14
-
45
-
-
33846064113
-
NCBI GEO: Mining tens of millions of expression profiles - Database and tools update
-
1669752 17099226
-
Barrett T Troup DB Wilhite SE Ledoux P Rudnev D Evangelista C Kim IF Soboleva A Tomashevsky M Edgar R NCBI GEO: Mining tens of millions of expression profiles - database and tools update Nucleic Acid Res 2007, 35:D760-D765 1669752 17099226
-
(2007)
Nucleic Acid Res
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
|