-
1
-
-
84874389575
-
Whole genome identity-by-descent determination
-
Sabaa H, Cai Z, Wang Y, Goebel R, Moore S, Lin G. Whole genome identity-by-descent determination. J Bioinform Comput Biol 2013, 11(02):1350002.
-
(2013)
J Bioinform Comput Biol
, vol.11
, Issue.2
, pp. 1350002
-
-
Sabaa, H.1
Cai, Z.2
Wang, Y.3
Goebel, R.4
Moore, S.5
Lin, G.6
-
2
-
-
84897689623
-
De novo assembly methods for next generation sequencing data
-
He Y, Zhang Z, Peng X, Wu F, Wang J. De novo assembly methods for next generation sequencing data. Tsinghua Sci Technol 2013, 18(5):500-514.
-
(2013)
Tsinghua Sci Technol
, vol.18
, Issue.5
, pp. 500-514
-
-
He, Y.1
Zhang, Z.2
Peng, X.3
Wu, F.4
Wang, J.5
-
3
-
-
65949099120
-
Genetic risk prediction: are we there yet?
-
10.1056/NEJMp0810107, 19369656
-
Peter K, Hunter DJ. Genetic risk prediction: are we there yet?. N Engl J Med 2009, 360(17):1701-1703. 10.1056/NEJMp0810107, 19369656.
-
(2009)
N Engl J Med
, vol.360
, Issue.17
, pp. 1701-1703
-
-
Peter, K.1
Hunter, D.J.2
-
4
-
-
78650540144
-
A variable selection method for genome-wide association studies
-
10.1093/bioinformatics/btq600, 3025714,3025714, 21036813
-
He Q, Lin DY. A variable selection method for genome-wide association studies. Bioinformatics 2011, 27:1-8. 10.1093/bioinformatics/btq600, 3025714,3025714, 21036813.
-
(2011)
Bioinformatics
, vol.27
, pp. 1-8
-
-
He, Q.1
Lin, D.Y.2
-
5
-
-
16844366786
-
Genome-wide strategies for detecting multiple loci that influence complex diseases
-
10.1038/ng1537, 15793588
-
Marchini J, Donnelly P, Cardon LR. Genome-wide strategies for detecting multiple loci that influence complex diseases. Nat Genet 2005, 37:413-417. 10.1038/ng1537, 15793588.
-
(2005)
Nat Genet
, vol.37
, pp. 413-417
-
-
Marchini, J.1
Donnelly, P.2
Cardon, L.R.3
-
7
-
-
0036797562
-
Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans
-
10.1093/hmg/11.20.2463, 12351582
-
Cordell HJ. Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans. Hum Mol Genet 2002, 11(20):2463-2468. 10.1093/hmg/11.20.2463, 12351582.
-
(2002)
Hum Mol Genet
, vol.11
, Issue.20
, pp. 2463-2468
-
-
Cordell, H.J.1
-
8
-
-
67650930134
-
Most parsimonious haplotype allele sharing determination
-
10.1186/1471-2105-10-115, 2691739, 19379528
-
Cai Z, Sabaa H, Wang Y, Goebel R, Wang Z, Xu J, Stothard P, Lin G. Most parsimonious haplotype allele sharing determination. BMC Bioinformatics 2009, 10:115. 10.1186/1471-2105-10-115, 2691739, 19379528.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 115
-
-
Cai, Z.1
Sabaa, H.2
Wang, Y.3
Goebel, R.4
Wang, Z.5
Xu, J.6
Stothard, P.7
Lin, G.8
-
9
-
-
84864520549
-
Fast accurate missing SNP genotype local imputation
-
10.1186/1756-0500-5-404, 3499149, 22863359
-
Wang Y, Cai Z, Stothard P, Moore S, Goebel R, Wang L, Lin G. Fast accurate missing SNP genotype local imputation. BMC Res Notes 2012, 5:404. 10.1186/1756-0500-5-404, 3499149, 22863359.
-
(2012)
BMC Res Notes
, vol.5
, pp. 404
-
-
Wang, Y.1
Cai, Z.2
Stothard, P.3
Moore, S.4
Goebel, R.5
Wang, L.6
Lin, G.7
-
10
-
-
66749144808
-
Efficient haplotype inference algorithms in one whole genome scan for pedigree data with non-genotyped founders
-
Cheng Y, Sabaa H, Cai Z, Goebel R, Lin G. Efficient haplotype inference algorithms in one whole genome scan for pedigree data with non-genotyped founders. Acta Math Appl Sinica, English Series 2009, 25(3):477-488.
-
(2009)
Acta Math Appl Sinica, English Series
, vol.25
, Issue.3
, pp. 477-488
-
-
Cheng, Y.1
Sabaa, H.2
Cai, Z.3
Goebel, R.4
Lin, G.5
-
11
-
-
84897741761
-
Community detection in disease-gene network based on principal component analysis
-
Liu W, Chen L. Community detection in disease-gene network based on principal component analysis. Tsinghua Sci Technol 2013, 18(5):454-461.
-
(2013)
Tsinghua Sci Technol
, vol.18
, Issue.5
, pp. 454-461
-
-
Liu, W.1
Chen, L.2
-
12
-
-
0034973569
-
Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
-
10.1086/321276, 1226028, 11404819
-
Ritchie MD, Hahn LW, Roodi N, Bailey LR, Dupont WD, Parl FF, Moore JH. Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am J Hum Genet 2001, 69:138-147. 10.1086/321276, 1226028, 11404819.
-
(2001)
Am J Hum Genet
, vol.69
, pp. 138-147
-
-
Ritchie, M.D.1
Hahn, L.W.2
Roodi, N.3
Bailey, L.R.4
Dupont, W.D.5
Parl, F.F.6
Moore, J.H.7
-
13
-
-
0035084663
-
A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation
-
10.1101/gr.172901, 311041, 11230170
-
Nelson M, Kardia S, Ferrell R, Sing C. A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation. Genome Res 2001, 11(3):458-470. 10.1101/gr.172901, 311041, 11230170.
-
(2001)
Genome Res
, vol.11
, Issue.3
, pp. 458-470
-
-
Nelson, M.1
Kardia, S.2
Ferrell, R.3
Sing, C.4
-
14
-
-
67349166946
-
Detecting gene-gene interactions that underlie human diseases
-
10.1038/nrg2579, 2872761, 19434077
-
Cordell HJ. Detecting gene-gene interactions that underlie human diseases. Nat Rev Genet 2009, 10:392-404. 10.1038/nrg2579, 2872761, 19434077.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 392-404
-
-
Cordell, H.J.1
-
15
-
-
80054892937
-
An empirical comparison of several recent epistatic interaction detection methods
-
10.1093/bioinformatics/btr512, 21903628
-
Wang Y, Liu G, Feng M, Wong L. An empirical comparison of several recent epistatic interaction detection methods. Bioinformatics 2011, 27(21):2936-2943. 10.1093/bioinformatics/btr512, 21903628.
-
(2011)
Bioinformatics
, vol.27
, Issue.21
, pp. 2936-2943
-
-
Wang, Y.1
Liu, G.2
Feng, M.3
Wong, L.4
-
16
-
-
84859841150
-
High-order SNP combinations associated with complex diseases: efficient discovery, statistical power and functional interactions
-
10.1371/journal.pone.0033531, 3334940, 22536319
-
Fang G, Haznadar M, Wang W, Yu H, Steinbach M, Church TR, Oetting WS, Van Ness B, Kumar V. High-order SNP combinations associated with complex diseases: efficient discovery, statistical power and functional interactions. PLoS ONE 2012, 7(4):e33531. 10.1371/journal.pone.0033531, 3334940, 22536319.
-
(2012)
PLoS ONE
, vol.7
, Issue.4
-
-
Fang, G.1
Haznadar, M.2
Wang, W.3
Yu, H.4
Steinbach, M.5
Church, T.R.6
Oetting, W.S.7
Van Ness, B.8
Kumar, V.9
-
17
-
-
78650151311
-
Model-based multifactor dimensionality reduction for detecting epistasis in case-control data in the presence of noise
-
10.1111/j.1469-1809.2010.00604.x, 3059142, 21158747
-
Cattaert T, Calle ML, Dudek SM, Mahachie John JM, Van Lishout F, Urrea V, Ritchie MD, Van Steen K. Model-based multifactor dimensionality reduction for detecting epistasis in case-control data in the presence of noise. Ann Hum Genet 2011, 75:78-89. 10.1111/j.1469-1809.2010.00604.x, 3059142, 21158747.
-
(2011)
Ann Hum Genet
, vol.75
, pp. 78-89
-
-
Cattaert, T.1
Calle, M.L.2
Dudek, S.M.3
Mahachie John, J.M.4
Van Lishout, F.5
Urrea, V.6
Ritchie, M.D.7
Van Steen, K.8
-
18
-
-
77956395423
-
BOOST: a fast approach to detecting gene-gene interactions in genome-wide case-control studies
-
10.1016/j.ajhg.2010.07.021, 2933337, 20817139
-
Wan X, Yang C, Yang Q, Xue H, Fan X, Tang NL, Yu W. BOOST: a fast approach to detecting gene-gene interactions in genome-wide case-control studies. Am J Hum Genet 2010, 87(3):325-340. 10.1016/j.ajhg.2010.07.021, 2933337, 20817139.
-
(2010)
Am J Hum Genet
, vol.87
, Issue.3
, pp. 325-340
-
-
Wan, X.1
Yang, C.2
Yang, Q.3
Xue, H.4
Fan, X.5
Tang, N.L.6
Yu, W.7
-
19
-
-
77957764867
-
Detecting two-locus associations allowing for interactions in genome-wide association studies
-
10.1093/bioinformatics/btq486, 20736343
-
Wan X, Yang C, Yang Q, Xue H, Tang NLS, Yu W. Detecting two-locus associations allowing for interactions in genome-wide association studies. Bioinformatics 2010, 26(20):2517-2525. 10.1093/bioinformatics/btq486, 20736343.
-
(2010)
Bioinformatics
, vol.26
, Issue.20
, pp. 2517-2525
-
-
Wan, X.1
Yang, C.2
Yang, Q.3
Xue, H.4
Tang, N.L.S.5
Yu, W.6
-
20
-
-
84855175318
-
Detecting genome-wide epistases based on the clustering of relatively frequent items
-
10.1093/bioinformatics/btr603, 3244765, 22053078
-
Xie M, Li J, Jiang T. Detecting genome-wide epistases based on the clustering of relatively frequent items. Bioinformatics 2012, 28:5-12. 10.1093/bioinformatics/btr603, 3244765, 22053078.
-
(2012)
Bioinformatics
, vol.28
, pp. 5-12
-
-
Xie, M.1
Li, J.2
Jiang, T.3
-
21
-
-
79954524892
-
GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies
-
10.1093/bioinformatics/btr114, 3105448, 21372087
-
Yung LS, Yang C, Wan X, Yu W. GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies. Bioinformatics 2011, 27(9):1309-1310. 10.1093/bioinformatics/btr114, 3105448, 21372087.
-
(2011)
Bioinformatics
, vol.27
, Issue.9
, pp. 1309-1310
-
-
Yung, L.S.1
Yang, C.2
Wan, X.3
Yu, W.4
-
22
-
-
79953753220
-
Genome-wide interaction-based association analysis identified multiple new susceptibility loci for common diseases
-
10.1371/journal.pgen.1001338, 3060075, 21437271
-
Liu Y, Xu H, Chen S, Chen X, Zhang Z, Zhu Z, Qin X, Hu L, Zhu J, Zhao GP, Kong X. Genome-wide interaction-based association analysis identified multiple new susceptibility loci for common diseases. PLoS Genet 2011, 7(3):e1001338. 10.1371/journal.pgen.1001338, 3060075, 21437271.
-
(2011)
PLoS Genet
, vol.7
, Issue.3
-
-
Liu, Y.1
Xu, H.2
Chen, S.3
Chen, X.4
Zhang, Z.5
Zhu, Z.6
Qin, X.7
Hu, L.8
Zhu, J.9
Zhao, G.P.10
Kong, X.11
-
23
-
-
43749109599
-
A novel strategy for detecting multiple loci in Genome-Wide Association Studies of complex diseases
-
10.1504/IJBRA.2008.018342, 3326663, 18490260
-
Li J. A novel strategy for detecting multiple loci in Genome-Wide Association Studies of complex diseases. Int J Bioinform Res Appl 2008, 4(2):150-163. 10.1504/IJBRA.2008.018342, 3326663, 18490260.
-
(2008)
Int J Bioinform Res Appl
, vol.4
, Issue.2
, pp. 150-163
-
-
Li, J.1
-
24
-
-
75249087515
-
Predictive rule inference for epistatic interaction detection in genome-wide association studies
-
10.1093/bioinformatics/btp622, 19880365
-
Wan X, Yang C, Yang Q, Xue H, Tang NL, Yu W. Predictive rule inference for epistatic interaction detection in genome-wide association studies. Bioinformatics 2010, 26:30-37. 10.1093/bioinformatics/btp622, 19880365.
-
(2010)
Bioinformatics
, vol.26
, pp. 30-37
-
-
Wan, X.1
Yang, C.2
Yang, Q.3
Xue, H.4
Tang, N.L.5
Yu, W.6
-
25
-
-
34548352849
-
Bayesian inference of epistatic interactions in case-control studies
-
10.1038/ng2110, 17721534
-
Zhang Y, Liu JS. Bayesian inference of epistatic interactions in case-control studies. Nat Genet 2007, 39:1167-1173. 10.1038/ng2110, 17721534.
-
(2007)
Nat Genet
, vol.39
, pp. 1167-1173
-
-
Zhang, Y.1
Liu, J.S.2
-
26
-
-
66649108315
-
Epistatic module detection for case-control studies: a bayesian model with a Gibbs sampling strategy
-
10.1371/journal.pgen.1000464, 2669883, 19412524
-
Tang W, Wu X, Jiang R, Li Y. Epistatic module detection for case-control studies: a bayesian model with a Gibbs sampling strategy. PLoS Genet 2009, 5(5):e1000464. 10.1371/journal.pgen.1000464, 2669883, 19412524.
-
(2009)
PLoS Genet
, vol.5
, Issue.5
-
-
Tang, W.1
Wu, X.2
Jiang, R.3
Li, Y.4
-
27
-
-
60849093174
-
A random forest approach to the detection of epistatic interactions in case-control studies
-
10.1186/1471-2105-10-S1-S65, 2648748, 19208169
-
Jiang R, Tang W, Wu X, Fu W. A random forest approach to the detection of epistatic interactions in case-control studies. BMC Bioinformatics 2009, 10(Suppl 1):S65. 10.1186/1471-2105-10-S1-S65, 2648748, 19208169.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL. 1
-
-
Jiang, R.1
Tang, W.2
Wu, X.3
Fu, W.4
-
28
-
-
84883332162
-
Cloud computing for de novo metagenomic sequence assembly
-
New York: Springer Berlin Heidelberg, Cai Z, Eulenstein O, Janies D, Schwartz D
-
Guo X, Ding X, Meng Y, Pan Y. Cloud computing for de novo metagenomic sequence assembly. Bioinformatics Research and Applications Volume, 7875 of Lecture Notes in Computer Science 2013, 185-198. New York: Springer Berlin Heidelberg, Cai Z, Eulenstein O, Janies D, Schwartz D.
-
(2013)
Bioinformatics Research and Applications Volume, 7875 of Lecture Notes in Computer Science
, pp. 185-198
-
-
Guo, X.1
Ding, X.2
Meng, Y.3
Pan, Y.4
-
29
-
-
77954182718
-
TEAM: efficient two-locus epistasis tests in human genome-wide association study
-
2881371, 20529910
-
Zhang X, Huang S, Zou F, Wang W. TEAM: efficient two-locus epistasis tests in human genome-wide association study. Bioinformatics 2010, 26(12):i217-i227. 2881371, 20529910.
-
(2010)
Bioinformatics
, vol.26
, Issue.12
-
-
Zhang, X.1
Huang, S.2
Zou, F.3
Wang, W.4
-
30
-
-
34247338434
-
A balanced accuracy function for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction
-
10.1002/gepi.20211, 17323372
-
Velez DR, White BC, Motsinger AA, Bush WS, Ritchie MD, Williams SM, Moore JH. A balanced accuracy function for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction. Genet Epidemiol 2007, 31(4):306-315. 10.1002/gepi.20211, 17323372.
-
(2007)
Genet Epidemiol
, vol.31
, Issue.4
, pp. 306-315
-
-
Velez, D.R.1
White, B.C.2
Motsinger, A.A.3
Bush, W.S.4
Ritchie, M.D.5
Williams, S.M.6
Moore, J.H.7
-
31
-
-
20244380171
-
Complement factor H polymorphism in age-related macular degeneration
-
10.1126/science.1109557, 1512523, 15761122
-
Klein RJ, Zeiss C, Chew EY, Tsai JY, Sackler RS, Haynes C, Henning AK, SanGiovanni JP, Mane SM, Mayne ST, Bracken MB, Ferris FL, Ott J, Barnstable C, Hoh J. Complement factor H polymorphism in age-related macular degeneration. Science 2005, 308(5720):385-389. 10.1126/science.1109557, 1512523, 15761122.
-
(2005)
Science
, vol.308
, Issue.5720
, pp. 385-389
-
-
Klein, R.J.1
Zeiss, C.2
Chew, E.Y.3
Tsai, J.Y.4
Sackler, R.S.5
Haynes, C.6
Henning, A.K.7
SanGiovanni, J.P.8
Mane, S.M.9
Mayne, S.T.10
Bracken, M.B.11
Ferris, F.L.12
Ott, J.13
Barnstable, C.14
Hoh, J.15
-
32
-
-
84878789628
-
ILOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies
-
Piriyapongsa J, Ngamphiw C, Intarapanich A, Kulawonganunchai S, Assawamakin A, Bootchai C, Shaw P, Tongsima S. iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies. BMC Genomics 2012, 13(Suppl 7):S2.
-
(2012)
BMC Genomics
, vol.13
, Issue.SUPPL. 7
-
-
Piriyapongsa, J.1
Ngamphiw, C.2
Intarapanich, A.3
Kulawonganunchai, S.4
Assawamakin, A.5
Bootchai, C.6
Shaw, P.7
Tongsima, S.8
-
33
-
-
67849130563
-
ToppGene suite for gene list enrichment analysis and candidate gene prioritization
-
2703978, 19465376
-
Chen J, Bardes EE, Aronow BJ, Jegga AG. ToppGene suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 2009, 37(suppl 2):W305-W311. 2703978, 19465376.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.SUPPL. 2
-
-
Chen, J.1
Bardes, E.E.2
Aronow, B.J.3
Jegga, A.G.4
-
34
-
-
80052271106
-
A fast parallel clustering algorithm for large spatial databases
-
New York: Springer US, Guo Y, Grossman R
-
Xu X, Jäger J, Kriegel HP. A fast parallel clustering algorithm for large spatial databases. High Performance Data Mining 2002, 263-290. New York: Springer US, Guo Y, Grossman R.
-
(2002)
High Performance Data Mining
, pp. 263-290
-
-
Xu, X.1
Jäger, J.2
Kriegel, H.P.3
-
35
-
-
84867408216
-
A novel method to identify high order gene-gene interactions in genome-wide association studies: Gene-based MDR
-
Oh S, Lee J, Kwon MS, Weir B, Ha K, Park T. A novel method to identify high order gene-gene interactions in genome-wide association studies: Gene-based MDR. BMC Bioinformatics 2012, 13(Suppl 9):S5.
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.SUPPL. 9
-
-
Oh, S.1
Lee, J.2
Kwon, M.S.3
Weir, B.4
Ha, K.5
Park, T.6
-
36
-
-
79957969024
-
Using constraints to generate and explore higher order discriminative patterns
-
New York: Springer Berlin Heidelberg, Huang J, Cao L, Srivastava J
-
Steinbach M, Yu H, Fang G, Kumar V. Using constraints to generate and explore higher order discriminative patterns. Advances in Knowledge Discovery and Data Mining, Volume 6634 2011, 338-350. New York: Springer Berlin Heidelberg, Huang J, Cao L, Srivastava J.
-
(2011)
Advances in Knowledge Discovery and Data Mining, Volume 6634
, pp. 338-350
-
-
Steinbach, M.1
Yu, H.2
Fang, G.3
Kumar, V.4
-
37
-
-
84899476061
-
Windows Azure Blobs: Programming Blob Storage
-
Windows Azure Blobs: Programming Blob Storage. [http://go.microsoft.com/fwlink/?LinkId=153400].
-
-
-
-
38
-
-
84899491883
-
Windows Azure Queue - Programming Queue Storage
-
Windows Azure Queue - Programming Queue Storage. [http://go.microsoft.com/fwlink/?LinkId=153402].
-
-
-
|