메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Reliable reference miRNAs for quantitative gene expression analysis of stress responses in Caenorhabditis elegans

Author keywords

miRNA; Normalization; qPCR analysis; Reference genes

Indexed keywords

COMPLEMENTARY DNA; MICRORNA; MICRORNA 2 5P; MICRORNA 230 3P; MICRORNA 241 3P; MICRORNA 254; MICRORNA 357 3P; MICRORNA 46 3P; MICRORNA 47 3P; MICRORNA 55 3P; MICRORNA 57 5P; MICRORNA 58 3P; MICRORNA 64 5P; MICRORNA 794 5P; MICRORNA 86 5P; UNCLASSIFIED DRUG; RNA;

EID: 84899066956     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-222     Document Type: Article
Times cited : (15)

References (17)
  • 1
    • 79952138034 scopus 로고    scopus 로고
    • QPCR: quicker and easier but don't be sloppy
    • Baker M. qPCR: quicker and easier but don't be sloppy. Nat Methods 2011, 8(3):207-212.
    • (2011) Nat Methods , vol.8 , Issue.3 , pp. 207-212
    • Baker, M.1
  • 3
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • 10.1038/sj.gene.6364190, 15815687
    • Huggett J, Dheda K, Bustin S, Zumla A. Real-time RT-PCR normalisation; strategies and considerations. Genes Immun 2005, 6(4):279-284. 10.1038/sj.gene.6364190, 15815687.
    • (2005) Genes Immun , vol.6 , Issue.4 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 4
    • 84858446579 scopus 로고    scopus 로고
    • NON-CODING RNA MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship
    • Pasquinelli AE. NON-CODING RNA MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship. Nature Reviews Genetics 2012, 13(4):271-282.
    • (2012) Nature Reviews Genetics , vol.13 , Issue.4 , pp. 271-282
    • Pasquinelli, A.E.1
  • 5
    • 79953748872 scopus 로고    scopus 로고
    • Invited review: decoding the microRNA response to hypoxia
    • 10.1007/s00424-010-0910-5, 21207057
    • Pocock R. Invited review: decoding the microRNA response to hypoxia. Pflugers Arch 2011, 461(3):307-315. 10.1007/s00424-010-0910-5, 21207057.
    • (2011) Pflugers Arch , vol.461 , Issue.3 , pp. 307-315
    • Pocock, R.1
  • 6
    • 84875347440 scopus 로고    scopus 로고
    • Neuronal responses to physiological stress
    • 3481051, 23112806
    • Kagias K, Nehammer C, Pocock R. Neuronal responses to physiological stress. Front Genet 2012, 3:222. 3481051, 23112806.
    • (2012) Front Genet , vol.3 , pp. 222
    • Kagias, K.1    Nehammer, C.2    Pocock, R.3
  • 7
    • 39849104918 scopus 로고    scopus 로고
    • Selection and validation of a set of reliable reference genes for quantitative sod gene expression analysis in C. elegans
    • 10.1186/1471-2199-9-9, 2254638, 18211699
    • Hoogewijs D, Houthoofd K, Matthijssens F, Vandesompele J, Vanfleteren JR. Selection and validation of a set of reliable reference genes for quantitative sod gene expression analysis in C. elegans. BMC Mol Biol 2008, 9:9. 10.1186/1471-2199-9-9, 2254638, 18211699.
    • (2008) BMC Mol Biol , vol.9 , pp. 9
    • Hoogewijs, D.1    Houthoofd, K.2    Matthijssens, F.3    Vandesompele, J.4    Vanfleteren, J.R.5
  • 8
    • 84863296768 scopus 로고    scopus 로고
    • Selection of reliable reference genes in Caenorhabditis elegans for analysis of nanotoxicity
    • 10.1371/journal.pone.0031849, 3305280, 22438870
    • Zhang Y, Chen D, Smith MA, Zhang B, Pan X. Selection of reliable reference genes in Caenorhabditis elegans for analysis of nanotoxicity. Plos One 2012, 7(3):e31849. 10.1371/journal.pone.0031849, 3305280, 22438870.
    • (2012) Plos One , vol.7 , Issue.3
    • Zhang, Y.1    Chen, D.2    Smith, M.A.3    Zhang, B.4    Pan, X.5
  • 9
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034 126239, 12184808
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3(7):RESEARCH0034. 126239, 12184808.
    • (2002) Genome Biol , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 10
    • 79959425811 scopus 로고    scopus 로고
    • Specific and sensitive quantitative RT-PCR of miRNAs with DNA primers
    • 10.1186/1472-6750-11-70, 3135530, 21702990
    • Balcells I, Cirera S, Busk PK. Specific and sensitive quantitative RT-PCR of miRNAs with DNA primers. BMC Biotechnol 2011, 11:70. 10.1186/1472-6750-11-70, 3135530, 21702990.
    • (2011) BMC Biotechnol , vol.11 , pp. 70
    • Balcells, I.1    Cirera, S.2    Busk, P.K.3
  • 11
    • 78650490230 scopus 로고    scopus 로고
    • MicroRNAs both promote and antagonize longevity in C. elegans
    • 10.1016/j.cub.2010.11.015, 3023310, 21129974
    • de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ. MicroRNAs both promote and antagonize longevity in C. elegans. Curr Biol 2010, 20(24):2159-2168. 10.1016/j.cub.2010.11.015, 3023310, 21129974.
    • (2010) Curr Biol , vol.20 , Issue.24 , pp. 2159-2168
    • de Lencastre, A.1    Pincus, Z.2    Zhou, K.3    Kato, M.4    Lee, S.S.5    Slack, F.J.6
  • 12
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • 10.1158/0008-5472.CAN-04-0496, 15289330
    • Andersen CL, Jensen JL, Orntoft TF. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 2004, 64(15):5245-5250. 10.1158/0008-5472.CAN-04-0496, 15289330.
    • (2004) Cancer Res , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 13
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-excel-based tool using pair-wise correlations
    • Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-excel-based tool using pair-wise correlations. Biotechnol Lett 2004, 26(6):509-515.
    • (2004) Biotechnol Lett , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 14
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • 1213120, 4366476
    • Brenner S. The genetics of Caenorhabditis elegans. Genetics 1974, 77(1):71-94. 1213120, 4366476.
    • (1974) Genetics , vol.77 , Issue.1 , pp. 71-94
    • Brenner, S.1
  • 15
    • 84887754659 scopus 로고    scopus 로고
    • Highly efficient method for isolation of total RNA from adipose tissue
    • 10.1186/1756-0500-6-472, 24245791
    • Cirera S. Highly efficient method for isolation of total RNA from adipose tissue. BMC research notes 2013, 6:472. 10.1186/1756-0500-6-472, 24245791.
    • (2013) BMC research notes , vol.6 , pp. 472
    • Cirera, S.1
  • 16
    • 84855293838 scopus 로고    scopus 로고
    • MiRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    • 10.1093/nar/gkr688, 3245920, 21911355
    • Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res 2012, 40(1):37-52. 10.1093/nar/gkr688, 3245920, 21911355.
    • (2012) Nucleic Acids Res , vol.40 , Issue.1 , pp. 37-52
    • Friedlander, M.R.1    Mackowiak, S.D.2    Li, N.3    Chen, W.4    Rajewsky, N.5
  • 17
    • 45449087921 scopus 로고    scopus 로고
    • QBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
    • 10.1186/gb-2007-8-2-r19, 1852402, 17291332
    • Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J. qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol 2007, 8(2):R19. 10.1186/gb-2007-8-2-r19, 1852402, 17291332.
    • (2007) Genome Biol , vol.8 , Issue.2
    • Hellemans, J.1    Mortier, G.2    De Paepe, A.3    Speleman, F.4    Vandesompele, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.