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Volumn 28, Issue 7, 2014, Pages 797-807

A genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis

Author keywords

C. elegans; Capped precursor; Genome wide; piRNA; RNAi screen; TOFU

Indexed keywords

21U RNA; MESSENGER RNA; MICRORNA; PIWI INTERACTING RNA; UNCLASSIFIED DRUG;

EID: 84898926413     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.235622.113     Document Type: Article
Times cited : (38)

References (36)
  • 5
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner S. 1974. The genetics of Caenorhabditis elegans. Genetics 77: 71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 8
    • 84890860526 scopus 로고    scopus 로고
    • Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans
    • Conine C. C, Moresco JJ, Gu W, Shirayama M, Conte D Jr, Yates JR 3rd, Mello CC. 2013. Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans. Cell 155: 1532-1544.
    • (2013) Cell , vol.155 , pp. 1532-1544
    • Conine, C.C.1    Moresco, J.J.2    Gu, W.3    Shirayama, M.4    Conte Jr., D.5    Yates III, J.R.6    Mello, C.C.7
  • 9
    • 84878851966 scopus 로고    scopus 로고
    • A transcriptomewide RNAi screen in the Drosophila ovary reveals factors of the germline piRNA pathway
    • Czech B., Preall JB, McGinn J, Hannon GJ. 2013. A transcriptomewide RNAi screen in the Drosophila ovary reveals factors of the germline piRNA pathway. Mol Cell 50: 749-761.
    • (2013) Mol Cell , vol.50 , pp. 749-761
    • Czech, B.1    Preall, J.B.2    McGinn, J.3    Hannon, G.J.4
  • 10
    • 84873047945 scopus 로고    scopus 로고
    • Structure and function of the SPRY/B30.2 domain proteins involved in innate immunity
    • D'Cruz AA, Babon JJ, Norton RS, Nicola NA, Nicholson SE. 2012. Structure and function of the SPRY/B30.2 domain proteins involved in innate immunity. Protein Sci 22: 1-10.
    • (2012) Protein Sci , vol.22 , pp. 1-10
    • D'Cruz, A.A.1    Babon, J.J.2    Norton, R.S.3    Nicola, N.A.4    Nicholson, S.E.5
  • 13
    • 17844364875 scopus 로고    scopus 로고
    • Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing
    • Grishok A., Pasquinelli AE, Conte D, Li N, Parrish S, Ha I, Baillie DL, Fire A, Ruvkun G, Mello CC. 2001. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 106: 23-34.
    • (2001) Cell , vol.106 , pp. 23-34
    • Grishok, A.1    Pasquinelli, A.E.2    Conte, D.3    Li, N.4    Parrish, S.5    Ha, I.6    Baillie, D.L.7    Fire, A.8    Ruvkun, G.9    Mello, C.C.10
  • 15
    • 84871593032 scopus 로고    scopus 로고
    • CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors
    • GuW, Lee H.-C, Chaves D, Youngman EM, Pazour GJ, Conte J D Jr, Mello CC. 2012. CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors. Cell 151: 1488-1500.
    • (2012) Cell , vol.151 , pp. 1488-1500
    • Gu, W.1    Lee, H.-C.2    Chaves, D.3    Youngman, E.M.4    Pazour, G.J.5    Conte Jr., J.D.6    Mello, C.C.7
  • 16
    • 84877921779 scopus 로고    scopus 로고
    • The piRNA pathway in flies: Highlights and future directions
    • Guzzardo P. M, Muerdter F, Hannon GJ. 2013. The piRNA pathway in flies: highlights and future directions. Curr Opin Genet Dev 23: 44-52.
    • (2013) Curr Opin Genet Dev , vol.23 , pp. 44-52
    • Guzzardo, P.M.1    Muerdter, F.2    Hannon, G.J.3
  • 17
    • 33750968469 scopus 로고    scopus 로고
    • The eggshell is required for meiotic fidelity, polar-body extrusion and polarization of the C. elegans embryo
    • Johnston W. L, Krizus A, Dennis JW. 2006. The eggshell is required for meiotic fidelity, polar-body extrusion and polarization of the C. elegans embryo. BMC Biol 4: 35.
    • (2006) BMC Biol , vol.4 , pp. 35
    • Johnston, W.L.1    Krizus, A.2    Dennis, J.W.3
  • 19
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: A case study using the Phyre server
    • Kelley L. A, Sternberg MJE. 2009. Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4: 363-371.
    • (2009) Nat Protoc , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.E.2
  • 20
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau N. C, Lim LP, Weinstein EG, Bartel DP. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 21
    • 34249740079 scopus 로고    scopus 로고
    • RNAi screens in Caenorhabditis elegans in a 96-well liquid format and their application to the systematic identification of genetic interactions
    • Lehner B., Tischler J, Fraser AG. 2006. RNAi screens in Caenorhabditis elegans in a 96-well liquid format and their application to the systematic identification of genetic interactions. Nat Protoc 1: 1617-1620.
    • (2006) Nat Protoc , vol.1 , pp. 1617-1620
    • Lehner, B.1    Tischler, J.2    Fraser, A.G.3
  • 23
    • 84861323247 scopus 로고    scopus 로고
    • The SUMO protease SENP7 is a critical component to ensure HP1 enrichment at pericentric heterochromatin
    • Maison C., Romeo K, Bailly D, Dubarry M, Quivy J-P, Almouzni G. 2012. The SUMO protease SENP7 is a critical component to ensure HP1 enrichment at pericentric heterochromatin. Nat Struct Mol Biol 19: 458-460.
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 458-460
    • Maison, C.1    Romeo, K.2    Bailly, D.3    Dubarry, M.4    Quivy, J.-P.5    Almouzni, G.6
  • 26
    • 84878847013 scopus 로고    scopus 로고
    • A genome-wide RNAi screen draws a genetic framework for transposon control and primary piRNA biogenesis in Drosophila
    • Muerdter F., Guzzardo PM, Gillis J, Luo Y, Yu Y, Chen C, Fekete R, Hannon GJ. 2013. A genome-wide RNAi screen draws a genetic framework for transposon control and primary piRNA biogenesis in Drosophila. Mol Cell 50: 736-748.
    • (2013) Mol Cell , vol.50 , pp. 736-748
    • Muerdter, F.1    Guzzardo, P.M.2    Gillis, J.3    Luo, Y.4    Yu, Y.5    Chen, C.6    Fekete, R.7    Hannon, G.J.8
  • 29
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby J. G, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel D.P. 2006. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127: 1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5    Nusbaum, C.6    Ge, H.7    Bartel, D.P.8
  • 30
    • 84890818459 scopus 로고    scopus 로고
    • The C. elegans CSR-1 argonaute pathway counteracts epigenetic silencing to promote germline gene expression
    • Seth M., Shirayama M, Gu W, Ishidate T, Conte D Jr., Mello CC. 2013. The C. elegans CSR-1 argonaute pathway counteracts epigenetic silencing to promote germline gene expression. Dev Cell 27: 656-663.
    • (2013) Dev Cell , vol.27 , pp. 656-663
    • Seth, M.1    Shirayama, M.2    Gu, W.3    Ishidate, T.4    Conte Jr., D.5    Mello, C.C.6
  • 31
    • 84863631177 scopus 로고    scopus 로고
    • piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline
    • Shirayama M., Seth M, Lee H-C, Gu W, Ishidate T, Conte D, Mello C.C. 2012. piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline. Cell 150: 65-77.
    • (2012) Cell , vol.150 , pp. 65-77
    • Shirayama, M.1    Seth, M.2    Lee, H.-C.3    Gu, W.4    Ishidate, T.5    Conte, D.6    Mello, C.C.7
  • 32
    • 79953089167 scopus 로고    scopus 로고
    • PIWI-interacting small RNAs: The vanguard of genome defence
    • Siomi M. C, Sato K, Pezic D, Aravin AA. 2011. PIWI-interacting small RNAs: the vanguard of genome defence. Nat Rev Mol Cell Biol 12: 246-258.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 246-258
    • Siomi, M.C.1    Sato, K.2    Pezic, D.3    Aravin, A.A.4
  • 33
    • 0032578911 scopus 로고    scopus 로고
    • Specific interference by ingested dsRNA
    • Timmons L., Fire A. 1998. Specific interference by ingested dsRNA. Nature 395: 854.
    • (1998) Nature , vol.395 , pp. 854
    • Timmons, L.1    Fire, A.2
  • 34
    • 45449118682 scopus 로고    scopus 로고
    • A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis
    • Wang G., Reinke V. 2008. A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis. Curr Biol 18: 861-867.
    • (2008) Curr Biol , vol.18 , pp. 861-867
    • Wang, G.1    Reinke, V.2
  • 35
    • 84890836064 scopus 로고    scopus 로고
    • Protection of germline gene expression by the C. elegans Argonaute CSR-1
    • Wedeles C. J, Wu MZ, Claycomb JM. 2013. Protection of germline gene expression by the C. elegans Argonaute CSR-1. Dev Cell 27: 664-671.
    • (2013) Dev Cell , vol.27 , pp. 664-671
    • Wedeles, C.J.1    Wu, M.Z.2    Claycomb, J.M.3
  • 36
    • 79960924226 scopus 로고    scopus 로고
    • Illustration of SSMD, z score, SSMD*, z* score, and t statistic for hit selection in RNAi high-throughput screens
    • Zhang X.D. 2011. Illustration of SSMD, z score, SSMD*, z* score, and t statistic for hit selection in RNAi high-throughput screens. J Biomol Screen 16: 775-785.
    • (2011) J Biomol Screen , vol.16 , pp. 775-785
    • Zhang, X.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.