Recent advances in molecular recognition based on nanoengineered platforms

Accounts of Chemical Research

Volumn 47, Issue 4, 2014, Pages 979-988

  Mu, Bin ^a   Zhang, Jingqing ^a   McNicholas, Thomas P ^a   Reuel, Nigel F ^a   Kruss, Sebastian ^a   Strano, Michael S ^a  

^a Massachusetts Institute of Technology Cambridge   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; BIOLOGICAL MARKER; CARBON NANOTUBE; HYDROGEN PEROXIDE; MONOSACCHARIDE; NANOMATERIAL; NITRIC OXIDE; POLYSACCHARIDE; PROTEIN;

BLOOD; CAPILLARY ELECTROPHORESIS; DEVICES; EQUIPMENT DESIGN; GENETIC PROCEDURES; HOSPITAL INFORMATION SYSTEM; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NANOTECHNOLOGY; PROCEDURES; SURFACE PROPERTY;

ADENOSINE TRIPHOSPHATE; BIOLOGICAL MARKERS; BIOSENSING TECHNIQUES; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, CAPILLARY; EQUIPMENT DESIGN; HYDROGEN PEROXIDE; MASS SPECTROMETRY; MONOSACCHARIDES; NANOSTRUCTURES; NANOTECHNOLOGY; NANOTUBES, CARBON; NITRIC OXIDE; POINT-OF-CARE SYSTEMS; POLYSACCHARIDES; PROTEINS; SURFACE PROPERTIES;

EID: 84898852234     PISSN: 00014842     EISSN: 15204898     Source Type: Journal    
DOI: 10.1021/ar400162w     Document Type: Article

References (53)

1. Duan, X.; Gao, R.; Xie, P.; Cohen-Karni, T.; Qing, Q.; Choe, H. S.; Tian, B.; Jiang, X.; Lieber, C. M. Intracellular recordings of action potentials by an extracellular nanoscale field-effect transistor Nat. Nanotechnol. 2012, 7, 174-179
2. Robinson, J. T.; Jorgolli, M.; Shalek, A. K.; Yoon, M. H.; Gertner, R. S.; Park, H. Vertical nanowire electrode arrays as a scalable platform for intracellular interfacing to neuronal circuits Nat. Nanotechnol. 2012, 7, 180-184
3. Yan, R.; Park, J. H.; Choi, Y.; Heo, C. J.; Yang, S. M.; Lee, L. P.; Yang, P. Nanowire-based single-cell endoscopy Nat. Nanotechnol. 2012, 7, 191-196
4. Saha, K.; Agasti, S. S.; Kim, C.; Li, X.; Rotello, V. M. Gold nanoparticles in chemical and biological sensing Chem. Rev. 2012, 112, 2739-2779
5. Asefa, T.; Duncan, C. T.; Sharma, K. K. Recent advances in nanostructured chemosensors and biosensors Analyst 2009, 134, 1980-1990
6. Doria, G.; Conde, J.; Veigas, B.; Giestas, L.; Almeida, C.; Assuncao, M.; Rosa, J.; Baptista, P. V. Noble metal nanoparticles for biosensing applications Sensors 2012, 12, 1657-1687
7. Shen, J.; Zhu, Y.; Yang, X.; Li, C. Graphene quantum dots: emergent nanolights for bioimaging, sensors, catalysis and photovoltaic devices Chem. Commun. 2012, 48, 3686-3699
8. Baker, S. N.; Baker, G. A. Luminescent carbon nanodots: emergent nanolights Angew. Chem., Int. Ed. Engl. 2010, 49, 6726-6744
9. Zhang, J.; Landry, M. P.; Barone, P. W.; Kim, J.-H.; Lin, S.; Ulissi, Z. W.; Lin, D.; Mu, B.; Boghossian, A. A.; Hilmer, A. J.; Rwei, A.; Hinckley, A. C.; Kruss, S.; Shandell, M. A.; Nair, N.; Blake, S.; Sen, F.; Sen, S.; Croy, R. G.; Li, D.; Yum, K.; Ahn, J.-H.; Jin, H.; Heller, D. A.; Essigmann, J. M.; Blankschtein, D.; Strano, M. S. Molecular recognition using corona phase complexes made of synthetic polymers adsorbed on carbon nanotubes Nat. Nano 2013, 8, 959-968
10. Tavassoli, A.; Hamilton, A. D.; Spring, D. R. Small molecules in biology Chem. Soc. Rev. 2011, 40, 4269-4270
11. Harkness, R. A.; Saugstad, O. D. The importance of the measurement of ATP depletion and subsequent cell damage with an estimate of size and nature of the market for a practicable method: a review designed for technology transfer Scandinavian J. Clin. Lab. Invest. 1997, 57, 655-672
12. Frundzhyan, V.; Ugarova, N. Bioluminescent assay of total bacterial contamination of drinking water Luminescence 2007, 22, 241-244
13. Kennedy, H. J.; Pouli, A. E.; Ainscow, E. K.; Jouaville, L. S.; Rizzuto, R.; Rutter, G. A. Glucose generates sub-plasma membrane ATP microdomains in single islet beta-cells-Potential role for strategically located mitochondria J. Biol. Chem. 1999, 274, 13281-13291
14. Hirst, D. G.; Robson, T. Nitric Oxide Physiology and Pathology. In Nitric Oxide: Methods and Protocols; McCarthy, H. O.; Coulter, J. A., Eds.; Humana Press, Inc.: New York, 2011; Vol. 704, pp 1-13.
15. Tonzetich, Z. J.; McQuade, L. E.; Lippard, S. J. Detecting and Understanding the Roles of Nitric Oxide in Biology Inorg. Chem. 2010, 49, 6338-6348
16. Imlay, J. A. Cellular defenses against superoxide and hydrogen peroxide Annu. Rev. Biochem. 2008, 77, 755-776
17. Efe, J. A.; Ding, S. The evolving biology of small molecules: controlling cell fate and identity Philos. Trans. R. Soc., B 2011, 366, 2208-2221
18. McElroy, W. D. The Energy Source for Bioluminescence in an Isolated System Proc. Natl. Acad. Sci. U.S.A. 1947, 33, 342-345
19. Kim, J.-H.; Ahn, J.-H.; Barone, P. W.; Jin, H.; Zhang, J.; Heller, D. A.; Strano, M. S. A Luciferase/Single-Walled Carbon Nanotube Conjugate for Near-Infrared Fluorescent Detection of Cellular ATP Angew. Chem., Int. Ed. 2010, 49, 1456-1459
20. Kojima, H.; Nakatsubo, N.; Kikuchi, K.; Kawahara, S.; Kirino, Y.; Nagoshi, H.; Hirata, Y.; Nagano, T. Detection and imaging of nitric oxide with novel fluorescent indicators: Diaminofluoresceins Anal. Chem. 1998, 70, 2446-2453
21. Lim, M. H.; Xu, D.; Lippard, S. J. Visualization of nitric oxide in living cells by a copper-based fluorescent probe Na. Chem. Biol. 2006, 2, 375-380
22. Kim, J.-H.; Heller, D. A.; Jin, H.; Barone, P. W.; Song, C.; Zhang, J.; Trudel, L. J.; Wogan, G. N.; Tannenbaum, S. R.; Strano, M. S. The rational design of nitric oxide selectivity in single-walled carbon nanotube near-infrared fluorescence sensors for biological detection Na. Chem. 2009, 1, 473-481
23. Zhang, J.; Boghossian, A. A.; Barone, P. W.; Rwei, A.; Kim, J.-H.; Lin, D.; Heller, D. A.; Hilmer, A. J.; Nair, N.; Reuel, N. F.; Strano, M. S. Single Molecule Detection of Nitric Oxide Enabled by d(AT)15 DNA Adsorbed to Near Infrared Fluorescent Single-Walled Carbon Nanotubes J. Am. Chem. Soc. 2011, 133, 567-581
24. 2 signalling from epidermal growth factor receptor using fluorescent single-walled carbon nanotubes Nat. Nanotechnol. 2010, 5, 302-309
25. Yoon, H. A.; Ahn, J. H.; Barone, P. W.; Yum, K.; Sharma, R.; Boghossian, A. A.; Han, J. H.; Strano, M. S. Periplasmic Binding Proteins as Optical Modulators of Single-Walled Carbon Nanotube Fluorescence: Amplifying a Nanoscale Actuator Angew. Chem., Int. Ed. 2011, 50, 1828-1831
26. Zhang, J. H. W.; Hutnick, C.; Wang, X. Noninvasive Diagnostic Devices for Diabetes through Measuring Tear Glucose J. Diabetes Sci. Technol. 2011, 5, 166-172
27. Yum, K.; Ahn, J. H.; McNicholas, T. P.; Barone, P. W.; Mu, B.; Kim, J. H.; Jain, R. M.; Strano, M. S. Boronic Acid Library for Selective, Reversible Near-Infrared Fluorescence Quenching of Surfactant Suspended Single-Walled Carbon Nanotubes in Response to Glucose ACS Nano 2012, 6, 819-830
28. Mu, B.; McNicholas, T. P.; Zhang, J.; Hilmer, A. J.; Jin, Z.; Reuel, N. F.; Kim, J.-H.; Yum, K.; Strano, M. S. A Structure-Function Relationship for the Optical Modulation of Phenyl Boronic Acid-Grafted, Polyethylene Glycol-Wrapped Single-Walled Carbon Nanotubes J. Am. Chem. Soc. 2012, 134, 17620-17627
29. Varki, A. Essentials of Glycobiology, 2 nd ed.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 2009.
30. Rudd, P. M.; Dwek, R. A. Glycosylation: Heterogeneity and the 3D structure of proteins Crit. Rev. Biochem. Mol. Biol. 1997, 32, 1-100
31. Vanderschaeghe, D.; Festjens, N.; Delanghe, J.; Callewaert, N. Glycome profiling using modern glycomics technology: technical aspects and applications Biol. Chem. 2010, 391, 149-161
32. Yamada, K.; Kakehi, K. Recent advances in the analysis of carbohydrates for biomedical use J. Pharm. Biomed. Anal. 2011, 55, 702-727
33. Reuel, N. F.; Mu, B.; Zhang, J.; Hinckley, A.; Strano, M. S. Nanoengineered glycan sensors enabling native glycoprofiling for medicinal applications: towards profiling glycoproteins without labeling or liberation steps Chem. Soc. Rev. 2012, 41, 5744-5779
34. Vedala, H.; Chen, Y. A.; Cecioni, S.; Imberty, A.; Vidal, S.; Star, A. Nanoelectronic Detection of Lectin-Carbohydrate Interactions Using Carbon Nanotubes Nano Lett. 2011, 11, 170-175
35. Xue, Y. D.; Ding, L.; Lei, J. P.; Ju, H. X. A simple electrochemical lectin-probe for in situ homogeneous cytosensing and facile evaluation of cell surface glycan Biosens. Bioelectron. 2010, 26, 169-174
36. Reuel, N. F.; Ahn, J. H.; Kim, J. H.; Zhang, J. Q.; Boghossian, A. A.; Mahal, L. K.; Strano, M. S. Transduction of Glycan-Lectin Binding Using Near-Infrared Fluorescent Single-Walled Carbon Nanotubes for Glycan Profiling J. Am. Chem. Soc. 2011, 133, 17923-17933
37. Lerner, M. B.; D'Souza, J.; Pazina, T.; Dailey, J.; Goldsmith, B. R.; Robinson, M. K.; Johnson, A. T. C. Hybrids of a Genetically Engineered Antibody and a Carbon Nanotube Transistor for Detection of Prostate Cancer Biomarkers ACS Nano 2012, 6, 5143-5149
38. Stern, E.; Vacic, A.; Rajan, N. K.; Criscione, J. M.; Park, J.; Ilic, B. R.; Mooney, D. J.; Reed, M. A.; Fahmy, T. M. Label-free biomarker detection from whole blood Nat. Nanotechnol. 2010, 5, 138-142
39. Chang, H.-K.; Ishikawa, F. N.; Zhang, R.; Datar, R.; Cote, R. J.; Thompson, M. E.; Zhou, C. Rapid, Label-Free, Electrical Whole Blood Bioassay Based on Nanobiosensor Systems ACS Nano 2011, 5, 9883-9891
40. Rohrbach, F.; Karadeniz, H.; Erdem, A.; Famulok, M.; Mayer, G. Label-free impedimetric aptasensor for lysozyme detection based on carbon nanotube-modified screen-printed electrodes Anal. Biochem. 2012, 421, 454-459
41. Lan, T.; Dong, C.; Huang, X.; Ren, J. Single particle technique for one-step homogeneous detection of cancer marker using gold nanoparticle probes Analyst 2011, 136, 4247-4253
42. Cho, H.; Yeh, E.-C.; Sinha, R.; Laurence, T. A.; Bearinger, J. P.; Lee, L. P. Single-Step Nanoplasmonic VEGF165 Aptasensor for Early Cancer Diagnosis ACS Nano 2012, 6, 7607-7614
43. Ahn, J.-H.; Kim, J.-H.; Reuel, N. F.; Barone, P. W.; Boghossian, A. A.; Zhang, J.; Yoon, H.; Chang, A. C.; Hilmer, A. J.; Strano, M. S. Label-Free, Single Protein Detection on a Near-Infrared Fluorescent Single-Walled Carbon Nanotube/Protein Microarray Fabricated by Cell-Free Synthesis Nano Lett. 2011, 11, 2743-2752
44. Kim, A.; Ah, C. S.; Park, C. W.; Yang, J.-H.; Kim, T.; Ahn, C.-G.; Park, S. H.; Sung, G. Y. Direct label-free electrical immunodetection in human serum using a flow-through-apparatus approach with integrated field-effect transistors Biosens. Bioelectron. 2010, 25, 1767-1773
45. Moertel, C. G.; Fleming, T. R.; Macdonald, J. S.; Haller, D. G.; Laurie, J. A.; Tangen, C. An evaluation of the carcinoembryonic antigen (cea) test for monitoring patients with resected colon cancer JAMA, J. Am. Med. Assoc. 1993, 270, 943-947
46. Palaniappan, A.; Goh, W. H.; Tey, J. N.; Wijaya, I. P. M.; Moochhala, S. M.; Liedberg, B.; Mhaisalkar, S. G. Aligned carbon nanotubes on quartz substrate for liquid gated biosensing Biosens. Bioelectron. 2010, 25, 1989-1993
47. de la Escosura-Muñiz, A.; Merkoçi, A. A Nanochannel/ Nanoparticle-Based Filtering and Sensing Platform for Direct Detection of a Cancer Biomarker in Blood Small 2011, 7, 675-682
48. Ilyas, A.; Asghar, W.; Allen, P. B.; Duhon, H.; Ellington, A. D.; Iqbal, S. M. Electrical detection of cancer biomarker using aptamers with nanogap break-junctions Nanotechnology 2012, 23, 275502-275509
49. Gokhale, A. S.; Haddad, R. I.; Cavacini, L. A.; Wirth, L.; Weeks, L.; Hallar, M.; Faucher, J.; Posner, M. R. Serum concentrations of interleukin-8, vascular endothelial growth factor, and epidermal growth factor receptor in patients with squamous cell cancer of the head and neck Oral Oncol. 2005, 41, 70-76
50. Vermeeren, V.; Grieten, L.; Vanden Bon, N.; Bijnens, N.; Wenmackers, S.; Janssens, S. D.; Haenen, K.; Wagner, P.; Michiels, L. Impedimetric, diamond-based immmunosensor for the detection of C-reactive protein Sens. Actuators, B 2011, 157, 130-138
51. Jin, H.; Heller, D. A.; Strano, M. S. Single-Particle Tracking of Endocytosis and Exocytosis of Single-Walled Carbon Nanotubes in NIH-3T3 Cells Nano Lett. 2008, 8, 1577-1585
52. Wangoo, N.; Kaushal, J.; Bhasin, K. K.; Mehta, S. K.; Suri, C. R. Zeta potential based colorimetric immunoassay for the direct detection of diabetic marker HbA1c using gold nanoprobes Chem. Commun. 2010, 46, 5755-5757
53. Kruss, S.; Landry, M. P.; Ende, E. V.; Lima, B. M.; Reuel, N. F.; Zhang, J.; Nelson, J.; Mu, B.; Hilmer, A.; Strano, M. Neurotransmitter Detection Using Corona Phase Molecular Recognition on Fluorescent Single-Walled Carbon Nanotube Sensors J. Am. Chem. Soc. 2014, 136, 713-724