-
1
-
-
0030727942
-
Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques
-
Aljanabi, S.M., and Martinez, I. (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res 25: 4692-4693.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4692-4693
-
-
Aljanabi, S.M.1
Martinez, I.2
-
2
-
-
0034633749
-
Classes of small-world networks
-
Amaral, L.A.N., Scala, A., Barthélémy, M., and Stanley, H.E. (2000) Classes of small-world networks. Proc Natl Acad Sci USA 97: 11149-11152.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11149-11152
-
-
Amaral, L.A.N.1
Scala, A.2
Barthélémy, M.3
Stanley, H.E.4
-
3
-
-
0038483826
-
Emergence of scaling in random networks
-
Barbási, A.L., and Albert, R. (1999) Emergence of scaling in random networks. Science 286: 509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barbási, A.L.1
Albert, R.2
-
4
-
-
0042424615
-
The nested assembly of plant-animal mutualistic networks
-
Bascompte, J., Jordano, P., Melián, C.J., and Olesen, J.M. (2003) The nested assembly of plant-animal mutualistic networks. Proc Natl Acad Sci USA 100: 9383-9387.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9383-9387
-
-
Bascompte, J.1
Jordano, P.2
Melián, C.J.3
Olesen, J.M.4
-
5
-
-
84873799110
-
Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli
-
Bertani, G. (1951) Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. J Bacteriol 62: 293-300.
-
(1951)
J Bacteriol
, vol.62
, pp. 293-300
-
-
Bertani, G.1
-
6
-
-
0013923824
-
Production of a pyrrole antibiotic by a marine bacterium
-
Burkholder, P.R., Pfister, R.M., and Leitz, F.H. (1966) Production of a pyrrole antibiotic by a marine bacterium. Appl Microbiol 14: 649-653.
-
(1966)
Appl Microbiol
, vol.14
, pp. 649-653
-
-
Burkholder, P.R.1
Pfister, R.M.2
Leitz, F.H.3
-
7
-
-
40249107687
-
Social network analysis: a methodological introduction
-
Butts, C.T. (2008) Social network analysis: a methodological introduction. Asian J Soc Psychol 11: 13-41.
-
(2008)
Asian J Soc Psychol
, vol.11
, pp. 13-41
-
-
Butts, C.T.1
-
8
-
-
79952429285
-
Diversity of culturable thermo-resistant aquatic bacteria along an environmental gradient in Cuatro Ciénegas, Coahuila, México
-
Cerritos, R., Eguiarte, L.E., Avitia, M., Siefert, J., Travisano, M., Rodríguez-Verdugo, A., and Souza, V. (2011) Diversity of culturable thermo-resistant aquatic bacteria along an environmental gradient in Cuatro Ciénegas, Coahuila, México. Antonie Van Leeuwenhoek 99: 303-318.
-
(2011)
Antonie Van Leeuwenhoek
, vol.99
, pp. 303-318
-
-
Cerritos, R.1
Eguiarte, L.E.2
Avitia, M.3
Siefert, J.4
Travisano, M.5
Rodríguez-Verdugo, A.6
Souza, V.7
-
9
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole, J.R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R.J., etal. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
-
10
-
-
84865832282
-
Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance
-
Cordero, O.X., Wildschutte, H., Kirkup, B., Proehl, S., Ngo, L., Hussain, F., etal. (2012) Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance. Science 337: 1228-1231.
-
(2012)
Science
, vol.337
, pp. 1228-1231
-
-
Cordero, O.X.1
Wildschutte, H.2
Kirkup, B.3
Proehl, S.4
Ngo, L.5
Hussain, F.6
-
11
-
-
0037625304
-
Killer-sensitive coexistence in metapopulations of micro-organisms
-
Czárán, T.L., and Hoekstra, R.F. (2003) Killer-sensitive coexistence in metapopulations of micro-organisms. Proc Biol Sci 270: 1373-1378.
-
(2003)
Proc Biol Sci
, vol.270
, pp. 1373-1378
-
-
Czárán, T.L.1
Hoekstra, R.F.2
-
12
-
-
0037154213
-
Chemical warfare between microbes promotes biodiversity
-
Czárán, T.L., Hoekstra, R.F., and Pagie, L. (2002) Chemical warfare between microbes promotes biodiversity. Proc Natl Acad Sci USA 99: 786-790.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 786-790
-
-
Czárán, T.L.1
Hoekstra, R.F.2
Pagie, L.3
-
13
-
-
3042666256
-
Muscle: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
14
-
-
45149118029
-
Diversity of aquatic prokaryotic communities in the Cuatro Cienegas basin
-
Escalante, A.E., Eguiarte, L.E., Espinosa-Asuar, L., Forney, L.J., Noguez, A.M., and Souza Saldivar, V. (2008) Diversity of aquatic prokaryotic communities in the Cuatro Cienegas basin. FEMS Microbiol Ecol 65: 50-60.
-
(2008)
FEMS Microbiol Ecol
, vol.65
, pp. 50-60
-
-
Escalante, A.E.1
Eguiarte, L.E.2
Espinosa-Asuar, L.3
Forney, L.J.4
Noguez, A.M.5
Souza Saldivar, V.6
-
15
-
-
0034929938
-
Rock-scissors-paper and the survival of the weakest
-
Frean, M., and Abraham, E.R. (2001) Rock-scissors-paper and the survival of the weakest. Proc Biol Sci 268: 1323-1327.
-
(2001)
Proc Biol Sci
, vol.268
, pp. 1323-1327
-
-
Frean, M.1
Abraham, E.R.2
-
16
-
-
40449105326
-
The ecological and evolutionary dynamics of model bacteriocin communities
-
Riley, M.A., and Chavan, M.A. (eds). Berlin, Germany: Springer-Verlag
-
Kerr, B. (2007) The ecological and evolutionary dynamics of model bacteriocin communities. In Bacteriocins: Ecology and Evolution. Riley, M.A., and Chavan, M.A. (eds). Berlin, Germany: Springer-Verlag, pp. 111-134.
-
(2007)
Bacteriocins: Ecology and Evolution
, pp. 111-134
-
-
Kerr, B.1
-
17
-
-
0037062936
-
Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors
-
Kerr, B., Riley, M.A., Feldman, M.W., and Bohannan, B.J. (2002) Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 418: 171-174.
-
(2002)
Nature
, vol.418
, pp. 171-174
-
-
Kerr, B.1
Riley, M.A.2
Feldman, M.W.3
Bohannan, B.J.4
-
18
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt, E., and Goodfellow, M. (eds). New York, USA: John Wiley and Sons
-
Lane, D.J. (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt, E., and Goodfellow, M. (eds). New York, USA: John Wiley and Sons, pp. 115-175.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
19
-
-
0037154251
-
Chemical warfare from an ecological perspective
-
Lenski, R.E., and Riley, M.A. (2002) Chemical warfare from an ecological perspective. Proc Natl Acad Sci USA 99: 556-558.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 556-558
-
-
Lenski, R.E.1
Riley, M.A.2
-
20
-
-
34249059962
-
Bacterium-bacterium inhibitory interactions among psychrotrophic bacteria isolated from Antarctic seawater (Terra Nova Bay, Ross Sea)
-
Lo Giudice, A., Brilli, M., Bruni, V., De Domenico, M., Fani, R., and Michaud, L. (2007) Bacterium-bacterium inhibitory interactions among psychrotrophic bacteria isolated from Antarctic seawater (Terra Nova Bay, Ross Sea). FEMS Microbiol Ecol 60: 383-396.
-
(2007)
FEMS Microbiol Ecol
, vol.60
, pp. 383-396
-
-
Lo Giudice, A.1
Brilli, M.2
Bruni, V.3
De Domenico, M.4
Fani, R.5
Michaud, L.6
-
21
-
-
84870986530
-
Antagonistic interactions between heterotrophic bacteria as a potential regulator of community structure of hypersaline microbial mats
-
Long, R.A., Eveillard, D., Franco, S.L., Reeves, E., and Pinckney, J.L. (2013) Antagonistic interactions between heterotrophic bacteria as a potential regulator of community structure of hypersaline microbial mats. FEMS Microbiol Ecol 83: 74-81.
-
(2013)
FEMS Microbiol Ecol
, vol.83
, pp. 74-81
-
-
Long, R.A.1
Eveillard, D.2
Franco, S.L.3
Reeves, E.4
Pinckney, J.L.5
-
22
-
-
1842855363
-
Interference competition and parasite virulence
-
Massey, R.C., Buckling, A., and ffrench-Constant, R. (2004) Interference competition and parasite virulence. Proc Biol Sci 271: 785-788.
-
(2004)
Proc Biol Sci
, vol.271
, pp. 785-788
-
-
Massey, R.C.1
Buckling, A.2
ffrench-Constant, R.3
-
23
-
-
0036589162
-
The pyocins of Pseudomonas aeruginosa
-
Michel-Briand, Y., and Baysse, C. (2002) The pyocins of Pseudomonas aeruginosa. Biochimie 84: 499-510.
-
(2002)
Biochimie
, vol.84
, pp. 499-510
-
-
Michel-Briand, Y.1
Baysse, C.2
-
24
-
-
78751558547
-
-
Creating the CIPRES Science Gateway for inference of large phylogenetic tree. In Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, LA, USA. Anonymous (ed.). New York, NY, USA: Institute of Electrical and Electronics Engineers (IEEE)
-
Miller, M.A., Pfeiffer, W., and Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic tree. In Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, LA, USA. Anonymous (ed.). New York, NY, USA: Institute of Electrical and Electronics Engineers (IEEE), pp. 1-8.
-
(2010)
, pp. 1-8
-
-
Miller, M.A.1
Pfeiffer, W.2
Schwartz, T.3
-
25
-
-
84864366710
-
Parallel evolution and horizontal gene transfer of the pst operon in firmicutes from oligotrophic environments
-
Article ID .
-
Moreno-Letelier, A., Olmedo, G., Eguiarte, L.E., Martinez-Castilla, L., and Souza, V. (2011) Parallel evolution and horizontal gene transfer of the pst operon in firmicutes from oligotrophic environments. Int J Evol Biol 2011: Article ID 781642.
-
(2011)
Int J Evol Biol
, vol.2011
, pp. 781642
-
-
Moreno-Letelier, A.1
Olmedo, G.2
Eguiarte, L.E.3
Martinez-Castilla, L.4
Souza, V.5
-
26
-
-
18744389789
-
Assortative mixing in networks
-
Article ID .
-
Newman, M.E.J. (2002) Assortative mixing in networks. Phys Rev Lett 89: Article ID 208701.
-
(2002)
Phys Rev Lett
, vol.89
, pp. 208701
-
-
Newman, M.E.J.1
-
27
-
-
0038718854
-
The structure and function of complex networks
-
Newman, M.E.J. (2003) The structure and function of complex networks. SIAM Rev 45: 167-256.
-
(2003)
SIAM Rev
, vol.45
, pp. 167-256
-
-
Newman, M.E.J.1
-
28
-
-
0033590512
-
Colicin diversity: a result of eco-evolutionary dynamics
-
Pagie, L., and Hogeweg, P. (1999) Colicin diversity: a result of eco-evolutionary dynamics. J Theor Biol 196: 251-261.
-
(1999)
J Theor Biol
, vol.196
, pp. 251-261
-
-
Pagie, L.1
Hogeweg, P.2
-
29
-
-
84876462101
-
Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network
-
Pérez-Gutiérrez, R.A., López-Ramírez, V., Islas, A., Alcaraz, L.D., Hernández-González, I., Olivera, B.C., etal. (2013) Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network. ISME J 7: 487-497.
-
(2013)
ISME J
, vol.7
, pp. 487-497
-
-
Pérez-Gutiérrez, R.A.1
López-Ramírez, V.2
Islas, A.3
Alcaraz, L.D.4
Hernández-González, I.5
Olivera, B.C.6
-
30
-
-
80054093621
-
Antagonistic interaction networks among bacteria from a cold soil environment
-
Prasad, S., Manasa, P., Buddhi, S., Singh, S.M., and Shivaji, S. (2011) Antagonistic interaction networks among bacteria from a cold soil environment. FEMS Microbiol Ecol 78: 376-385.
-
(2011)
FEMS Microbiol Ecol
, vol.78
, pp. 376-385
-
-
Prasad, S.1
Manasa, P.2
Buddhi, S.3
Singh, S.M.4
Shivaji, S.5
-
31
-
-
20144380698
-
Network thinking in ecology and evolution
-
Proulx, S.R., Promislow, D.E., and Phillips, P.C. (2005) Network thinking in ecology and evolution. Trends Ecol Evol 20: 345-353.
-
(2005)
Trends Ecol Evol
, vol.20
, pp. 345-353
-
-
Proulx, S.R.1
Promislow, D.E.2
Phillips, P.C.3
-
32
-
-
84865797057
-
Water-sediment niche differentiation in ancient marine lineages of Exiguobacterium endemic to the Cuatro Cienegas Basin
-
Rebollar, E.A., Avitia, M., Eguiarte, L.E., González-González, A., Mora, L., Bonilla-Rosso, G., and Souza, V. (2012) Water-sediment niche differentiation in ancient marine lineages of Exiguobacterium endemic to the Cuatro Cienegas Basin. Environ Microbiol 14: 2323-2333.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2323-2333
-
-
Rebollar, E.A.1
Avitia, M.2
Eguiarte, L.E.3
González-González, A.4
Mora, L.5
Bonilla-Rosso, G.6
Souza, V.7
-
33
-
-
33645964285
-
A new algorithm to calculate the nestedness temperature of presence-absence matrices
-
Rodríguez-Gironés, M.A., and Santamaría, L. (2006) A new algorithm to calculate the nestedness temperature of presence-absence matrices. J Biogeogr 33: 924-935.
-
(2006)
J Biogeogr
, vol.33
, pp. 924-935
-
-
Rodríguez-Gironés, M.A.1
Santamaría, L.2
-
34
-
-
84867753773
-
Diversity across seasons of culturable Pseudomonas from a desiccation lagoon in Cuatro Cienegas, Mexico
-
Manuscript ID .
-
Rodríguez-Verdugo, A., Souza, V., Eguiarte, L.E., and Escalante, A.E. (2012) Diversity across seasons of culturable Pseudomonas from a desiccation lagoon in Cuatro Cienegas, Mexico. Int J Microbiol 2012: Manuscript ID 201389.
-
(2012)
Int J Microbiol
, vol.2012
, pp. 201389
-
-
Rodríguez-Verdugo, A.1
Souza, V.2
Eguiarte, L.E.3
Escalante, A.E.4
-
35
-
-
73349108433
-
Antagonistic interactions among coral-associated bacteria
-
Rypien, K.L., Ward, J.R., and Azam, F. (2010) Antagonistic interactions among coral-associated bacteria. Environ Microbiol 12: 28-39.
-
(2010)
Environ Microbiol
, vol.12
, pp. 28-39
-
-
Rypien, K.L.1
Ward, J.R.2
Azam, F.3
-
36
-
-
45449086677
-
Microbial endemism: does extreme nutrient limitation enhance speciation?
-
Souza, V., Eguiarte, L.E., Siefert, J., and Elser, J. (2008) Microbial endemism: does extreme nutrient limitation enhance speciation? Nat Rev Microbiol 6: 559-564.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 559-564
-
-
Souza, V.1
Eguiarte, L.E.2
Siefert, J.3
Elser, J.4
-
37
-
-
84865460228
-
Travel, sex, and food: what's speciation got to do with it?
-
Souza, V., Eguiarte, L.E., Travisano, M., Elser, J.J., Rooks, C., and Siefert, J.L. (2012) Travel, sex, and food: what's speciation got to do with it? Astrobiology 12: 634-640.
-
(2012)
Astrobiology
, vol.12
, pp. 634-640
-
-
Souza, V.1
Eguiarte, L.E.2
Travisano, M.3
Elser, J.J.4
Rooks, C.5
Siefert, J.L.6
-
38
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
39
-
-
0035826155
-
Exploring complex networks
-
Strogatz, S.H. (2001) Exploring complex networks. Nature 410: 268-276.
-
(2001)
Nature
, vol.410
, pp. 268-276
-
-
Strogatz, S.H.1
-
40
-
-
11144296901
-
Antagonistic activity among 2,4-diacetylphloroglucinol-producing fluorescent Pseudomonas spp
-
Validov, S., Mavrodi, O., De La Fuente, L., Boronin, A., Weller, D., Thomashow, L., and Mavrodi, D. (2005) Antagonistic activity among 2, 4-diacetylphloroglucinol-producing fluorescent Pseudomonas spp. FEMS Microbiol Lett 242: 249-256.
-
(2005)
FEMS Microbiol Lett
, vol.242
, pp. 249-256
-
-
Validov, S.1
Mavrodi, O.2
De La Fuente, L.3
Boronin, A.4
Weller, D.5
Thomashow, L.6
Mavrodi, D.7
-
41
-
-
80055055710
-
Structure and evolution of Streptomyces interaction networks in soil and in silico
-
Vetsigian, K., Jajoo, R., and Kishony, R. (2011) Structure and evolution of Streptomyces interaction networks in soil and in silico. PLoS Biol 9: e1001184.
-
(2011)
PLoS Biol
, vol.9
-
-
Vetsigian, K.1
Jajoo, R.2
Kishony, R.3
-
42
-
-
34548293679
-
Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G.M., Tiedje, J.M., and Cole, J.R. (2007) Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
|