메뉴 건너뛰기




Volumn 14, Issue 9, 2012, Pages 2323-2333

Water-sediment niche differentiation in ancient marine lineages of Exiguobacterium endemic to the Cuatro Cienegas Basin

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACILLACEAE; BIODIVERSITY; CLASSIFICATION; ECOLOGY; ECOSYSTEM; GENETICS; METABOLISM; MEXICO; MICROBIOLOGY; PHYLOGENY; PHYSIOLOGY; SALINITY;

EID: 84865797057     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2012.02784.x     Document Type: Article
Times cited : (28)

References (47)
  • 1
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen, T.C., Philippe, H., and Bryant, D. (2006) A simple and robust statistical test for detecting the presence of recombination. Genetics 172: 2665-2681.
    • (2006) Genetics , vol.172 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 2
  • 3
    • 0034467820 scopus 로고    scopus 로고
    • Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
    • Cho, J., and Tiedje, J.M. (2000) Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl Environ Microbiol 66: 5448-5456.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5448-5456
    • Cho, J.1    Tiedje, J.M.2
  • 4
    • 55249124606 scopus 로고    scopus 로고
    • The origins of ecological diversity in prokaryotes
    • Cohan, F.M., and Koeppel, A.F. (2008) The origins of ecological diversity in prokaryotes. Curr Biol 18: R1024-R1034.
    • (2008) Curr Biol , vol.18
    • Cohan, F.M.1    Koeppel, A.F.2
  • 5
    • 0000619516 scopus 로고
    • Chemotaxonomic study of an alkalophilic bacterium, Exiguobacterium aurantiacum gen. Nov., sp. nov
    • Collins, M.D., Lund, B.M., Farrow, J.A.E., and Schleifer, K.H. (1983) Chemotaxonomic study of an alkalophilic bacterium, Exiguobacterium aurantiacum gen. Nov., sp. nov. J Gen Microbiol 129: 2037-2042.
    • (1983) J Gen Microbiol , vol.129 , pp. 2037-2042
    • Collins, M.D.1    Lund, B.M.2    Farrow, J.A.E.3    Schleifer, K.H.4
  • 6
    • 33847220418 scopus 로고    scopus 로고
    • Exiguobacterium profundum sp. nov., a moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent
    • Crapart, S., Fardeau, M.L., Cayol, J.L., Thomas, P., Sery, C., Ollivier, B., and Combet-Blanc, Y. (2007) Exiguobacterium profundum sp. nov., a moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 57: 287-292.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 287-292
    • Crapart, S.1    Fardeau, M.L.2    Cayol, J.L.3    Thomas, P.4    Sery, C.5    Ollivier, B.6    Combet-Blanc, Y.7
  • 7
    • 41149159700 scopus 로고    scopus 로고
    • Biodiversity and biogeography of phages in modern stromatolites and thrombolites
    • Desnues, C., Rodriguez-Brito, B., Rayhawk, S., Kelley, S., Tran, T., Haynes, M., etal. (2008) Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature 452: 340-343.
    • (2008) Nature , vol.452 , pp. 340-343
    • Desnues, C.1    Rodriguez-Brito, B.2    Rayhawk, S.3    Kelley, S.4    Tran, T.5    Haynes, M.6
  • 8
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot, X., and Falush, D. (2007) Inference of bacterial microevolution using multilocus sequence data. Genetics 175: 1251-1266.
    • (2007) Genetics , vol.175 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 9
    • 84865738882 scopus 로고    scopus 로고
    • Aquatic invertebrates of Cuatro Cienegas, Coahuila, Mexico and effects of fish on stromatolite invertebrate assemblages. MS Thesis. Flagstaff, AZ, USA: Northern Arizona University.
    • Dinger, E. (2001) Aquatic invertebrates of Cuatro Cienegas, Coahuila, Mexico and effects of fish on stromatolite invertebrate assemblages. MS Thesis. Flagstaff, AZ, USA: Northern Arizona University.
    • (2001)
    • Dinger, E.1
  • 10
    • 33644965921 scopus 로고    scopus 로고
    • Effects of phosphorus enrichment and grazing snails on modern stromatolitic microbial communities
    • Elser, J., Schampel, J.H., Garcia-Pichel, F., Wade, B.D., Souza, V., Eguiarte, L.E., etal. (2005) Effects of phosphorus enrichment and grazing snails on modern stromatolitic microbial communities. Freshw Biol 50: 1808-1825.
    • (2005) Freshw Biol , vol.50 , pp. 1808-1825
    • Elser, J.1    Schampel, J.H.2    Garcia-Pichel, F.3    Wade, B.D.4    Souza, V.5    Eguiarte, L.E.6
  • 12
    • 0028009902 scopus 로고
    • Phylogenetic interrelationships of round spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia and Planococcus
    • Farrow, J.A., Wallbanks, E.S., and Collins, M.D. (1994) Phylogenetic interrelationships of round spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia and Planococcus. Int J Syst Bacteriol 44: 74-82.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 74-82
    • Farrow, J.A.1    Wallbanks, E.S.2    Collins, M.D.3
  • 13
    • 33645038746 scopus 로고    scopus 로고
    • Genetic diversity and biogeography of haloalkaliphilic sulphuroxidizing bacteria belonging to the genus Thioalkalivibrio
    • Foti, M., Ma, S., Sorokin, D.Y., Rademaker, J.L.W., Kuenen, J.G., and Muyzer, G. (2006) Genetic diversity and biogeography of haloalkaliphilic sulphuroxidizing bacteria belonging to the genus Thioalkalivibrio. FEMS Microbiol Ecol 56: 95-101.
    • (2006) FEMS Microbiol Ecol , vol.56 , pp. 95-101
    • Foti, M.1    Ma, S.2    Sorokin, D.Y.3    Rademaker, J.L.W.4    Kuenen, J.G.5    Muyzer, G.6
  • 14
    • 59849086092 scopus 로고    scopus 로고
    • The bacterial species challenge: making sense of genetic and ecological diversity
    • Fraser, C., Alm, E.J., Polz, M.F., Spratt, B.G., and Hanage, W.P. (2009) The bacterial species challenge: making sense of genetic and ecological diversity. Science 323: 741-746.
    • (2009) Science , vol.323 , pp. 741-746
    • Fraser, C.1    Alm, E.J.2    Polz, M.F.3    Spratt, B.G.4    Hanage, W.P.5
  • 17
    • 35948933458 scopus 로고    scopus 로고
    • The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection
    • Gray, N.D., Brown, A., Nelson, D.R., Pickup, R.W., Rowan, A.K., and Head, I.M. (2007) The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection. ISME J 1: 596-605.
    • (2007) ISME J , vol.1 , pp. 596-605
    • Gray, N.D.1    Brown, A.2    Nelson, D.R.3    Pickup, R.W.4    Rowan, A.K.5    Head, I.M.6
  • 18
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., and Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 19
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 21
    • 0033664744 scopus 로고    scopus 로고
    • LIAN 3.0: detecting linkage disequilibrium in multilocus data
    • Haubold, B., and Hudson, R. (2000) LIAN 3.0: detecting linkage disequilibrium in multilocus data. Bioinformatics 16: 847-848.
    • (2000) Bioinformatics , vol.16 , pp. 847-848
    • Haubold, B.1    Hudson, R.2
  • 22
  • 24
    • 44449178480 scopus 로고    scopus 로고
    • Resource partitioning and sympatric differentiation among closely related bacterioplankton
    • Hunt, D., David, L.A., Gevers, D., Preheim, S.P., Alm, E.J., and Polz, M.F. (2008) Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085.
    • (2008) Science , vol.320 , pp. 1081-1085
    • Hunt, D.1    David, L.A.2    Gevers, D.3    Preheim, S.P.4    Alm, E.J.5    Polz, M.F.6
  • 25
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson, D.H., and Bryant, D. (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 26
    • 16844368586 scopus 로고    scopus 로고
    • Exiguobacterium aestuarii sp. nov. and Exiguobacterium marinum sp. nov. isolated from tidal flat of the Yellow Sea in Korea
    • Kim, I., Lee, M., Jung, S., Song, J.J., Oh, T., and Yoon, J. (2005) Exiguobacterium aestuarii sp. nov. and Exiguobacterium marinum sp. nov. isolated from tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 55: 885-889.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 885-889
    • Kim, I.1    Lee, M.2    Jung, S.3    Song, J.J.4    Oh, T.5    Yoon, J.6
  • 27
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt, E., and Goodfellow, M. (eds). Chichester, UK: Wiley
    • Lane, D.J. (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt, E., and Goodfellow, M. (eds). Chichester, UK: Wiley, pp. 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 28
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree of Life v2: online annotation and display of phylogenetic trees made easy
    • Letunic, I., and Bork, P. (2011) Interactive Tree of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39: W475-W478.
    • (2011) Nucleic Acids Res , vol.39
    • Letunic, I.1    Bork, P.2
  • 29
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylo-genetic method for comparing microbial communities
    • Lozupone, C., and Knight, R. (2005) UniFrac: a new phylo-genetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 30
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone, C., Hamady, M., and Knight, R. (2006) UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7: 371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 31
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • Martin, A.P. (2002) Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-3682.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 32
    • 84865738883 scopus 로고
    • Environments of the Bolson of Cuatro Cienegas, Coahuila, Mexico, with special reference to the aquatic biota. University of Texas, El Paso. Science Series 2: 1-65.
    • Minckley, W.L. (1969) Environments of the Bolson of Cuatro Cienegas, Coahuila, Mexico, with special reference to the aquatic biota. University of Texas, El Paso. Science Series 2: 1-65.
    • (1969)
    • Minckley, W.L.1
  • 33
    • 77950023784 scopus 로고    scopus 로고
    • Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations
    • Oakley, B.B., Carbonero, F., van der Gast, C.J., Hawkins, R.J., and Purdy, K.J. (2010) Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations. ISME J 4: 448-497.
    • (2010) ISME J , vol.4 , pp. 448-497
    • Oakley, B.B.1    Carbonero, F.2    van der Gast, C.J.3    Hawkins, R.J.4    Purdy, K.J.5
  • 34
    • 42949153686 scopus 로고    scopus 로고
    • Chapter 1.9: Life at high salt concentrations
    • 3rd edn., Dworkin, M. (ed.). Minneapolis, MN, USA: Springer
    • Oren, A. (2006) Chapter 1.9: Life at high salt concentrations. In Prokaryotes: A Handbook on the Biology of Bacteria, 3rd edn., Vol. 2. Dworkin, M. (ed.). Minneapolis, MN, USA: Springer, pp. 263-282.
    • (2006) Prokaryotes: A Handbook on the Biology of Bacteria , vol.2 , pp. 263-282
    • Oren, A.1
  • 36
    • 33751234806 scopus 로고    scopus 로고
    • Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
    • Polz, M.F., Hunt, D.E., Preheim, S.P., and Weinreich, D.W. (2006) Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Philos Trans R Soc Lond B Biol Sci 361: 2009-2021.
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 2009-2021
    • Polz, M.F.1    Hunt, D.E.2    Preheim, S.P.3    Weinreich, D.W.4
  • 37
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: phylogenetic model averaging
    • Posada, D. (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 38
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J.K., Stephens, M., and Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 39
    • 84865738884 scopus 로고    scopus 로고
    • Exiguobacterium aquaticum sp. nov., a new member of thegenus Exiguobacterium
    • doi:10.1099/ijs.0.035790-0. Epub ahead of print.
    • Raichand, R., Pareek, S., Singh, N.K., and Mayilraj, S. (2011) Exiguobacterium aquaticum sp. nov., a new member of thegenus Exiguobacterium. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.035790-0. Epub ahead of print.
    • (2011) Int J Syst Evol Microbiol
    • Raichand, R.1    Pareek, S.2    Singh, N.K.3    Mayilraj, S.4
  • 40
    • 33748299372 scopus 로고    scopus 로고
    • Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov
    • Rodrigues, D.F., Goris, J., Vishnivetskaya, T., Gilichinsky, D., Thomashow, M.F., and Tiedje, J.M. (2006) Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Extremophiles 10: 285-294.
    • (2006) Extremophiles , vol.10 , pp. 285-294
    • Rodrigues, D.F.1    Goris, J.2    Vishnivetskaya, T.3    Gilichinsky, D.4    Thomashow, M.F.5    Tiedje, J.M.6
  • 42
    • 27644597469 scopus 로고    scopus 로고
    • Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at 'Evolution Canyons' I and II, Israel
    • Sikorski, J., and Nevo, E. (2005) Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at 'Evolution Canyons' I and II, Israel. Proc Natl Acad Sci USA 102: 15924-15929.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 15924-15929
    • Sikorski, J.1    Nevo, E.2
  • 44
    • 67349173563 scopus 로고    scopus 로고
    • The Exiguobacterium genus: biodiversity and biogeography
    • Vishnivetskaya, T.A., Kathariou, S., and Tiedje, J.M. (2009) The Exiguobacterium genus: biodiversity and biogeography. Extremophiles 13: 541-555.
    • (2009) Extremophiles , vol.13 , pp. 541-555
    • Vishnivetskaya, T.A.1    Kathariou, S.2    Tiedje, J.M.3
  • 45
    • 40149090779 scopus 로고    scopus 로고
    • Isolation by distance in the spore-forming soil bacterium Myxococcus xanthus
    • Vos, M., and Velicer, G.J. (2008) Isolation by distance in the spore-forming soil bacterium Myxococcus xanthus. Curr Biol 18: 386-391.
    • (2008) Curr Biol , vol.18 , pp. 386-391
    • Vos, M.1    Velicer, G.J.2
  • 46
    • 33751226606 scopus 로고    scopus 로고
    • Allopatric origins of microbial species
    • Whitaker, R.J. (2006) Allopatric origins of microbial species. Philos Trans R Soc Lond B Biol Sci 361: 1975-1984.
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 1975-1984
    • Whitaker, R.J.1
  • 47
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic archaea
    • Whitaker, R.J., Grogan, D.W., and Taylor, J.W. (2003) Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301: 976-978.
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.