메뉴 건너뛰기




Volumn 13, Issue 4, 2014, Pages 2019-2027

RNA- and antibody-based profiling of the human proteome with focus on chromosome 19

Author keywords

antibodies; chromosome 19; Human Protein Atlas; Human Proteome Project; immunofluorescence; immunohistochemistry; RNA deep sequencing; tissue profiling; transcriptomics

Indexed keywords

ANTIBODY; PROTEOME; RNA; MESSENGER RNA; TRANSCRIPTOME;

EID: 84898766939     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr401156g     Document Type: Article
Times cited : (7)

References (27)
  • 1
    • 84863229647 scopus 로고    scopus 로고
    • The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome
    • Paik, Y. K. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome Nat. Biotechnol. 2012, 30, 221-223
    • (2012) Nat. Biotechnol. , vol.30 , pp. 221-223
    • Paik, Y.K.1
  • 2
    • 84874066401 scopus 로고    scopus 로고
    • A first step toward completion of a genome-wide characterization of the human proteome
    • Marko-Varga, G.; Omenn, G. S.; Paik, Y. K.; Hancock, W. S. A first step toward completion of a genome-wide characterization of the human proteome J. Proteome Res. 2013, 12, 1-5
    • (2013) J. Proteome Res. , vol.12 , pp. 1-5
    • Marko-Varga, G.1    Omenn, G.S.2    Paik, Y.K.3    Hancock, W.S.4
  • 3
    • 79960179572 scopus 로고    scopus 로고
    • The human proteome project: Current state and future direction
    • Legrain, P. The human proteome project: Current state and future direction Mol. Cell. Proteomics 2011, 10, M111.009993
    • (2011) Mol. Cell. Proteomics , vol.10 , pp. 111009993
    • Legrain, P.1
  • 4
    • 84874083265 scopus 로고    scopus 로고
    • NeXtProt: Organizing protein knowledge in the context of human proteome projects
    • Gaudet, P. neXtProt: organizing protein knowledge in the context of human proteome projects J. Proteome Res. 2013, 12, 293-298
    • (2013) J. Proteome Res. , vol.12 , pp. 293-298
    • Gaudet, P.1
  • 5
    • 84862187489 scopus 로고    scopus 로고
    • NeXtProt: A knowledge platform for human proteins
    • Lane, L. neXtProt: a knowledge platform for human proteins Nucleic Acids Res. 2012, 40, D76-D83
    • (2012) Nucleic Acids Res. , vol.40
    • Lane, L.1
  • 6
    • 84874074018 scopus 로고    scopus 로고
    • The biology/disease-driven human proteome project (B/D-HPP): Enabling protein research for the life sciences community
    • Aebersold, R. The biology/disease-driven human proteome project (B/D-HPP): enabling protein research for the life sciences community J. Proteome Res. 2013, 12, 23-27
    • (2013) J. Proteome Res. , vol.12 , pp. 23-27
    • Aebersold, R.1
  • 7
    • 29244477844 scopus 로고    scopus 로고
    • A human protein atlas for normal and cancer tissues based on antibody proteomics
    • Uhlen, M. A human protein atlas for normal and cancer tissues based on antibody proteomics Mol. Cell. Proteomics 2005, 4, 1920-1932
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1920-1932
    • Uhlen, M.1
  • 8
    • 84879327718 scopus 로고    scopus 로고
    • Contribution of antibody-based protein profiling to the human Chromosome-centric Proteome Project (C-HPP)
    • Fagerberg, L. Contribution of antibody-based protein profiling to the human Chromosome-centric Proteome Project (C-HPP) J. Proteome Res. 2013, 12, 2439-2448
    • (2013) J. Proteome Res. , vol.12 , pp. 2439-2448
    • Fagerberg, L.1
  • 9
    • 84893276590 scopus 로고    scopus 로고
    • Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics
    • Fagerberg, L. Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics Mol. Cell. Proteomics 2013, 13, 397-406
    • (2013) Mol. Cell. Proteomics , vol.13 , pp. 397-406
    • Fagerberg, L.1
  • 10
    • 78650642557 scopus 로고    scopus 로고
    • Defining the transcriptome and proteome in three functionally different human cell lines
    • Lundberg, E. Defining the transcriptome and proteome in three functionally different human cell lines Mol. Syst. Biol. 2010, 6, 450
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 450
    • Lundberg, E.1
  • 12
    • 57149110826 scopus 로고    scopus 로고
    • The Human Protein Atlas - A tool for pathology
    • Ponten, F.; Jirstrom, K.; Uhlen, M. The Human Protein Atlas - a tool for pathology J. Pathol. 2008, 216, 387-393
    • (2008) J. Pathol. , vol.216 , pp. 387-393
    • Ponten, F.1    Jirstrom, K.2    Uhlen, M.3
  • 13
    • 77649254440 scopus 로고    scopus 로고
    • The impact of tissue fixatives on morphology and antibody-based protein profiling in tissues and cells
    • Paavilainen, L. The impact of tissue fixatives on morphology and antibody-based protein profiling in tissues and cells J. Histochem. Cytochem. 2010, 58, 237-246
    • (2010) J. Histochem. Cytochem. , vol.58 , pp. 237-246
    • Paavilainen, L.1
  • 14
    • 42949095911 scopus 로고    scopus 로고
    • BAC TransgeneOmics: A high-throughput method for exploration of protein function in mammals
    • Poser, I. BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals Nat. Methods 2008, 5, 409-415
    • (2008) Nat. Methods , vol.5 , pp. 409-415
    • Poser, I.1
  • 15
    • 84875701652 scopus 로고    scopus 로고
    • Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells
    • Stadler, C. Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells Nat. Methods 2013, 10, 315-323
    • (2013) Nat. Methods , vol.10 , pp. 315-323
    • Stadler, C.1
  • 16
    • 77950516661 scopus 로고    scopus 로고
    • A single fixation protocol for proteome-wide immunofluorescence localization studies
    • Stadler, C.; Skogs, M.; Brismar, H.; Uhlen, M.; Lundberg, E. A single fixation protocol for proteome-wide immunofluorescence localization studies J. Proteomics 2010, 73, 1067-1078
    • (2010) J. Proteomics , vol.73 , pp. 1067-1078
    • Stadler, C.1    Skogs, M.2    Brismar, H.3    Uhlen, M.4    Lundberg, E.5
  • 18
    • 78650034777 scopus 로고    scopus 로고
    • Towards a knowledge-based Human Protein Atlas
    • Uhlen, M. Towards a knowledge-based Human Protein Atlas Nat. Biotechnol. 2010, 28, 1248-1250
    • (2010) Nat. Biotechnol. , vol.28 , pp. 1248-1250
    • Uhlen, M.1
  • 19
    • 41549148628 scopus 로고    scopus 로고
    • Toward a confocal subcellular atlas of the human proteome
    • Barbe, L. Toward a confocal subcellular atlas of the human proteome Mol. Cell. Proteomics 2008, 7, 499-508
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 499-508
    • Barbe, L.1
  • 20
    • 84891818310 scopus 로고    scopus 로고
    • Metrics for the human proteome project 2013-2014 and strategies for finding missing proteins
    • Lane, L. Metrics for the human proteome project 2013-2014 and strategies for finding missing proteins J. Proteome Res. 2014, 13, 15-20
    • (2014) J. Proteome Res. , vol.13 , pp. 15-20
    • Lane, L.1
  • 21
    • 84874724662 scopus 로고    scopus 로고
    • Update on activities at the Universal Protein Resource (UniProt) in 2013
    • Apweiler, R. Update on activities at the Universal Protein Resource (UniProt) in 2013 Nucleic Acids Res. 2013, 41, D43-D47
    • (2013) Nucleic Acids Res. , vol.41
    • Apweiler, R.1
  • 22
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: A hub of integrated protein data
    • UniProt Consortium, 10.1093/database/bar009
    • Magrane, M.; UniProt Consortium UniProt Knowledgebase: a hub of integrated protein data Database 2011, 10.1093/database/bar009
    • (2011) Database
    • Magrane, M.1
  • 23
    • 79961240625 scopus 로고    scopus 로고
    • Mapping the subcellular protein distribution in three human cell lines
    • Stadler, C. Mapping the subcellular protein distribution in three human cell lines J. Proteome Res. 2011, 10, 3766-3777
    • (2011) J. Proteome Res. , vol.10 , pp. 3766-3777
    • Stadler, C.1
  • 24
    • 84874045044 scopus 로고    scopus 로고
    • RNA deep sequencing as a tool for selection of cell lines for systematic subcellular localization of all human proteins
    • Danielsson, F. RNA deep sequencing as a tool for selection of cell lines for systematic subcellular localization of all human proteins J. Proteome Res. 2013, 12, 299-307
    • (2013) J. Proteome Res. , vol.12 , pp. 299-307
    • Danielsson, F.1
  • 25
    • 79958724665 scopus 로고    scopus 로고
    • RNA sequencing reveals two major classes of gene expression levels in metazoan cells
    • Hebenstreit, D. RNA sequencing reveals two major classes of gene expression levels in metazoan cells Mol. Syst. Biol. 2011, 7, 497
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 497
    • Hebenstreit, D.1
  • 26
    • 80855128254 scopus 로고    scopus 로고
    • Deep proteome and transcriptome mapping of a human cancer cell line
    • Nagaraj, N. Deep proteome and transcriptome mapping of a human cancer cell line Mol. Syst. Biol. 2011, 7, 548
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 548
    • Nagaraj, N.1
  • 27
    • 84858748188 scopus 로고    scopus 로고
    • Systematic validation of antibody binding and protein subcellular localization using siRNA and confocal microscopy
    • Stadler, C. Systematic validation of antibody binding and protein subcellular localization using siRNA and confocal microscopy J. Proteomics 2012, 75, 2236-2251
    • (2012) J. Proteomics , vol.75 , pp. 2236-2251
    • Stadler, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.