메뉴 건너뛰기




Volumn 9, Issue 4, 2014, Pages

Identification and comparative analysis of the tegillarca granosa haemocytes MicroRNA transcriptome in response to Cd using a deep sequencing approach

Author keywords

[No Author keywords available]

Indexed keywords

CADMIUM; MICRORNA; MICRORNA 10A 5P; MICRORNA 184B; MICRORNA 21; MICRORNA 2A; MICRORNA 8; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 84898652911     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0093619     Document Type: Article
Times cited : (26)

References (47)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP (2004) MicroRNAs: Genomics, Biogenesis, Mechanism, and Function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 84864431377 scopus 로고    scopus 로고
    • Environmental impacts of heavy metals (Co, Cu, Pb, Zn) in surficial sediments of estuary in Daliao River and Yingkou Bay (northeast China):Concentration level and chemical fraction
    • Wu Z, He M, Lin C (2012) Environmental impacts of heavy metals (Co, Cu, Pb, Zn) in surficial sediments of estuary in Daliao River and Yingkou Bay (northeast China):Concentration level and chemical fraction. Environ Earth Sci 66: 2417-2430.
    • (2012) Environ Earth Sci , vol.66 , pp. 2417-2430
    • Wu, Z.1    He, M.2    Lin, C.3
  • 4
    • 84886088070 scopus 로고    scopus 로고
    • Heavy metal pollution in coastal areas of South China: A review
    • Wang SL, Xu XR, Sun YX, Liu JL, Li HB (2013) Heavy metal pollution in coastal areas of South China: A review. Mar Pollut Bull 76: 7-15.
    • (2013) Mar Pollut Bull , vol.76 , pp. 7-15
    • Wang, S.L.1    Xu, X.R.2    Sun, Y.X.3    Liu, J.L.4    Li, H.B.5
  • 6
    • 67649173027 scopus 로고    scopus 로고
    • The role of microRNAs in copper and cadmium homeostasis
    • Ding Y-F, Zhu C (2009) The role of microRNAs in copper and cadmium homeostasis. Biochem Biophys Res Commun 386: 6-10.
    • (2009) Biochem Biophys Res Commun , vol.386 , pp. 6-10
    • Ding, Y.-F.1    Zhu, C.2
  • 8
    • 84866715519 scopus 로고    scopus 로고
    • Genome-wide identification of Brassica napus microRNAs and their targets in response to cadmium
    • Zhou ZS, Song JB, Yang ZM (2012) Genome-wide identification of Brassica napus microRNAs and their targets in response to cadmium. J Exp Bot 63: 4597-4613.
    • (2012) J Exp Bot , vol.63 , pp. 4597-4613
    • Zhou, Z.S.1    Song, J.B.2    Yang, Z.M.3
  • 9
    • 83255185090 scopus 로고    scopus 로고
    • Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal
    • Zhou ZS, Zeng HQ, Liu ZP, Yang ZM (2012) Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal. Plant Cell Environ 35: 86-99.
    • (2012) Plant Cell Environ , vol.35 , pp. 86-99
    • Zhou, Z.S.1    Zeng, H.Q.2    Liu, Z.P.3    Yang, Z.M.4
  • 11
    • 29744445150 scopus 로고    scopus 로고
    • Acute thermal stress and various heavy metals induce tissue-specific pro- or anti-apoptotic events via the p38-MAPK signal transduction pathway in Mytilus galloprovincialis (Lam.)
    • DOI 10.1242/jeb.01924
    • Kefaloyianni E, Gourgou E, Ferle V, Kotsakis E, Gaitanaki C, et al. (2005) Acute thermal stress and various heavy metals induce tissue-specific pro-or anti-apoptotic events via the p38-MAPK signal transduction pathway in Mytilus galloprovincialis (Lam.).J Exp Biol 208: 4427-4436. (Pubitemid 43028106)
    • (2005) Journal of Experimental Biology , vol.208 , Issue.23 , pp. 4427-4436
    • Kefaloyianni, E.1    Gourgou, E.2    Ferle, V.3    Kotsakis, E.4    Gaitanaki, C.5    Beis, I.6
  • 14
    • 84869210275 scopus 로고    scopus 로고
    • Identification of microRNAs from Eugenia uniflora by high-throughput sequencing and bioinformatics analysis
    • Guzman F, Almerão MP, Körbes AP, Loss-Morais G, Margis R (2012) Identification of microRNAs from Eugenia uniflora by high-throughput sequencing and bioinformatics analysis. PLoS ONE 7: e49811.
    • (2012) PLoS ONE , vol.7
    • Guzman, F.1    Almerão, M.P.2    Körbes, A.P.3    Loss-Morais, G.4    Margis, R.5
  • 15
    • 84863219439 scopus 로고    scopus 로고
    • Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing
    • Li C, Feng W, Qiu L, Xia C, Su X, et al. (2012) Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing. Fish Shellfish Immunol 33: 436-441.
    • (2012) Fish Shellfish Immunol , vol.33 , pp. 436-441
    • Li, C.1    Feng, W.2    Qiu, L.3    Xia, C.4    Su, X.5
  • 16
    • 84892898694 scopus 로고    scopus 로고
    • Identification and Characterization of MicroRNAs in Pearl Oyster Pinctada martensii by Solexa Deep Sequencing
    • Jiao Y, Zheng Z, Du X, Wang Q, Huang R, et al. (2013) Identification and Characterization of MicroRNAs in Pearl Oyster Pinctada martensii by Solexa Deep Sequencing. Mar Biotechnol 16: 54-62.
    • (2013) Mar Biotechnol , vol.16 , pp. 54-62
    • Jiao, Y.1    Zheng, Z.2    Du, X.3    Wang, Q.4    Huang, R.5
  • 17
    • 79955727264 scopus 로고    scopus 로고
    • Deep sequencing of organ-and stage-specific microRNAs in the evolutionarily basal insect Blattella germanica (L.) (Dictyoptera, Blattellidae)
    • Cristino AS, Tanaka ED, Rubio M, Piulachs M-D, Belles X (2011) Deep sequencing of organ-and stage-specific microRNAs in the evolutionarily basal insect Blattella germanica (L.) (Dictyoptera, Blattellidae). PloS ONE 6: e19350.
    • (2011) PloS ONE , vol.6
    • Cristino, A.S.1    Tanaka, E.D.2    Rubio, M.3    Piulachs, M.-D.4    Belles, X.5
  • 18
    • 67649885497 scopus 로고    scopus 로고
    • Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust
    • Wei Y, Chen S, Yang P, Ma Z, Kang L (2009) Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. Genome Biol 10: R6.
    • (2009) Genome Biol , vol.10
    • Wei, Y.1    Chen, S.2    Yang, P.3    Ma, Z.4    Kang, L.5
  • 19
    • 77949470329 scopus 로고    scopus 로고
    • Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    • Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR (2010) Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus. BMC Genomics 11: 119.
    • (2010) BMC Genomics , vol.11 , pp. 119
    • Skalsky, R.L.1    Vanlandingham, D.L.2    Scholle, F.3    Higgs, S.4    Cullen, B.R.5
  • 20
    • 77955375546 scopus 로고    scopus 로고
    • Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)
    • Korir NK, Song C, Chen W, Zhang C, Yu H, et al. (2010) Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata). BMC Genomics 11: 431.
    • (2010) BMC Genomics , vol.11 , pp. 431
    • Korir, N.K.1    Song, C.2    Chen, W.3    Zhang, C.4    Yu, H.5
  • 21
    • 79956081784 scopus 로고    scopus 로고
    • High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs
    • Martińez G, Forment J, Llave C, Pallás V, Gómez G (2011) High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs. PLoS One 6: e19523.
    • (2011) PLoS One , vol.6
    • Martińez, G.1    Forment, J.2    Llave, C.3    Pallás, V.4    Gómez, G.5
  • 22
    • 80051564048 scopus 로고    scopus 로고
    • Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase
    • Wang C, Wang X, Kibet NK, Song C, Zhang C, et al. (2011) Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase. Physiol Plant 143: 64-81.
    • (2011) Physiol Plant , vol.143 , pp. 64-81
    • Wang, C.1    Wang, X.2    Kibet, N.K.3    Song, C.4    Zhang, C.5
  • 23
    • 4043171462 scopus 로고    scopus 로고
    • Upstream and downstream of mTOR
    • DOI 10.1101/gad.1212704
    • Hay N, Sonenberg N (2004) Upstream and downstream of mTOR. Genes Dev 18: 1926-1945. (Pubitemid 39071573)
    • (2004) Genes and Development , vol.18 , Issue.16 , pp. 1926-1945
    • Hay, N.1    Sonenberg, N.2
  • 25
    • 80052516552 scopus 로고    scopus 로고
    • Reduced miR-100 expression in cervical cancer and precursors and its carcinogenic effect through targeting PLK1 protein
    • Li BH, Zhou JS, Ye F, Cheng XD, Zhou CY, et al. (2011) Reduced miR-100 expression in cervical cancer and precursors and its carcinogenic effect through targeting PLK1 protein. Eur J Cancer 47: 2166-2174.
    • (2011) Eur J Cancer , vol.47 , pp. 2166-2174
    • Li, B.H.1    Zhou, J.S.2    Ye, F.3    Cheng, X.D.4    Zhou, C.Y.5
  • 27
    • 78651102563 scopus 로고    scopus 로고
    • Localized expression pattern of miR-184 in Drosophila
    • Li P, Peng J, Hu J, Xu Z, Xie W, et al. (2011) Localized expression pattern of miR-184 in Drosophila. Mol Biol Rep 38: 355-358.
    • (2011) Mol Biol Rep , vol.38 , pp. 355-358
    • Li, P.1    Peng, J.2    Hu, J.3    Xu, Z.4    Xie, W.5
  • 28
    • 84872155023 scopus 로고    scopus 로고
    • Diverse functions of miR-125 family in different cell contexts
    • Sun Y-M, Lin K-Y, Chen Y-Q (2013) Diverse functions of miR-125 family in different cell contexts. J Hematol Oncol 6: 6.
    • (2013) J Hematol Oncol , vol.6 , pp. 6
    • Sun, Y.-M.1    Lin, K.-Y.2    Chen, Y.-Q.3
  • 29
    • 33749242966 scopus 로고    scopus 로고
    • The bantam MicroRNA Is a Target of the Hippo Tumor-Suppressor Pathway
    • DOI 10.1016/j.cub.2006.08.057, PII S0960982206021166
    • Nolo R, Morrison CM, Tao C, Zhang X, Halder G (2006) The bantam microRNA is a target of the hippo tumor-suppressor pathway. Curr Biol 16: 1895-1904. (Pubitemid 44486764)
    • (2006) Current Biology , vol.16 , Issue.19 , pp. 1895-1904
    • Nolo, R.1    Morrison, C.M.2    Tao, C.3    Zhang, X.4    Halder, G.5
  • 31
    • 79956122723 scopus 로고    scopus 로고
    • Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family
    • Schulte LN, Eulalio A, Mollenkopf H-J, Reinhardt R, Vogel J (2011) Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family. EMBO J 30: 1977-1989.
    • (2011) EMBO J , vol.30 , pp. 1977-1989
    • Schulte, L.N.1    Eulalio, A.2    Mollenkopf, H.-J.3    Reinhardt, R.4    Vogel, J.5
  • 32
    • 84860779005 scopus 로고    scopus 로고
    • Evolution and function of the extended miR-2 microRNA family
    • Marco A, Hooks K, Griffiths-Jones S (2012) Evolution and function of the extended miR-2 microRNA family. RNA Biol 9: 242-248.
    • (2012) RNA Biol , vol.9 , pp. 242-248
    • Marco, A.1    Hooks, K.2    Griffiths-Jones, S.3
  • 33
    • 84884562308 scopus 로고    scopus 로고
    • Therapeutic action of fluoxetine is associated with a reduction in prefrontal cortical miR-1971 expression levels in a mouse model of posttraumatic stress disorder
    • Schmidt U, Herrmann L, Hagl K, Novak B, Huber C, et al. (2013) Therapeutic action of fluoxetine is associated with a reduction in prefrontal cortical miR-1971 expression levels in a mouse model of posttraumatic stress disorder. Front Psychiatry 4: 66.
    • (2013) Front Psychiatry , vol.4 , pp. 66
    • Schmidt, U.1    Herrmann, L.2    Hagl, K.3    Novak, B.4    Huber, C.5
  • 34
    • 84873482502 scopus 로고    scopus 로고
    • Differentially expressed microRNAs at different stages of atherosclerosis in ApoE-deficient mice
    • Zhen S, Chen Y, Zi-lun L, Yuan T, Wen L, et al. (2013) Differentially expressed microRNAs at different stages of atherosclerosis in ApoE-deficient mice. Chin Med J (Engl) 126: 515-520.
    • (2013) Chin Med J (Engl) , vol.126 , pp. 515-520
    • Zhen, S.1    Chen, Y.2    Zi-Lun, L.3    Yuan, T.4    Wen, L.5
  • 35
    • 74249095917 scopus 로고    scopus 로고
    • MiR-10 in development and cancer
    • Lund AH (2009) miR-10 in development and cancer. Cell Death Differ 17: 209-214.
    • (2009) Cell Death Differ , vol.17 , pp. 209-214
    • Lund, A.H.1
  • 36
    • 84863611076 scopus 로고    scopus 로고
    • Molecular insights into the function of RING finger (RNF)-containing proteins hRNF8 and hRNF168 in Ubc13/Mms2-dependent ubiquitylation
    • Campbell SJ, Edwards RA, Leung CC, Neculai D, Hodge CD, et al. (2012) Molecular insights into the function of RING finger (RNF)-containing proteins hRNF8 and hRNF168 in Ubc13/Mms2-dependent ubiquitylation. J Biol Chem 287: 23900-23910.
    • (2012) J Biol Chem , vol.287 , pp. 23900-23910
    • Campbell, S.J.1    Edwards, R.A.2    Leung, C.C.3    Neculai, D.4    Hodge, C.D.5
  • 37
    • 83555168176 scopus 로고    scopus 로고
    • Roles of ubiquitin signaling in transcription regulation
    • Hammond-Martel I, Yu H, Affar el B (2012) Roles of ubiquitin signaling in transcription regulation. Cell Signal 24: 410-421.
    • (2012) Cell Signal , vol.24 , pp. 410-421
    • Hammond-Martel, I.1    Yu, H.2    Affar El, B.3
  • 38
    • 0346120020 scopus 로고    scopus 로고
    • Poplar Metal Tolerance Protein 1 Confers Zinc Tolerance and Is an Oligomeric Vacuolar Zinc Transporter with an Essential Leucine Zipper Motif
    • DOI 10.1105/tpc.017541
    • Blaudez D, Kohler A, Martin F, Sanders D, Chalot M (2003) Poplar metal tolerance protein 1 confers zinc tolerance and is an oligomeric vacuolar zinc transporter with an essential leucine zipper motif. Plant Cell 15: 2911-2928. (Pubitemid 37546260)
    • (2003) Plant Cell , vol.15 , Issue.12 , pp. 2911-2928
    • Blaudez, D.1    Kohler, A.2    Martin, F.3    Sanders, D.4    Chalot, M.5
  • 40
    • 0033912163 scopus 로고    scopus 로고
    • Phytochelatins and their roles in heavy metal detoxification
    • Cobbett CS (2000) Phytochelatins and their roles in heavy metal detoxification. Plant Physiol 123: 825-832. (Pubitemid 30466835)
    • (2000) Plant Physiology , vol.123 , Issue.3 , pp. 825-832
    • Cobbett, C.S.1
  • 41
    • 0036111170 scopus 로고    scopus 로고
    • Cadmium stress induces production of thiol compounds and transcripts for enzymes involved in sulfur assimilation pathways in Arabidopsis
    • Harada E, Yamaguchi Y, Koizumi N, Hiroshi S (2002) Cadmium stress induces production of thiol compounds and transcripts for enzymes involved in sulfur assimilation pathways in Arabidopsis. J Plant Physiol 159: 445-448. (Pubitemid 34523093)
    • (2002) Journal of Plant Physiology , vol.159 , Issue.4 , pp. 445-448
    • Harada, E.1    Yamaguchi, Y.2    Koizumi, N.3    Hiroshi, S.4
  • 42
    • 36749090100 scopus 로고    scopus 로고
    • Interaction of heavy metals with the sulphur metabolism in angiosperms from an ecological point of view
    • DOI 10.1111/j.1365-3040.2007.01746.x
    • Ernst WHO, Krauss G-J, Verkleij JAC, Wesenberg D (2008) Interaction of heavy metals with the sulphur metabolism in angiosperms from an ecological point of view. Plant Cell Environ 31: 123-143. (Pubitemid 350212618)
    • (2008) Plant, Cell and Environment , vol.31 , Issue.1 , pp. 123-143
    • Ernst, W.H.O.1    Krauss, G.-J.2    Verkleij, J.A.C.3    Wesenberg, D.4
  • 43
    • 0033912163 scopus 로고    scopus 로고
    • Phytochelatins and their roles in heavy metal detoxification
    • Cobbett CS (2000) Phytochelatins and their roles in heavy metal detoxification. Plant Physiology 123: 825-832. (Pubitemid 30466835)
    • (2000) Plant Physiology , vol.123 , Issue.3 , pp. 825-832
    • Cobbett, C.S.1
  • 44
    • 77949311512 scopus 로고    scopus 로고
    • Phytochelatins: Peptides involved in heavy metal detoxification
    • Pal R, Rai JP (2010) Phytochelatins: peptides involved in heavy metal detoxification. Appl Biochem Biotechnol 160: 945-963.
    • (2010) Appl Biochem Biotechnol , vol.160 , pp. 945-963
    • Pal, R.1    Rai, J.P.2
  • 45
    • 0015104990 scopus 로고
    • Ultrastructural search for homologues of pancreatic-cells in the intestinal mucosa of the mollusc Buccinum undatum
    • Boquist L, Falkmer S, Mehrotra BK (1971) Ultrastructural search for homologues of pancreatic-cells in the intestinal mucosa of the mollusc Buccinum undatum. Gen Comp Endocrinol 17: 236-239.
    • (1971) Gen Comp Endocrinol , vol.17 , pp. 236-239
    • Boquist, L.1    Falkmer, S.2    Mehrotra, B.K.3
  • 46
    • 0017075737 scopus 로고
    • Prevention by zinc of cadmium-induced alyerationgs in pancreatic and hepatic functions
    • Merali Z, Singhal RL (1976) Prevention by zinc of cadmium-induced alyerationgs in pancreatic and hepatic functions. Br J Pharmacol 57: 573-579.
    • (1976) Br J Pharmacol , vol.57 , pp. 573-579
    • Merali, Z.1    Singhal, R.L.2
  • 47
    • 0037960155 scopus 로고    scopus 로고
    • Effects of cadmium on DNA-(Cytosine-5) methyltransferase activity and DNA methylation status during cadmium-induced cellular transformation
    • DOI 10.1016/S0014-4827(03)00062-4
    • Takiguchi M, Achanzar WE, Qu W, Li G, Waalkes MP (2003) Effects of cadmium on DNA-(Cytosine-5) methyltransferase activity and DNA methylation status during cadmium-induced cellular transformation. Exp Cell Res 286: 355-365. (Pubitemid 36566447)
    • (2003) Experimental Cell Research , vol.286 , Issue.2 , pp. 355-365
    • Takiguchi, M.1    Achanzar, W.E.2    Qu, W.3    Li, G.4    Waalkes, M.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.