메뉴 건너뛰기




Volumn 9, Issue 3, 2014, Pages

Racemization in reverse: Evidence that D-amino acid toxicity on Earth is controlled by bacteria with racemases

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; DEXTRO ALANINE; DEXTRO AMINO ACID; DEXTRO ASPARTIC ACID; DEXTRO GLUTAMIC ACID; LEUCINE; RACEMASE; AMINO ACID; ISOMERASE;

EID: 84898634899     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0092101     Document Type: Article
Times cited : (43)

References (41)
  • 1
    • 84974989159 scopus 로고
    • Racemization of amino acids in nature
    • Bada JL (1982) Racemization of amino acids in nature. Interdiscipl Sci Rev 7: 30-46.
    • (1982) Interdiscipl Sci Rev , vol.7 , pp. 30-46
    • Bada, J.L.1
  • 2
    • 0028194007 scopus 로고
    • Amino acid racemization dating of a 140 000 year old tephra-loess- palaeosol sequence on the Mamaku Plateau near Rotorua, New Zealand
    • Kimber RWL, Kennedy NM, Milnes AR (1994) Amino acid racemization dating of a 140000 year old tephra-loess-paleosol sequence on the Mamaku Plateau near Rotorua, New Zealand. Aust J Earth Sci 41: 19-26. (Pubitemid 24400669)
    • (1994) Australian Journal of Earth Sciences , vol.41 , Issue.1 , pp. 19-26
    • Kimber, R.W.L.1    Kennedy, N.M.2    Milnes, A.R.3
  • 6
    • 0016138379 scopus 로고
    • Peptidoglycans (mucopeptides): Structure, function, and variations
    • Rogers HJ (1974) Peptidoglycans (mucopeptides): structure, function, and variations. Ann NY Acad Sci 235: 29-51.
    • (1974) Ann NY Acad Sci , vol.235 , pp. 29-51
    • Rogers, H.J.1
  • 7
    • 0037350018 scopus 로고    scopus 로고
    • Microbial degradation of peptidoglycan in seawater
    • Nagata T, Meon B, Kirchman DL (2003) Microbial degradation of peptidoglycan in seawater. Limnol Oceanogr 48: 745-754. (Pubitemid 36364152)
    • (2003) Limnology and Oceanography , vol.48 , Issue.2 , pp. 745-754
    • Nagata, T.1    Meon, B.2    Kirchman, D.L.3
  • 9
    • 0348226971 scopus 로고    scopus 로고
    • Nitrogen biomarkers and their fate in soil
    • Amelung W (2003) Nitrogen biomarkers and their fate in soil. J Plant Nutr Soil Sc 166: 677-686.
    • (2003) J Plant Nutr Soil Sc , vol.166 , pp. 677-686
    • Amelung, W.1
  • 10
    • 0006974488 scopus 로고
    • Alanine enantiomeric ratio in the combined amino acid fraction in seawater
    • Bada JL, Hoopes EA (1979) Alanine enantiomeric ratio in the combined amino acid fraction in seawater. Nature 282: 822-823.
    • (1979) Nature , vol.282 , pp. 822-823
    • Bada, J.L.1    Hoopes, E.A.2
  • 11
    • 84986870160 scopus 로고
    • Dissolved amino acids in equatorial Pacific, Sargasso Sea, and Biscayne Bay
    • Lee C, Bada JL (1977) Dissolved amino acids in equatorial Pacific, Sargasso Sea, and Biscayne Bay. Limnol Oceanogr 22: 502-510.
    • (1977) Limnol Oceanogr , vol.22 , pp. 502-510
    • Lee, C.1    Bada, J.L.2
  • 12
    • 84971078873 scopus 로고
    • Racemization of amino acids in agricultural soils: An age effect?
    • Griffin CV, Kimber RWL (1988) Racemization of amino acids in agricultural soils: an age effect? Aust J Soil Res 26: 531-536.
    • (1988) Aust J Soil Res , vol.26 , pp. 531-536
    • Griffin, C.V.1    Kimber, R.W.L.2
  • 13
    • 33744803729 scopus 로고    scopus 로고
    • Amino acid biogeo- and stereochemistry in coastal Chilean sediments
    • DOI 10.1016/j.gca.2006.03.015, PII S0016703706001499
    • Lomstein BA, Jørgensen BB, Schubert CJ, Niggemann J (2006) Amino acid biogeo- and stereochemistry in coastal Chilean sediments. Geochim Cosmochim Ac 70: 2970-2989. (Pubitemid 43827383)
    • (2006) Geochimica et Cosmochimica Acta , vol.70 , Issue.12 , pp. 2970-2989
    • Lomstein, B.Aa.1    Jorgensen, B.B.2    Schubert, C.J.3    Niggemann, J.4
  • 15
    • 0032504067 scopus 로고    scopus 로고
    • Major bacterial contribution to marine dissolved organic nitrogen
    • DOI 10.1126/science.281.5374.231
    • McCarthy MD, Hedges JI, Benner R (1998) Major bacterial contribution to marine dissolved organic nitrogen. Science 281: 231-234. (Pubitemid 28334499)
    • (1998) Science , vol.281 , Issue.5374 , pp. 231-234
    • McCarthy, M.D.1    Hedges, J.I.2    Benner, R.3
  • 16
    • 0036491123 scopus 로고    scopus 로고
    • Aspartic acid racemization and age-depth relationships for organic carbon in Siberian permafrost
    • Brinton KLF, Tsapin AI, Gilichinsky D, McDonald GD (2002) Aspartic acid racemization and age-depth relationships for organic carbon in Siberian permafrost. Astrobiology 2: 77-82.
    • (2002) Astrobiology , vol.2 , pp. 77-82
    • Brinton, K.L.F.1    Tsapin, A.I.2    Gilichinsky, D.3    McDonald, G.D.4
  • 17
    • 0035213261 scopus 로고    scopus 로고
    • Origin and biogeochemical cycling of organic nitrogen in the Eastern Arctic ocean as evident from D- and L-amino acids
    • DOI 10.1016/S0016-7037(01)00688-3, PII S0016703701006883
    • Dittmar T, Fitznar HP, Kattner G (2001) Origin and biogeochemical cycling of organic nitrogen in the eastern Arctic Ocean as evident from D- and L-amino acids. Geochim Cosmochim Ac 65: 4103-4114. (Pubitemid 33122348)
    • (2001) Geochimica et Cosmochimica Acta , vol.65 , Issue.22 , pp. 4103-4114
    • Dittmar, T.1    Fitznar, H.P.2    Kattner, G.3
  • 18
    • 30344465050 scopus 로고    scopus 로고
    • Amino acids in grassland soils: Climatic effects on concentrations and chirality
    • DOI 10.1016/j.geoderma.2005.01.017, PII S0016706105000340
    • Amelung W, Zhang X, Flach KW (2006) Amino acids in grassland soils: Climatic effects on concentrations and chirality. Geoderma 130: 207-217. (Pubitemid 43061395)
    • (2006) Geoderma , vol.130 , Issue.3-4 , pp. 207-217
    • Amelung, W.1    Zhang, X.2    Flach, K.W.3
  • 21
    • 0032795593 scopus 로고    scopus 로고
    • Production of a new D-amino acid oxidase from the fungus Fusarium oxysporum
    • Gabler M, Fischer L (1999) Production of a new D-amino acid oxidase from the fungus Fusarium oxysporum. Appl Environ Microbiol 65: 3750-3753. (Pubitemid 29399017)
    • (1999) Applied and Environmental Microbiology , vol.65 , Issue.8 , pp. 3750-3753
    • Gabler, M.1    Fischer, L.2
  • 22
    • 0014104819 scopus 로고
    • The utilization of D-amino acids by yeasts
    • LaRue TA, Spencer JFT (1967) The utilization of D-amino acids by yeasts. Can J Microbiol 13: 777-788.
    • (1967) Can J Microbiol , vol.13 , pp. 777-788
    • LaRue, T.A.1    Spencer, J.F.T.2
  • 23
    • 28844451809 scopus 로고    scopus 로고
    • Physiological role of D-aspartate oxidase in the assimilation and detoxification of D-aspartate in the yeast Cryptococcus humicola
    • DOI 10.1002/yea.1303
    • Takahashi S, Kakuichi T, Fujii K, Kera Y, Yamada RH (2005) Physiological role of D-aspartate oxidase in the assimilation and detoxification of D-aspartate in the yeast Cryptococcus humicola. Yeast 22: 1203-1212. (Pubitemid 41762883)
    • (2005) Yeast , vol.22 , Issue.15 , pp. 1203-1212
    • Takahashi, S.1    Kakuichi, T.2    Fujii, K.3    Kera, Y.4    Yamada, R.-H.5
  • 24
    • 33644541445 scopus 로고    scopus 로고
    • Physiological role of D-amino acid-N-acetyltransferase of Saccharomyces cerevisiae: Detoxification of D-amino acids
    • DOI 10.1007/s00203-005-0060-x
    • Yow GY, Uo T, Yoshimura T, Esaki N (2006) Physiological role of D-amino acid N-acetyltransferase of Saccharomyces cerevisiae: detoxification of D-amino acids. Arch Microbiol 185: 39-46. (Pubitemid 43293203)
    • (2006) Archives of Microbiology , vol.185 , Issue.1 , pp. 39-46
    • Yow, G.-Y.1    Uo, T.2    Yoshimura, T.3    Esaki, N.4
  • 25
    • 0034734851 scopus 로고    scopus 로고
    • Physiological role of the D-amino acid oxidase gene, DAO1, in carbon and nitrogen metabolism in the methylotrophic yeast Candida boidinii
    • Yurimoto H, Hasegawa T, Sakai Y, Kato N (2000) Physiological role of the D-amino acid oxidase gene, DAO1, in carbon and nitrogen metabolism in the methylotrophic yeast Candida boidinii. Yeast 16: 1217-1227.
    • (2000) Yeast , vol.16 , pp. 1217-1227
    • Yurimoto, H.1    Hasegawa, T.2    Sakai, Y.3    Kato, N.4
  • 26
    • 17744387492 scopus 로고
    • D-amino acids in soils. I. Uptake and metabolism by seedling maize and ryegrass
    • Aldag RW, Young JL (1970) D-amino acids in soils. I. uptake and metabolism by seedling maize and ryegrass. Agron J 62: 184-189.
    • (1970) Agron J , vol.62 , pp. 184-189
    • Aldag, R.W.1    Young, J.L.2
  • 27
    • 49249131287 scopus 로고    scopus 로고
    • Capacities and constraints of amino acid utilization in Arabidopsis
    • Forsum O, Svennerstam H, Ganeteg U, Näsholm T (2008) Capacities and constraints of amino acid utilization in Arabidopsis. New Phytol 179: 1058-1069.
    • (2008) New Phytol , vol.179 , pp. 1058-1069
    • Forsum, O.1    Svennerstam, H.2    Ganeteg, U.3    Näsholm, T.4
  • 28
    • 80655149592 scopus 로고    scopus 로고
    • Nutritional value of D-amino acids, D-peptides, and amino acid derivatives in mice
    • Friedman M, Levin CE (2012) Nutritional value of D-amino acids, D-peptides, and amino acid derivatives in mice. Methods Mol Biol 794:337-353.
    • (2012) Methods Mol Biol , vol.794 , pp. 337-353
    • Friedman, M.1    Levin, C.E.2
  • 29
    • 13244269794 scopus 로고    scopus 로고
    • Markerless mutagenesis in Methanococcus maripaludis demonstrates roles for alanine dehydrogenase, alanine racemase, and alanine permease
    • DOI 10.1128/JB.187.3.972-979.2005
    • Moore BC, Leigh JA (2005) Markerless mutagenesis in Methanococcus maripaludis demonstrates roles for alanine dehydrogenase, alanine racemase, and alanine permease. J Bacteriol 187: 972-979. (Pubitemid 40189771)
    • (2005) Journal of Bacteriology , vol.187 , Issue.3 , pp. 972-979
    • Moore, B.C.1    Leigh, J.A.2
  • 30
    • 0035087095 scopus 로고    scopus 로고
    • Functional characterization of alanine racemase from Schizosaccharomyces pombe: A eucaryotic counterpart to bacterial alanine racemase
    • DOI 10.1128/JB.183.7.2226-2233.2001
    • Uo T, Yoshimura T, Tanaka N, Takegawa K, Esaki N (2001) Functional characterization of alanine racemase from Schizosaccharomyces pombe: a eucaryotic counterpart to bacterial alanine racemase. J Bacteriol 183: 2226-2233. (Pubitemid 32240391)
    • (2001) Journal of Bacteriology , vol.183 , Issue.7 , pp. 2226-2233
    • Uo, T.1    Yoshimura, T.2    Tanaka, N.3    Takegawa, K.4    Esaki, N.5
  • 31
    • 0020569964 scopus 로고
    • Two alanine racemase genes in Salmonella typhimurium that differ in structure and function
    • Wasserman SA, Walsh CT, Botstein D (1983) Two alanine racemase genes in Salmonella typhimurium that differ in structure and function. J Bacteriol 153: 1439-1450. (Pubitemid 13127833)
    • (1983) Journal of Bacteriology , vol.153 , Issue.3 , pp. 1439-1450
    • Wasserman, S.A.1    Walsh, C.T.2    Botstein, D.3
  • 32
    • 0041876085 scopus 로고    scopus 로고
    • Amino acid racemases: Functions and mechanisms
    • DOI 10.1016/S1389-1723(03)90111-3
    • Yoshimura T, Esaki N (2003) Amino acid racemases: Functions and mechanisms. J Biosci Bioeng 96: 103-109. (Pubitemid 37088516)
    • (2003) Journal of Bioscience and Bioengineering , vol.96 , Issue.2 , pp. 103-109
    • Yoshimura, T.1    Esaki, N.2
  • 33
    • 0028814681 scopus 로고
    • Staphylococcus haemolyticus contains two D-glutamic acid biosynthetic activities, a glutamate racemase and a D-amino acid transaminase
    • Pucci MJ, Thanassi JA, Ho HT, Falk PJ, Dougherty TJ (1995) Staphylococcus haemolyticus contains two D-glutamic acid biosynthetic activities, a glutamate racemase and a D-amino acid transaminase. J Bacteriol 177: 336-342.
    • (1995) J Bacteriol , vol.177 , pp. 336-342
    • Pucci, M.J.1    Thanassi, J.A.2    Ho, H.T.3    Falk, P.J.4    Dougherty, T.J.5
  • 34
    • 33751403057 scopus 로고    scopus 로고
    • Microflora of extreme arid Atacama Desert soils
    • DOI 10.1016/j.soilbio.2006.09.020, PII S003807170600438X
    • Lester ED, Satomi M, Ponce A (2007) Microflora of extreme arid Atacama Desert soils. Soil Biol Biochem 39: 704-708. (Pubitemid 44820302)
    • (2007) Soil Biology and Biochemistry , vol.39 , Issue.2 , pp. 704-708
    • Lester, E.D.1    Satomi, M.2    Ponce, A.3
  • 35
    • 0042145997 scopus 로고
    • Observations on the distribution of microorganisms in desert soil
    • Vollmer AT, Au F, Bamberg SA (1977) Observations on the distribution of microorganisms in desert soil. Great Basin Nat 37: 81-86.
    • (1977) Great Basin Nat , vol.37 , pp. 81-86
    • Vollmer, A.T.1    Au, F.2    Bamberg, S.A.3
  • 36
    • 84859394059 scopus 로고    scopus 로고
    • In situ microbial detection in Mojave Desert soil using native fluorescence
    • Smith HD, Duncan AG, Neary PL, Lloyd CR, Anderson AJ, et al. (2012) In situ microbial detection in Mojave Desert soil using native fluorescence. Astrobiology 12: 247-257.
    • (2012) Astrobiology , vol.12 , pp. 247-257
    • Smith, H.D.1    Duncan, A.G.2    Neary, P.L.3    Lloyd, C.R.4    Anderson, A.J.5
  • 37
    • 0025768596 scopus 로고
    • Expression of D-amino acid oxidase in Rhodotorula gracilis under induction conditions: A biochemical and cytochemical study
    • Perotti ME, Pollegioni L, Pilone MS (1991) Expression of D-amino acid oxidase in Rhodotorula gracilis under induction conditions: a biochemical and cytochemical study. Eur J Cell Biol 55: 104-113.
    • (1991) Eur J Cell Biol , vol.55 , pp. 104-113
    • Perotti, M.E.1    Pollegioni, L.2    Pilone, M.S.3
  • 38
    • 0019960467 scopus 로고
    • Regulation of L-amino acid oxidase and of d-amino acid oxidase in Neurospora crassa
    • DOI 10.1007/BF00422908
    • Sikora L, Marzluf GA (1982) Regulation of L-amino acid oxidase and of D-amino acid oxidase in Neurospora crassa. Mol Gen Genet 186: 33-39. (Pubitemid 12059708)
    • (1982) Molecular and General Genetics , vol.186 , Issue.1 , pp. 33-39
    • Sikora, L.1    Marzluf, G.A.2
  • 39
    • 0000095709 scopus 로고
    • Induction of D-amino-acid oxidase by D-alanine in Rhodotorula gracilis grown in defined medium
    • Simonetta MP, Verga R, Fretta A, Hanozet GM (1989) Induction of D-amino-acid oxidase by D-alanine in Rhodotorula gracilis grown in defined medium. J Gen Microbiol 135: 593-600.
    • (1989) J Gen Microbiol , vol.135 , pp. 593-600
    • Simonetta, M.P.1    Verga, R.2    Fretta, A.3    Hanozet, G.M.4
  • 40
    • 0035291333 scopus 로고    scopus 로고
    • Characterization and high-level production of D-amino acid oxidase in Candida boidinii
    • DOI 10.1271/bbb.65.627
    • Yurimoto H, Hasegawa T, Sakai Y, Kato N (2001) Characterization and high-level production of D-amino acid oxidase in Candida boidinii. Biosci Biotechnol Biochem 65: 627-633. (Pubitemid 33615929)
    • (2001) Bioscience, Biotechnology and Biochemistry , vol.65 , Issue.3 , pp. 627-633
    • Yurimoto, H.1    Hasegawa, T.2    Sakai, Y.3    Kato, N.4
  • 41
    • 0028877964 scopus 로고
    • Determination of a-dialkylamino acids and their enantiomers in geological samples by high-performance liquid-chromatography after derivatization with a chiral adduct of o-phthaldialdehyde
    • Zhao MX, Bada JL (1995) Determination of a-dialkylamino acids and their enantiomers in geological samples by high-performance liquid-chromatography after derivatization with a chiral adduct of o-phthaldialdehyde. J Chromatogr 690: 55-63.
    • (1995) J Chromatogr , vol.690 , pp. 55-63
    • Zhao, M.X.1    Bada, J.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.