메뉴 건너뛰기




Volumn 14, Issue 3, 2014, Pages 508-518

Recovery of DNA barcodes from blackfly museum specimens (Diptera: Simuliidae) using primer sets that target a variety of sequence lengths

Author keywords

Blackflies; COI; DNA barcoding; Museum specimens; Simuliidae

Indexed keywords

DIPTERA; HEXAPODA; SIMULIIDAE;

EID: 84898540345     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12208     Document Type: Article
Times cited : (104)

References (52)
  • 1
    • 84898546480 scopus 로고    scopus 로고
    • World blackflies (Diptera: Simuliidae): a comprehensive revision of the taxonomic and geographical inventory. Available from 120 pp. Accessed 11 July 2013.
    • Adler PH, Crosskey RW (2013) World blackflies (Diptera: Simuliidae): a comprehensive revision of the taxonomic and geographical inventory. Available from http://entweb. clemson.edu/biomia/pdfs/blackflyinventory.pdf. 120 pp. Accessed 11 July 2013.
    • (2013)
    • Adler, P.H.1    Crosskey, R.W.2
  • 4
    • 79952276097 scopus 로고    scopus 로고
    • Building freshwater macroinvertebrates DNA-barcode libraries from reference collection material: formalin preservation vs specimen age
    • Baird DJ, Pascoe TJ, Zhou X, Hajibabaei M (2011) Building freshwater macroinvertebrates DNA-barcode libraries from reference collection material: formalin preservation vs specimen age. Journal of the North American Benthological Society, 30, 125-130.
    • (2011) Journal of the North American Benthological Society , vol.30 , pp. 125-130
    • Baird, D.J.1    Pascoe, T.J.2    Zhou, X.3    Hajibabaei, M.4
  • 5
    • 80051688857 scopus 로고    scopus 로고
    • Primers for identification of type and other archived specimens of Aphrodes leafhoppers (Hemiptera, Cicadellidae)
    • Bluemel JK, King RA, Virant-Doberlet M, Symondson WOC (2011) Primers for identification of type and other archived specimens of Aphrodes leafhoppers (Hemiptera, Cicadellidae). Molecular Ecology Resources, 11, 770-774.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 770-774
    • Bluemel, J.K.1    King, R.A.2    Virant-Doberlet, M.3    Symondson, W.O.C.4
  • 8
    • 38149114602 scopus 로고    scopus 로고
    • Global diversity of blackflies (Diptera: Simuliidae) in freshwater
    • Currie DC, Adler PH (2008) Global diversity of blackflies (Diptera: Simuliidae) in freshwater. Hydrobiologia, 595, 469-475.
    • (2008) Hydrobiologia , vol.595 , pp. 469-475
    • Currie, D.C.1    Adler, P.H.2
  • 9
    • 0035059619 scopus 로고    scopus 로고
    • Factors affecting mitochondrial DNA quality from museum preserved Drosophila simulans
    • Dean MD, Ballard JWO (2001) Factors affecting mitochondrial DNA quality from museum preserved Drosophila simulans. Entomologia Experimentalis et Applicata, 98, 279-283.
    • (2001) Entomologia Experimentalis et Applicata , vol.98 , pp. 279-283
    • Dean, M.D.1    Ballard, J.W.O.2
  • 10
    • 0032013370 scopus 로고    scopus 로고
    • The Cooperative Group on Fogo Selvagem Research. 1998. Comparison of Blackflies species (Diptera: Simuliidae) on an Amerindian reservation with a high prevalence of fogo selvagem to neighbouring disease free sites in the state of Mato Grosso do Sul, Brazil
    • Eaton DP, Diaz LA, Hans-Filho G et al. (1998) The Cooperative Group on Fogo Selvagem Research. 1998. Comparison of Blackflies species (Diptera: Simuliidae) on an Amerindian reservation with a high prevalence of fogo selvagem to neighbouring disease free sites in the state of Mato Grosso do Sul, Brazil. Journal of Medical Entomology, 35, 120-131.
    • (1998) Journal of Medical Entomology , vol.35 , pp. 120-131
    • Eaton, D.P.1    Diaz, L.A.2    Hans-Filho, G.3
  • 11
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequences alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: multiple sequences alignment with high accuracy and high throughput. Nucleic Acids Research, 5, 1792-1797.
    • (2004) Nucleic Acids Research , vol.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 12
    • 0036800944 scopus 로고    scopus 로고
    • The indication of morphological degradation of streams and rivers using Simuliidae
    • Feld CK, Kiel E, Lautenschläger M (2002) The indication of morphological degradation of streams and rivers using Simuliidae. Limnologica, 32, 273-288.
    • (2002) Limnologica , vol.32 , pp. 273-288
    • Feld, C.K.1    Kiel, E.2    Lautenschläger, M.3
  • 13
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
    • (1994) Molecular Marine Biology and Biotechnology , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 16
    • 70349795735 scopus 로고    scopus 로고
    • Revision of the Australian Oenochroma vinaria Guenée, 1858 species-complex (Lepidoptera: Geometridae, Oenochrominae): DNA barcoding reveals cryptic diversity and assesses status of type specimen without dissection
    • Hausmann A, Hebert PDN, Mitchell A et al. (2009) Revision of the Australian Oenochroma vinaria Guenée, 1858 species-complex (Lepidoptera: Geometridae, Oenochrominae): DNA barcoding reveals cryptic diversity and assesses status of type specimen without dissection. Zootaxa, 2239, 1-21.
    • (2009) Zootaxa , vol.2239 , pp. 1-21
    • Hausmann, A.1    Hebert, P.D.N.2    Mitchell, A.3
  • 20
    • 84880031600 scopus 로고    scopus 로고
    • A DNA 'barcode blitz': rapid digitization and sequencing of a natural history collection
    • Hebert PDN, DeWaard JR, Zakharov EV et al. (2013) A DNA 'barcode blitz': rapid digitization and sequencing of a natural history collection. PLoS ONE, 8, e68535.
    • (2013) PLoS ONE , vol.8
    • Hebert, P.D.N.1    DeWaard, J.R.2    Zakharov, E.V.3
  • 21
    • 84898539203 scopus 로고    scopus 로고
    • Recommendations by The Natural History Museum on methods for collecting, preserving, rearing and mailing of simuliid specimens. Available from Accessed 12 July 2012.
    • Hernández LM (2007) Recommendations by The Natural History Museum on methods for collecting, preserving, rearing and mailing of simuliid specimens. Available from http://www.blackflies.info. Accessed 12 July 2012.
    • (2007)
    • Hernández, L.M.1
  • 22
    • 84898543029 scopus 로고    scopus 로고
    • Systematics of the blackfly subgenus Trichodagmia Enderlein (Diptera: Simuliidae: Simulium) in the New World. PhD thesis, Wageningen University, Wöhrmann Printing Services
    • Hernández LM (2011) Systematics of the blackfly subgenus Trichodagmia Enderlein (Diptera: Simuliidae: Simulium) in the New World. PhD thesis, Wageningen University, Wöhrmann Printing Services, 546 pp.
    • (2011) , pp. 546
    • Hernández, L.M.1
  • 23
    • 84867390872 scopus 로고    scopus 로고
    • The utility of DNA barcoding for species identification within the blackfly Subgenus Trichodagmia Enderlein (Diptera: Simuliidae: Simulium) and related taxa in the New World
    • Hernández-Triana LM, Crainey JL, Hall A et al. (2012) The utility of DNA barcoding for species identification within the blackfly Subgenus Trichodagmia Enderlein (Diptera: Simuliidae: Simulium) and related taxa in the New World. Zootaxa, 3514, 43-69.
    • (2012) Zootaxa , vol.3514 , pp. 43-69
    • Hernández-Triana, L.M.1    Crainey, J.L.2    Hall, A.3
  • 24
    • 33751313616 scopus 로고    scopus 로고
    • An inexpensive, automation-friendly protocol for recovering high-quality DNA
    • Ivanova NV, DeWaard JR, Hebert PDN (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes, 6, 998-1002.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 998-1002
    • Ivanova, N.V.1    DeWaard, J.R.2    Hebert, P.D.N.3
  • 26
    • 0032060479 scopus 로고    scopus 로고
    • Effects of preservation methods, parasites, and gut contents of blackflies (Diptera: Simuliidae) on Polymerase Chain Reaction products
    • Koch DA, Duncan GA, Parson TJ, Pruess KP, Powers TO (1998) Effects of preservation methods, parasites, and gut contents of blackflies (Diptera: Simuliidae) on Polymerase Chain Reaction products. Journal of Medical Entomology, 35, 313-318.
    • (1998) Journal of Medical Entomology , vol.35 , pp. 313-318
    • Koch, D.A.1    Duncan, G.A.2    Parson, T.J.3    Pruess, K.P.4    Powers, T.O.5
  • 28
    • 84859566929 scopus 로고    scopus 로고
    • DNA barcoding for identification of sand-flies (Diptera: Psychodidae) in India
    • Kumar NP, Srinivasan R, Jambulingam P (2012) DNA barcoding for identification of sand-flies (Diptera: Psychodidae) in India. Molecular Ecology Resources, 12, 414-420.
    • (2012) Molecular Ecology Resources , vol.12 , pp. 414-420
    • Kumar, N.P.1    Srinivasan, R.2    Jambulingam, P.3
  • 29
    • 28444461818 scopus 로고    scopus 로고
    • Assessing morphological degradation in running water using Blackfly communities (Diptera, Simuliidae): can habitat quality be predicted from land use?
    • Lautenschalger M, Kiel E (2005) Assessing morphological degradation in running water using Blackfly communities (Diptera, Simuliidae): can habitat quality be predicted from land use? Limnologica, 35, 262-273.
    • (2005) Limnologica , vol.35 , pp. 262-273
    • Lautenschalger, M.1    Kiel, E.2
  • 30
    • 0035137278 scopus 로고    scopus 로고
    • Suspension feeders transform massive amounts of seston in large northern rivers
    • Malmqvist B, Wotton RS, Zhang Y (2001) Suspension feeders transform massive amounts of seston in large northern rivers. Oikos, 92, 35-43.
    • (2001) Oikos , vol.92 , pp. 35-43
    • Malmqvist, B.1    Wotton, R.S.2    Zhang, Y.3
  • 31
    • 3943079914 scopus 로고    scopus 로고
    • Blackflies in the boreal biome, key organisms in both terrestrial and aquatic environments; a review
    • Malmqvist B, Adler PH, Kuusela K, Merrit RW, Wotton RS (2004) Blackflies in the boreal biome, key organisms in both terrestrial and aquatic environments; a review. Ecoscience, 11, 187-200.
    • (2004) Ecoscience , vol.11 , pp. 187-200
    • Malmqvist, B.1    Adler, P.H.2    Kuusela, K.3    Merrit, R.W.4    Wotton, R.S.5
  • 32
    • 33747134982 scopus 로고    scopus 로고
    • Factors affecting DNA preservation from museum-collected lepidopteran specimens
    • Mandriolli M, Borsatti F, Mola L (2006) Factors affecting DNA preservation from museum-collected lepidopteran specimens. Entomologia Experimentali et Applicata, 120, 239-244.
    • (2006) Entomologia Experimentali et Applicata , vol.120 , pp. 239-244
    • Mandriolli, M.1    Borsatti, F.2    Mola, L.3
  • 33
    • 0027346383 scopus 로고
    • M13 cloning vehicles. Their contribution to DNA sequencing
    • Messing J (1993) M13 cloning vehicles. Their contribution to DNA sequencing. Methods in molecular biology, 23, 9-22.
    • (1993) Methods in molecular biology , vol.23 , pp. 9-22
    • Messing, J.1
  • 37
    • 84898542932 scopus 로고
    • Fundação Serviços de Saúde Pública. Instituto Evandro Chagas: 50 anos de contribuição às ciências biológicas e à medicina tropical
    • Pinheiro FP, Bensabath G, Freitas RB, Costa D (1986) Fundação Serviços de Saúde Pública. Instituto Evandro Chagas: 50 anos de contribuição às ciências biológicas e à medicina tropical. Fundação Serviços de Saúde Pública, 2, 795-798.
    • (1986) Fundação Serviços de Saúde Pública , vol.2 , pp. 795-798
    • Pinheiro, F.P.1    Bensabath, G.2    Freitas, R.B.3    Costa, D.4
  • 38
    • 62149083075 scopus 로고    scopus 로고
    • Agricultural land use and blackflies (Diptera, Simuliidae) species richness and species assemblages in tropical streams, Northern Thailand
    • Pramual P, Kuvangkadilok C (2009) Agricultural land use and blackflies (Diptera, Simuliidae) species richness and species assemblages in tropical streams, Northern Thailand. Hidrobiologia, 625, 173-184.
    • (2009) Hidrobiologia , vol.625 , pp. 173-184
    • Pramual, P.1    Kuvangkadilok, C.2
  • 39
    • 78651380171 scopus 로고    scopus 로고
    • Cryptic biodiversity and phylogenetic relationships revealed by DNA barcoding of Oriental black flies in the subgenus Gomphostilbia (Diptera: Simuliidae)
    • Pramual P, Wongpakam K, Adler PH (2011) Cryptic biodiversity and phylogenetic relationships revealed by DNA barcoding of Oriental black flies in the subgenus Gomphostilbia (Diptera: Simuliidae). Genome, 54, 1-9.
    • (2011) Genome , vol.54 , pp. 1-9
    • Pramual, P.1    Wongpakam, K.2    Adler, P.H.3
  • 40
    • 0032880347 scopus 로고    scopus 로고
    • Preservation of Hymenoptera specimens for subsequent molecular and morphological study
    • Quicke DLJ, Belshaw R, Lopez-Vaamonde C (1999) Preservation of Hymenoptera specimens for subsequent molecular and morphological study. Zoologica Scripta, 28, 261-267.
    • (1999) Zoologica Scripta , vol.28 , pp. 261-267
    • Quicke, D.L.J.1    Belshaw, R.2    Lopez-Vaamonde, C.3
  • 41
    • 34248149943 scopus 로고    scopus 로고
    • BOLD: the barcode of life data system
    • Ratnasingham S, Hebert PND (2007) BOLD: the barcode of life data system. (http://www. barcodinglife.org). Molecular Ecology Notes, 7, 355-364.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 355-364
    • Ratnasingham, S.1    Hebert, P.N.D.2
  • 42
    • 65349144283 scopus 로고    scopus 로고
    • Identification of Nearctic blackflies using DNA barcodes (Diptera: Simuliidae)
    • Rivera J, Currie D (2009) Identification of Nearctic blackflies using DNA barcodes (Diptera: Simuliidae). Molecular Ecology Resources, 9, 224-236.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 224-236
    • Rivera, J.1    Currie, D.2
  • 43
    • 0023375195 scopus 로고
    • The Neighbour-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The Neighbour-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 44
    • 0141676438 scopus 로고    scopus 로고
    • DNA, PCR and formalinized animal tissue - a short review and protocols
    • Schander C, Halanychi K (2003) DNA, PCR and formalinized animal tissue - a short review and protocols. Organisms Diversity and Evolution, 3, 195-205.
    • (2003) Organisms Diversity and Evolution , vol.3 , pp. 195-205
    • Schander, C.1    Halanychi, K.2
  • 46
    • 77956279777 scopus 로고    scopus 로고
    • The Blackflies of Brazil (Diptera, Simuliidae)
    • In, eds Adis J, JArias J, S. Golovatch S, Mantzev KM, Rueda-Delgado G & Domínguez E). Pensoft, Sofia-Moscosw.
    • Shelley AJ, Hernández LM, Maia-Herzog M, Luna DA, Garritano PR (2010). The Blackflies of Brazil (Diptera, Simuliidae). In: Aquatic Biodiversity in Latin America (ABLA Series), Vol. 6. (eds Adis J, JArias J, S. Golovatch S, Mantzev KM, Rueda-Delgado G & Domínguez E), pp. 814. Pensoft, Sofia-Moscosw.
    • (2010) Aquatic Biodiversity in Latin America (ABLA Series) , vol.6 , pp. 814
    • Shelley, A.J.1    Hernández, L.M.2    Maia-Herzog, M.3    Luna, D.A.4    Garritano, P.R.5
  • 47
    • 79960825698 scopus 로고    scopus 로고
    • Pyrosequencing for mini-barcoding of fresh and old museum specimens
    • Shokralla S, Zhou X, Janzen DH et al. (2011) Pyrosequencing for mini-barcoding of fresh and old museum specimens. PLoS ONE, 7, 1-4.
    • (2011) PLoS ONE , vol.7 , pp. 1-4
    • Shokralla, S.1    Zhou, X.2    Janzen, D.H.3
  • 49
    • 80255130012 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 4, 1-18.
    • (2011) Molecular Biology and Evolution , vol.4 , pp. 1-18
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 50
    • 77953036142 scopus 로고    scopus 로고
    • Recovering full DNA barcodes from natural history collections of Tephritid fruitflies (Tephritidae, Diptera) using mini barcodes
    • Van Houdt JKJ, Breman FC, Virgilio M, De Meyer M (2010) Recovering full DNA barcodes from natural history collections of Tephritid fruitflies (Tephritidae, Diptera) using mini barcodes. Molecular Ecology Resources, 10, 459-465.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 459-465
    • Van Houdt, J.K.J.1    Breman, F.C.2    Virgilio, M.3    De Meyer, M.4
  • 51
    • 34147103537 scopus 로고    scopus 로고
    • How useful is DNA extracted from the legs of archived insects for microsatellite-based population genetic analyses?
    • Watts PC, Thompson DJ, Allen KA, Kemp SJ (2007) How useful is DNA extracted from the legs of archived insects for microsatellite-based population genetic analyses? Journal of Insect Conservation, 11, 195-198.
    • (2007) Journal of Insect Conservation , vol.11 , pp. 195-198
    • Watts, P.C.1    Thompson, D.J.2    Allen, K.A.3    Kemp, S.J.4
  • 52
    • 55349105499 scopus 로고    scopus 로고
    • DNA damage in preserved specimens and tissue samples: a molecular assessment
    • Zimmerman J, Hajibabaei M, Blackburn DC et al. (2008) DNA damage in preserved specimens and tissue samples: a molecular assessment. Frontiers in Zoology, 5, 1-13.
    • (2008) Frontiers in Zoology , vol.5 , pp. 1-13
    • Zimmerman, J.1    Hajibabaei, M.2    Blackburn, D.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.