Building freshwater macroinvertebrate DNA-barcode libraries from reference collection material: Formalin preservation vs specimen age

Journal of the North American Benthological Society

Volumn 30, Issue 1, 2011, Pages 125-130

  Baird, Donald J ^a   Pascoe, Timothy J ^b   Zhou, Xin ^c   Hajibabaei, Mehrdad ^c  

^a UNIVERSITY OF NEW BRUNSWICK   (Canada)

^b ENVIRONMENT CANADA   (Canada)

^c UNIVERSITY OF GUELPH   (Canada)

Author keywords

DNA barcode; identification; preservation methods; reference collection; taxonomy; Trichoptera

Indexed keywords

ARTHROPOD; BIOMONITORING; CADDISFLY; COHORT ANALYSIS; ETHANOL; FRESHWATER ECOSYSTEM; IDENTIFICATION KEY; MACROINVERTEBRATE; PRESERVATION; SAMPLING; SPECIMEN BANK;

CANADA;

ARTHROPODA; TRICHOPTERA;

EID: 79952276097     PISSN: 08873593     EISSN: None     Source Type: Journal    
DOI: 10.1899/10-013.1     Document Type: Article

References (20)

1. BAIRD, D. J., M. N. RUBACH, AND P. J. VAN DEN BRINK. 2008. Trait-based ecological risk assessment: the new frontier? Integrated Environmental Assessment and Management 4:2-3.
2. BEANE FREEMAN, L. E., A. BLAIR, J. H. LUBIN, P. A. STEWART, R. B. HAYES, R. N. HOOVER, AND M. HAUPTMANN. 2009. Mortality from lymphohematopoietic malignancies among workers in formaldehyde industries: the National Cancer Institute cohort. Journal of the National Cancer Institute 101:751-761.
3. BORGMANN, U., K. M. RALPH, AND W. P. NORWOOD. 1989. Toxicity test procedures for Hyalella azteca and chronic toxicity of cadmium and pentachlorophenol to H. azteca, Gammarus fasciatus, and Daphnia magna. Archives of Environmental Contamination and Toxicology 18:756-764. (Pubitemid 19211832)
4. ESPELAND, M., M. IRESTEDT, K. A. JOHANSON, M. ÅKERLUND, J.-E. BERGH, AND M. KLLERSJÖ. 2010. Dichlorvos exposure impedes extraction and amplification of DNA from insects in museum collections. Frontiers in Zoology 2010:7. doi:10.1186/1742-9994-7-2
5. FOLMER, O., M. BLACK, W. HOEH, R. LUTZ, AND R. VRIJENHOEK. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3:294-299.
6. HAJIBABAEI, M., M. A. SMITH, D. H. JANZEN, J. J. RODRIGUEZ, J. B. WHITFIELD, AND P. D. N. HEBERT. 2006. A minimalist barcode can identify as specimen whose DNA is degraded. Molecular Ecology Notes 6:959-964. (Pubitemid 44807914)
7. HEBERT, P. D. N., A. CYWINSKA, S. L. BALL, AND J. R. DEWAARD. 2003. Biological identification through DNA barcodes. Proceedings of the Royal Society of London Series B: Biological Sciences 270:313-321. (Pubitemid 36228536)
8. HEBERT, P. D. N., E. H. PENTON, J. M. BURNS, D. H. JANZEN, AND W. HALLWACHS. 2004. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101:14812-14817. (Pubitemid 39410757)
9. HOPKINS, G. W., AND R. P. FRECKLETON. 2002. Declines in the numbers of amateur and professional taxonomists: implications for conservation. Animal Conservation 5:245-249. (Pubitemid 40281210)
10. IVANOVA, N. V., J. R. DEWAARD, AND P. D. N. HEBERT. 2006. An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes 6:998-1002. (Pubitemid 44807923)
11. MARDIS, E. R. 2008. The impact of next-generation sequencing technology on genetics. Trends in Genetics 24:133-141.
12. MEUSNIER, I., G. A. C. SINGER, J. F. LANDRY, D. A. HICKEY, P. D. N. HEBERT, AND M. HAJIBABAEI. 2008. A universal DNA mini-barcode for biodiversity analysis. BMC Genomics 9:214. doi:10.1186/1471-2164-9-214 (Pubitemid 351757107)
13. MILANI, D., T. B. REYNOLDSON, U. BORGMANN, AND J. KOLASA. 2003. The relative sensitivity of four benthic invertebrates to metals in spiked-sediment exposures and application to contaminated field sediment. Environmental Toxicology and Chemistry 22:845-854. (Pubitemid 36596747)
14. REYNOLDSON, T. B., C. LOGAN, D. MILANI, T. PASCOE, AND S. P. THOMPSON. 1998. Methods manual IV: sediment toxicity testing, field and laboratory methods and data management. NWRI Report No. 99-12. Environment Canada, Burlington, Ontario, Canada.
15. REYNOLDSON, T. B., S. P. THOMSON, AND J. L. RAMSEY. 1991. A sediment bioassay using the tubificid oligochaete worm Tubifex tubifex. Environmental Toxicology and Chemistry 10:1061-1072.
16. SINGER, G. A. C., AND M. HAJIBABAEI. 2009. iBarcode.org: webbased molecular biodiversity analysis. BMC Bioinformatics 10 (Suppl 6): S14.
17. SKAGE, M., AND C. SCHANDER. 2007. DNA from formalin-fixed tissue: extraction or repair? That is the question. Marine Biology Research 3:289-295. (Pubitemid 350125845)
18. TAMURA, K., J. DUDLEY, M. NEI, AND S. KUMAR. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software. Version 4.0. Molecular Biology and Evolution 24:1596-1599. (Pubitemid 47236692)
19. ZHOU, X., S. J. ADAMOWICZ, L. M. JACOBUS, R. E. DEWALT, AND P. D. N. HEBERT. 2009. Towards a comprehensive barcode library for arctic life-Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada. Frontiers in Zoology 6:30.
20. ZIMMERMANN, J., M. HAJIBABAEI, D. C. BLACKBURN, J. HANKEN, E. CANTIN, J. POSFAI, AND T. C. EVANS. 2008. DNA damage in preserved specimens and tissue samples: a molecular assessment. Frontiers in Zoology 5:18.