Recent advances in veterinary diagnostic virology: Report from a collaborating centre of the world organization for animal health (OIE)

Advanced Techniques in Diagnostic Microbiology

Volumn , Issue , 2014, Pages 661-678

  Belák, Sándor ^a   Liu, Lihong ^a,b  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b NATIONAL VETERINARY INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84898466532     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4614-3970-7_36     Document Type: Chapter

References (40)

1. Belák S, Thorén P (2008) Validation and quality control of polymerase chain methods used for the diagnosis of infectious diseases. Office International desEpizooties (OIE), manual of diagnostic tests and vaccines for terrestrial animals (mammals, birds and bees), 6th edn. pp 46-55 (Chapter I.1.5). http://www.oie.int/eng/normes/mmanual/2008/pdf/1.1.05.-VALID-PCR.pdf
2. Belák S, Thorén P, LeBlanc N, Viljoen G (2009) Advances in viral disease diagnostic and molecular epidemiological techniques. Exp Rev Mol Diagn 9:367-381
3. Tuan MA, Hai NH (2009) DNA enrichment by functionalized magnetic nanoparticles for onsite and fast detection of virus in biomedical application. J Phys: Conf Ser 187:012059
4. Rasmussen TB, Uttenthal A, Hakhverdyan M et al (2009) Evaluation of automated nucleic acid extraction methods for virus detection in a multiCentre comparative trial. J Virol Methods 155:87-90
5. Heid CA, Stevens J, Livak KJ, Williams PM (1996) Real time quantitative PCR. Genome Res 6:986-994
6. Belák S (2007) Molecular diagnosis of viral diseases, present trends and future aspects: a view from the OIE Collaborating Centre for the application of polymerase chain reaction methods for diagnosis of viral diseases in veterinary medicine. Vaccine 25:5444-5452
7. McKillen J, McMenamy M, Reid SM et al (2011) Pan-serotypic detection offoot and mouth disease virus using a minor-groove binder probe reverse transcription polymerase chain reaction assay. J Virol Methods 174:117-119
8. Zhang XJ, Sun Y, Liu L, Belák S, Qiu HJ (2010) Validation of a loop-mediated isothermal amplification assay for visualised detection of wild-type classical swine fever virus. J Virol Methods 167:74-78
9. Zhang XJ, Han QY, Sun Y, Belák S, Liu L, Qiu HJ (2011) Development of a loop-mediated isothermal amplification for visual detection of the HCLV vaccine against classical swine fever in China. J Virol Methods 171:200-205
10. Blomström AL, Hakhverdyan M, Reid SM, Dukes JP, King DP, Belák S, Berg M (2008) A one-step reverse transcriptase loop-mediated isothermal amplification assay for simple and rapid detection of swine vesicular disease virus. J Virol Methods 147:188-193
11. Reimann I, Depner K, Trapp S, Beer M (2004) An avirulent chimeric pestivirus with altered cell tropism protects pigs against lethal infection with classical swine fever virus. Virology 322:143-157
12. Koenig P, Lange E, Reimann I, Beer M (2007) CP7-E2alf: a safe and efficient marker vaccine strain for oral immunisation of wild boar against classical swine fever virus (CSFV). Vaccine 25:3391-3399
13. Liu L, Hoffmann B, Baule C, Beer M, Belák S, Widén F (2009) Two real-time RT-PCR assays of classical swine fever virus, developed for the genetic differentiation of naturally infected from vaccinated wild boars. J Virol Methods 159:131-133
14. Leifer I, Depner K, Blome S et al (2009) Differentiation of C-strain "Riems" or CP7-E2alf vaccinated animals from animals infected by classical swine fever virus field strains using realtime RT-PCR. J Virol Methods 158:114-122
15. Leifer I, Everett H, Hoffmann B et al (2010) Escape of classical swine fever C-strain vaccine virus from detection by C-strain specific real-time RT-PCR caused by a point mutation in the primer-binding site. J Virol Methods 166:98-100
16. Liu L, Xia H, Belák S, Widén F (2009) Development of a primer-probe energy transfer real-time PCR assay for improved detection of classical swine fever virus. J Virol Methods 160:69-73
17. Rasmussen T, Uttenthal A, de Stricker K, Belák S, Storgaard T (2003) Development of a novel quantitative real-time PCR assay for the simultaneous detection of all serotypes offoot-andmouth disease virus. Arch Virol 148:2005-2021
18. Hakhverdyan M, Rasmussen T, Thorén T, Uttenthal A, Belák S (2006) Development of a realtime PCR assay based on primer-probe energy transfer for the detection of swine vesicular disease virus. Arch Virol 151:2365-2376
19. Leblanc N, Rasmussen TB, Fernández J et al (2010) Development of a real-time RT-PCR assay based on primer-probe energy transfer for the detection of all serotypes of bluetongue virus. J Virol Methods 167:165-171
20. Zhang XJ, Xia H, Everett H et al (2010) Evaluation of a primer-probe energy transfer real-time PCR assay for detection of classical swine fever virus. J Virol Methods 168:259-261
21. Liu L, Xia H, Everett H et al (2011) A generic real-time TaqMan assay for specific detection of lapinized Chinese vaccines against classical swine fever. J Virol Methods 175:170-174
22. Schirrmeier H, Strebelow G, Depner K, Hoffmann B, Beer M (2004) Genetic and antigenic characterization of an atypical pestivirus isolate, a putative member of a novel pestivirus species. J Gen Virol 85:3647-3652
23. Liu L, Xia H, Belák S, Baule C (2008) A TaqMan real-time RT-PCR assay for selective detection of atypical bovine pestiviruses in clinical samples and biological products. J Virol Methods 154:82-85
24. Liu L, Xia H, Baule C, Belák S (2009) Maximum likelihood and Bayesian analyses of a combined nucleotide sequence dataset for genetic characterization of a novel pestivirus, SVA/cont-08. Arch Virol 154:1111-1116
25. Taylor LH, Latham SM, Woolhouse ME (2001) Risk factors for human disease emergence. Philos Trans R Soc Lond B: Biol Sci 356:983-989
26. Escutenaire S, Mohamed N, Isaksson M et al (2007) SYBR Green real-time reverse transcription- polymerase chain reaction assay for the generic detection of coronaviruses. Arch Virol 152:41-58
27. Muradrasoli S, Mohamed N, Hornyák A et al (2009) Broadly targeted multiprobe QPCR for detection of coronaviruses: coronavirus is common among mallard ducks (Anas platyrhynchos). J Virol Methods 159:277-287
28. Muradrasoli S, Bálint A, Wahlgren J et al (2010) Prevalence and phylogenetic relationship of coronaviruses in wild birds from the Bering Strait Area (Beringia). PLoS One 5:e13640
29. Gyarmati P, Mohammed N, Norder H, Blomberg J, Belák S, Widén F (2007) Universal detection of hepatitis E virus by two real-time PCR assays: TaqMan and Primer-Probe Energy Transfer. J Virol Methods 146:226-235
30. Widén F, Sundqvist L, Matyi-Toth A et al (2011) Molecular epidemiology of hepatitis E virus in humans, pigs and wild boars in Sweden. Epidemiol Infect 139:361-371
31. Gullberg M, Gústafsdóttir SM, Schallmeiner E et al (2004) Cytokine detection by antibodybased proximity ligation. Proc Natl Acad Sci U S A 101:8420-8424
32. Schlingemann J, Leijon M, Yacoub A et al (2010) Novel means of viral antigen identification: improved detection of avian in fluenza viruses by proximity ligation. J Virol Methods 163:116-122
33. LeBlanc N, Leijon M, Jobs M, Blomberg J, Belák S (2010) A novel combination of TaqMan RT-PCR and a suspension microarray assay for the detection and species identification of pestiviruses. Vet Microbiol 142:81-86
34. Xia H, Liu L, Nordengrahn A et al (2010) A microsphere-based immunoassay for rapid and sensitive detection of bovine viral diarrhoea virus antibodies. J Virol Methods 168:18-21
35. Blomström AL, Belák S, Fossum C et al (2009) Detection of a novel porcine boca-like virus in the background of porcine circovirus type 2 induced postweaning multisystemic wasting syndrome. Virus Res 146:125-129
36. Blomström AL, Belák S, Fossum C, Fuxler L, Wallgren P, Berg M (2010) Studies of porcine circovirus type 2, porcine boca-like virus and torque teno virus indicate the presence of multiple viral infections in postweaning multisystemic wasting syndrome pigs. Virus Res 152:59-64
37. Gavier-Widén D, Bröjer C, Dietz HH et al (2004) Investigations into shaking mink syndrome: an encephalomyelitis of unknown cause in farmed mink (Mustela vison) kits in Scandinavia. J Vet Diagn Invest 16:305-312
38. Blomström AL, Widén F, Hammer AS, Belák S, Berg M (2010) Detection of a novel astrovirus in brain tissue of mink suffering from shaking mink syndrome by use of viral metagenomics. J Clin Microbiol 48:4392-4396
39. Liu L, Kampa J, Belák S, Baule C (2009) Virus recovery and full-length sequence analysis of atypical bovine pestivirus Th/04-KhonKaen. Vet Microbiol 138:62-68
40. Liu L, Xia H, Wahlberg N, Belák S, Baule C (2009) Phylogeny, classi fication and evolutionary insights into pestiviruses. Virology 385:351-357