-
1
-
-
0037457969
-
Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the Mid-Atlantic Ridge
-
DOI 10.1073/pnas.0235779100
-
López-Garcia, P., Philippe, H., Gail, F. & Moreira, D. Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the Mid-Atlantic Ridge. Proc. Natl. Acad. Sci. U S A. 100, 697-702 (2003). (Pubitemid 36126115)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.2
, pp. 697-702
-
-
Lopez-Garcia, P.1
Philippe, H.2
Gail, F.3
Moreira, D.4
-
2
-
-
0036727272
-
Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean
-
DOI 10.1128/AEM.68.9.4554-4558.2002
-
Massana, R., Guillou, L., Díez, B. & Pedrós- Alió, C. Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean. Appl. Environ. Microbiol. 68, 4554-4558 (2002). (Pubitemid 34988141)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.9
, pp. 4554-4558
-
-
Massana, R.1
Guillou, L.2
Diez, B.3
Pedros-Alio, C.4
-
3
-
-
39749142234
-
A photosynthetic alveolate closely related to apicomplexan parasites
-
DOI 10.1038/nature06635, PII NATURE06635
-
Moore, R. B. et al. A photosynthetic alveolate closely related to apicomplexan parasites. Nature. 451, 959-963 (2008). (Pubitemid 351301735)
-
(2008)
Nature
, vol.451
, Issue.7181
, pp. 959-963
-
-
Moore, R.B.1
Obornik, M.2
Janouskovec, J.3
Chrudimsky, T.4
Vancova, M.5
Green, D.H.6
Wright, S.W.7
Davies, N.W.8
Bolch, C.J.S.9
Heimann, K.10
Slapeta, J.11
Hoegh-Guldberg, O.12
Logsdon Jr., J.M.13
Carter, D.A.14
-
4
-
-
84872275716
-
Rigifila ramosa n. gen., n. sp. Filose amoeba with a distinct pellicle, is related to Micronuclearia
-
Yabuki, A., Ishida, K. & Cavalier-Smith, T. Rigifila ramosa n. gen., n. sp. Filose amoeba with a distinct pellicle, is related to Micronuclearia. Protist. 164, 75-88 (2013).
-
(2013)
Protist.
, vol.164
, pp. 75-88
-
-
Yabuki, A.1
Ishida, K.2
Cavalier-Smith, T.3
-
5
-
-
84875425357
-
Picomonas judraskeda gen. et sp. nov.: The first identified member of the Picozoa phylum nov., a widespread group of picoeukaryotes, formerly known as 'picobiliphytes'
-
Seenivasan, R., Sausen, N. Medlin, L. K. & Melkonian, M. Picomonas judraskeda gen. et sp. nov.: the first identified member of the Picozoa phylum nov., a widespread group of picoeukaryotes, formerly known as 'picobiliphytes'. PLoS ONE. 8, e59565 (2013).
-
(2013)
PLoS ONE.
, vol.8
-
-
Seenivasan, R.1
Sausen, N.2
Medlin, L.K.3
Melkonian, M.4
-
6
-
-
33846502698
-
Picobiliphytes: A marine picoplanktonic algal group with unknown affinities to other eukaryotes
-
DOI 10.1126/science.1136264
-
Not, F. et al. Picobiliphytes: a marine picoplanktonic algal group with unknown affinities to other eukaryotes. Science. 315, 253-255 (2007). (Pubitemid 46166373)
-
(2007)
Science
, vol.315
, Issue.5809
, pp. 253-255
-
-
Not, F.1
Valentin, K.2
Romari, K.3
Lovejoy, C.4
Massana, R.5
Tobe, K.6
Vaulot, D.7
Medlin, L.K.8
-
7
-
-
77955656595
-
Palpitomonas bilix gen. et sp. nov.: A novel deep-branching heterotroph possibly related to Archaeplastida or Hacrobia
-
Yabuki, A., Inagaki, Y. & Ishida, K. Palpitomonas bilix gen. et sp. nov.: A novel deep-branching heterotroph possibly related to Archaeplastida or Hacrobia. Protist. 161, 523-538 (2010).
-
(2010)
Protist.
, vol.161
, pp. 523-538
-
-
Yabuki, A.1
Inagaki, Y.2
Ishida, K.3
-
8
-
-
77349112000
-
The endosymbiotic origin, diversification and fate of plastids
-
Keeling, P. J. The endosymbiotic origin, diversification and fate of plastids. Phil. Trans. R. Soc. B. 365, 729-748 (2010).
-
(2010)
Phil. Trans. R. Soc. B.
, vol.365
, pp. 729-748
-
-
Keeling, P.J.1
-
9
-
-
70349382868
-
Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov
-
Okamoto, N., Chantangsi, C., Horák, A., Leander, B. S. & Keeling, P. J. Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov. PLoS ONE. 4, e7080 (2009).
-
(2009)
PLoS ONE.
, vol.4
-
-
Okamoto, N.1
Chantangsi, C.2
Horák, A.3
Leander, B.S.4
Keeling, P.J.5
-
10
-
-
84888589498
-
Symbiogenesis: Mechanisms, evolutionary consequences, and systematic implications
-
Cavalier-Smith, T. Symbiogenesis: Mechanisms, evolutionary consequences, and systematic implications. Annu. Rev. Ecol. Evol. Syst. 44, 145-172 (2013).
-
(2013)
Annu. Rev. Ecol. Evol. Syst.
, vol.44
, pp. 145-172
-
-
Cavalier-Smith, T.1
-
11
-
-
33748895571
-
An exceptional horizontal gene transfer in plastids: Gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
-
Rice, D. W. & Palmer, J. D. An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biology. 4, 31 (2006).
-
(2006)
BMC Biology.
, vol.4
, pp. 31
-
-
Rice, D.W.1
Palmer, J.D.2
-
12
-
-
84894673075
-
Comprehensive SSU RRNA phylogeny of eukaryota
-
Ishida, K. et al. Comprehensive SSU rRNA Phylogeny of Eukaryota. Endocyt. Cell Res. 20, 81-88 (2010).
-
(2010)
Endocyt. Cell Res.
, vol.20
, pp. 81-88
-
-
Ishida, K.1
-
13
-
-
58349101981
-
The puzzle of plastid evolution
-
Archibald, J. M. The puzzle of plastid evolution. Curr. Biol. 19, R81-R88 (2009).
-
(2009)
Curr. Biol.
, vol.19
-
-
Archibald, J.M.1
-
14
-
-
77954090275
-
Kingdoms protozoa and chromista and the eozoan root of the eukaryotic tree
-
Cavalier-Smith, T. Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree. Biol. Lett. 6, 342-345 (2009).
-
(2009)
Biol. Lett.
, vol.6
, pp. 342-345
-
-
Cavalier-Smith, T.1
-
15
-
-
84859945474
-
The evolutionary history of haptophytes and cryptophytes: Phylogenomic evidence for separate origins
-
Burki, F., Okamoto, N., Pombert, J. F. & Keeling, P. J. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc. Biol. Sci. B. 279, 2246-2254 (2012).
-
(2012)
Proc. Biol. Sci. B.
, vol.279
, pp. 2246-2254
-
-
Burki, F.1
Okamoto, N.2
Pombert, J.F.3
Keeling, P.J.4
-
16
-
-
40749116835
-
Phylogenomic reshuffles the eukaryotic supergroups
-
Burki, F. et al. Phylogenomic reshuffles the eukaryotic supergroups. PLoS ONE. 2, e790 (2007).
-
(2007)
PLoS ONE.
, vol.2
-
-
Burki, F.1
-
17
-
-
84898475216
-
Gene content evolution in discobid mitochondria deduced from the phylogenetic position and complete mitochondrial genome of Tsukubamonas globosa
-
Kamikawa, R. et al. Gene content evolution in discobid mitochondria deduced from the phylogenetic position and complete mitochondrial genome of Tsukubamonas globosa. Genome Biol. Evol. 6, 306-315 (2014).
-
(2014)
Genome Biol. Evol.
, vol.6
, pp. 306-315
-
-
Kamikawa, R.1
-
18
-
-
84861386206
-
Collodictyon -an ancient lineage in the tree of eukaryotes
-
Zhao, S. et al. Collodictyon -an ancient lineage in the tree of eukaryotes. Mol. Biol. Evol. 29, 1557-1568 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1557-1568
-
-
Zhao, S.1
-
19
-
-
79955787125
-
Single-cell genomics reveals organismal interactions in uncultivated marine protists
-
Yoon, H. S. et al. Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science. 332, 714-717 (2011).
-
(2011)
Science.
, vol.332
, pp. 714-717
-
-
Yoon, H.S.1
-
20
-
-
0028011713
-
Ultrastructure, biogenesis, and functions of extrusive organelles in selected non-ciliate protists
-
Kugrens, P., Lee, R. E. & Corliss, J. O. Ultrastructure, biogenesis, and functions of extrusive organelles in selected non-ciliate protists. Protoplasma. 181, 164-190 (1994). (Pubitemid 2161089)
-
(1994)
Protoplasma
, vol.181
, Issue.1-4
, pp. 164-190
-
-
Kugrens, P.1
Lee, R.E.2
Corliss, J.O.3
-
21
-
-
84861875040
-
Trichocyst ribbons of a cryptomonads are constituted of homologs of R-body proteins produced by the intracellular parasitic bacterium of Paramecium
-
Yamagishi, T., Kai, A. & Kawai, H. Trichocyst ribbons of a cryptomonads are constituted of homologs of R-body proteins produced by the intracellular parasitic bacterium of Paramecium. J. Mol. Evol. 74, 147-157 (2012).
-
(2012)
J. Mol. Evol.
, vol.74
, pp. 147-157
-
-
Yamagishi, T.1
Kai, A.2
Kawai, H.3
-
22
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy, S. R. Accelerated profile HMM searches. PLoS Computat. Biol. 7, e1002195 (2011).
-
(2011)
PLoS Computat. Biol.
, vol.7
-
-
Eddy, S.R.1
-
23
-
-
84861337110
-
Oxnerella micra sp. n. (Oxnerellidae fam. n.), a tiny naked centrohelid, and the diversity and evolution of heliozoa
-
Cavalier-Smith, T. & Chao, E. E. Oxnerella micra sp. n. (Oxnerellidae fam. n.), a tiny naked centrohelid, and the diversity and evolution of heliozoa. Protist. 163, 574-601 (2012).
-
(2012)
Protist.
, vol.163
, pp. 574-601
-
-
Cavalier-Smith, T.1
Chao, E.E.2
-
24
-
-
0000603739
-
Organization of cryptomonads
-
Patterson, D. J. & Larsen, J. (eds.), Clarendon press, Oxford
-
Kugrens, P. & Lee, R. E. Organization of cryptomonads. The Biology of Free-living Heterotrophic Flagellates. Patterson, D. J. & Larsen, J. (eds.). 219-233 (Clarendon press, Oxford, 1991).
-
(1991)
The Biology of Free-living Heterotrophic Flagellates
, pp. 219-233
-
-
Kugrens, P.1
Lee, R.E.2
-
25
-
-
0009747013
-
Étude ultrastructurale de (Cyathomonas truncata) from (flagellé Cryptomonadine)
-
Mignot, J. P.Étude ultrastructurale de (Cyathomonas truncata) from (flagellé Cryptomonadine). J Microsc. (Paris). 4, 239-252 (1965).
-
(1965)
J Microsc. (Paris).
, vol.4
, pp. 239-252
-
-
Mignot, J.P.1
-
26
-
-
0033103623
-
Systematics of the enigmatic kathablepharids, including em characterization of the type species, kathablepharis phoenikoston, and new observations on K
-
Clay, B. & Kugrens, P. Systematics of the enigmatic kathablepharids, including EM characterization of the type species, Kathablepharis phoenikoston, and new observations on K. remigera comb. nov. Protist. 150, 43-59 (1999).
-
(1999)
Remigera Comb. Nov. Protist.
, vol.150
, pp. 43-59
-
-
Clay, B.1
Kugrens, P.2
-
27
-
-
84989617446
-
Katablepharis ovalis, a colorless flagellate with interesting cytological characteristic
-
Lee, R. E. & Kugrens, P. Katablepharis ovalis, a colorless flagellate with interesting cytological characteristic. J. Phycol. 27, 505-513 (1991).
-
(1991)
J. Phycol.
, vol.27
, pp. 505-513
-
-
Lee, R.E.1
Kugrens, P.2
-
28
-
-
84986759343
-
Ultrastructural variations in cryptomonad flagella
-
Kugrens, P., Lee, R. E. & Andersen, R. A. Ultrastructural variations in cryptomonad flagella. J. Phycol. 23, 511-518 (1987).
-
(1987)
J. Phycol.
, vol.23
, pp. 511-518
-
-
Kugrens, P.1
Lee, R.E.2
Andersen, R.A.3
-
29
-
-
0032838597
-
Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
-
Cavalier-Smith, T. Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J. Eukaryot. Microbiol. 46, 347-366 (1999). (Pubitemid 29395704)
-
(1999)
Journal of Eukaryotic Microbiology
, vol.46
, Issue.4
, pp. 347-366
-
-
Cavalier-Smith, T.1
-
30
-
-
51649088380
-
Diversification of unicellular eukaryotes: Cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny
-
Shalchian-Tabrizi, K. et al.Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environ. Microbiol. 10, 2635-2644 (2008).
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 2635-2644
-
-
Shalchian-Tabrizi, K.1
-
31
-
-
84876422301
-
Ultrastructure and molecular phylogeny of the cryptomonad Goniomonas avonlea sp. Nov
-
Kim, E. & Archibald, J. M. Ultrastructure and molecular phylogeny of the cryptomonad Goniomonas avonlea sp. nov. Protist. 164, 160-182 (2013).
-
(2013)
Protist.
, vol.164
, pp. 160-182
-
-
Kim, E.1
Archibald, J.M.2
-
32
-
-
77954202143
-
NIES-collection list of strains
-
8th edition.
-
Kasai, F., Kawachi, M., Erata, M., Mori, F., Yumoto, K., Sato, M. & Ishimoto, M. NIES-collection list of strains, 8th edition. Jap. J. Phycol. (Sôrui) 57 (Suppl.), 1-350 (2004).
-
(2004)
Jap. J. Phycol. (Sôrui)
, vol.57
, Issue.SUPPL.
, pp. 1-350
-
-
Kasai, F.1
Kawachi, M.2
Erata, M.3
Mori, F.4
Yumoto, K.5
Sato, M.6
Ishimoto, M.7
-
33
-
-
3042615882
-
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
-
DOI 10.1101/gr.1917404
-
Chevreux, B. et al. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res. 14, 1147-1159 (2004). (Pubitemid 38811551)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1147-1159
-
-
Chevreux, B.1
Pfisterer, T.2
Drescher, B.3
Driesel, A.J.4
Muller, W.E.G.5
Wetter, T.6
Suhai, S.7
-
34
-
-
45849154166
-
An improved general amino acid replacement matrix
-
DOI 10.1093/molbev/msn067
-
Le, S. Q. & Gascuel, O. An improved general amino acid replacementmatrix. Mol. Biol. Evol. 25, 1307-1320 (2008). (Pubitemid 351882003)
-
(2008)
Molecular Biology and Evolution
, vol.25
, Issue.7
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
35
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
DOI 10.1093/bioinformatics/btl446
-
Stamatakis, A. RAxML-VI-HPC: Maximum likelihood based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22, 2688-2690 (2006). (Pubitemid 44642609)
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
36
-
-
84881629698
-
PhyloBayes MPI: Phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment
-
Lartillot, N., Rodrigue, N., Stubbs, D. & Richer, J. PhyloBayes MPI: Phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment. Syst. Boil. 62, 611-615 (2013).
-
(2013)
Syst. Boil.
, vol.62
, pp. 611-615
-
-
Lartillot, N.1
Rodrigue, N.2
Stubbs, D.3
Richer, J.4
-
37
-
-
84866924443
-
Modeling protein evolution with several amino acid replacement matrices depending on site rates
-
Le, S.Q., Dang, C. C.&Gascuel, O. Modeling protein evolution with several amino acid replacement matrices depending on site rates. Mol. Biol. Evol. 29, 2921-2936 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 2921-2936
-
-
Le, S.Q.1
Dang, C.2
Gascuel, O.3
|