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Volumn 289, Issue 2, 2014, Pages 225-236

A genome-wide analysis of the expansin genes in Malus × Domestica

Author keywords

Expansin; Gene family; Genome wide analysis; Malus Domestica

Indexed keywords

APPLE; ARABIDOPSIS; ARTICLE; CHROMOSOME DUPLICATION; EXPANSIN GENE; EXPRESSED SEQUENCE TAG; FRUIT DEVELOPMENT; GENE DUPLICATION; GENE STRUCTURE; GENOME ANALYSIS; GRAPE; MDEXPA16 GENE; MDEXPA20 GENE; MICROARRAY ANALYSIS; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GENE; POPULUS; PRIORITY JOURNAL; PROTEIN MOTIF; REGULATORY MECHANISM; RICE;

EID: 84898059578     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-013-0796-y     Document Type: Article
Times cited : (43)

References (50)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 146917 9254694 10.1093/nar/25.17.3389
    • Altschul S, Madden T, Schäffer A, Zhang J, Zhang Z, Miller W, Lipman D (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.1    Madden, T.2    Schäffer, A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.7
  • 3
    • 15944375190 scopus 로고    scopus 로고
    • Changes in expansin activity and gene expression during ethylene-promoted leaflet abscission in Sambucus nigra
    • 15689341 10.1093/jxb/eri076
    • Belfield EJ, Ruperti B, Roberts JA, McQueen-Mason S (2005) Changes in expansin activity and gene expression during ethylene-promoted leaflet abscission in Sambucus nigra. J Exp Bot 56:817-823
    • (2005) J Exp Bot , vol.56 , pp. 817-823
    • Belfield, E.J.1    Ruperti, B.2    Roberts, J.A.3    McQueen-Mason, S.4
  • 4
    • 48549100257 scopus 로고    scopus 로고
    • Role of swollenin, an expansin-like protein from Trichoderma, in plant root colonization
    • 2409044 18400936 10.1104/pp.108.116293
    • Brotman Y, Briff E, Viterbo A, Chet I (2008) Role of swollenin, an expansin-like protein from Trichoderma, in plant root colonization. Plant Physiol 147:779-789
    • (2008) Plant Physiol , vol.147 , pp. 779-789
    • Brotman, Y.1    Briff, E.2    Viterbo, A.3    Chet, I.4
  • 5
    • 0033035265 scopus 로고    scopus 로고
    • Differential expression of expansin gene family members during growth and ripening of tomato fruit
    • 10080718 10.1023/A:1006130018931
    • Brummell DA, Harpster MH, Dunsmuir P (1999) Differential expression of expansin gene family members during growth and ripening of tomato fruit. Plant Mol Biol 39:161-169
    • (1999) Plant Mol Biol , vol.39 , pp. 161-169
    • Brummell, D.A.1    Harpster, M.H.2    Dunsmuir, P.3
  • 6
    • 79954507562 scopus 로고    scopus 로고
    • Expression patterns of three alpha-expansin isoforms in Coffea arabica during fruit development
    • 10.1111/j.1438-8677.2010.00400.x
    • Budzinski IG, Santos TB, Sera T, Pot D, Vieira LG, Pereira LF (2011) Expression patterns of three alpha-expansin isoforms in Coffea arabica during fruit development. Plant Biol (Stuttg) 13:462-471
    • (2011) Plant Biol (Stuttg) , vol.13 , pp. 462-471
    • Budzinski, I.G.1    Santos, T.B.2    Sera, T.3    Pot, D.4    Vieira, L.G.5    Pereira, L.F.6
  • 7
    • 2942620598 scopus 로고    scopus 로고
    • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    • 446195 15171794 10.1186/1471-2229-4-10
    • Cannon SB, Mitra A, Baumgarten A, Young ND, May G (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 4:10-30
    • (2004) BMC Plant Biol , vol.4 , pp. 10-30
    • Cannon, S.B.1    Mitra, A.2    Baumgarten, A.3    Young, N.D.4    May, G.5
  • 8
    • 34547746888 scopus 로고    scopus 로고
    • Portrait of the expansin superfamily in Physcomitrella patens: Comparisons with angiosperm expansins
    • 3243571 17416912 10.1093/aob/mcm044
    • Carey RE, Cosgrove DJ (2007) Portrait of the expansin superfamily in Physcomitrella patens: comparisons with angiosperm expansins. Ann Bot 99:1131-1141
    • (2007) Ann Bot , vol.99 , pp. 1131-1141
    • Carey, R.E.1    Cosgrove, D.J.2
  • 9
    • 0036915260 scopus 로고    scopus 로고
    • Regulation of root hair initiation and expansin gene expression in Arabidopsis
    • 151215 12468740 10.1105/tpc.006437
    • Cho HT, Cosgrove DJ (2002) Regulation of root hair initiation and expansin gene expression in Arabidopsis. Plant Cell 14:3237-3253
    • (2002) Plant Cell , vol.14 , pp. 3237-3253
    • Cho, H.T.1    Cosgrove, D.J.2
  • 10
    • 0033385206 scopus 로고    scopus 로고
    • An expansin gene expressed in ripening strawberry fruit
    • 59494 10594114 10.1104/pp.121.4.1273
    • Civello PM, Powell AL, Sabehat A, Bennett AB (1999) An expansin gene expressed in ripening strawberry fruit. Plant Physiol 121:1273-1280
    • (1999) Plant Physiol , vol.121 , pp. 1273-1280
    • Civello, P.M.1    Powell, A.L.2    Sabehat, A.3    Bennett, A.B.4
  • 11
    • 0034082690 scopus 로고    scopus 로고
    • Expansive growth of plant cell walls
    • 11543185 10.1016/S0981-9428(00)00164-9
    • Cosgrove DJ (2000) Expansive growth of plant cell walls. Plant Physiol Biochem 38:109-124
    • (2000) Plant Physiol Biochem , vol.38 , pp. 109-124
    • Cosgrove, D.J.1
  • 13
    • 16544379974 scopus 로고    scopus 로고
    • The roles of ethylene, auxin, abscisic acid, and gibberellin in the hyponastic growth of submerged Rumex palustris petioles
    • 523357 15466223 10.1104/pp.104.049197
    • Cox MC, Benschop JJ, Vreeburg RA, Wagemaker CA, Moritz T, Peeters AJ, Voesenek LA (2004) The roles of ethylene, auxin, abscisic acid, and gibberellin in the hyponastic growth of submerged Rumex palustris petioles. Plant Physiol 136:2948-2960
    • (2004) Plant Physiol , vol.136 , pp. 2948-2960
    • Cox, M.C.1    Benschop, J.J.2    Vreeburg, R.A.3    Wagemaker, C.A.4    Moritz, T.5    Peeters, A.J.6    Voesenek, L.A.7
  • 14
    • 43549101425 scopus 로고    scopus 로고
    • Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice
    • 2254934 18192436 10.1105/tpc.107.055657
    • Ding X, Cao Y, Huang L, Zhao J, Xu C, Li X, Wang S (2008) Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice. Plant Cell 20:228-240
    • (2008) Plant Cell , vol.20 , pp. 228-240
    • Ding, X.1    Cao, Y.2    Huang, L.3    Zhao, J.4    Xu, C.5    Li, X.6    Wang, S.7
  • 15
    • 33747800342 scopus 로고    scopus 로고
    • Expression of expansin genes in strawberry varieties with contrasting fruit firmness
    • 16889972 10.1016/j.plaphy.2006.06.008
    • Dotto MC, Martinez GA, Civello PM (2006) Expression of expansin genes in strawberry varieties with contrasting fruit firmness. Plant Physiol Biochem 44:301-307
    • (2006) Plant Physiol Biochem , vol.44 , pp. 301-307
    • Dotto, M.C.1    Martinez, G.A.2    Civello, P.M.3
  • 16
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • 390337 15034147 10.1093/nar/gkh340
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 84869172142 scopus 로고    scopus 로고
    • Heat shock transcriptional factors in Malus domestica: Identification, classification and expression analysis
    • 3575323 23167251 10.1186/1471-2164-13-639
    • Giorno F, Guerriero G, Baric S, Mariani C (2012) Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis. BMC Genomics 13:639-651
    • (2012) BMC Genomics , vol.13 , pp. 639-651
    • Giorno, F.1    Guerriero, G.2    Baric, S.3    Mariani, C.4
  • 19
    • 33845632542 scopus 로고    scopus 로고
    • Ethylene-regulation of fruit softening and softening-related genes in peach
    • 17077183 10.1093/jxb/erl178
    • Hayama H, Shimada T, Fujii H, Ito A, Kashimura Y (2006) Ethylene-regulation of fruit softening and softening-related genes in peach. J Exp Bot 57:4071-4077
    • (2006) J Exp Bot , vol.57 , pp. 4071-4077
    • Hayama, H.1    Shimada, T.2    Fujii, H.3    Ito, A.4    Kashimura, Y.5
  • 20
    • 36048961743 scopus 로고    scopus 로고
    • Expression of three expansin genes during development and maturation of Kyoho grape berries
    • 17175064 10.1016/j.jplph.2006.07.017
    • Ishimaru M, Smith DL, Gross KC, Kobayashi S (2007) Expression of three expansin genes during development and maturation of Kyoho grape berries. J Plant Physiol 164:1675-1682
    • (2007) J Plant Physiol , vol.164 , pp. 1675-1682
    • Ishimaru, M.1    Smith, D.L.2    Gross, K.C.3    Kobayashi, S.4
  • 23
    • 77956043498 scopus 로고    scopus 로고
    • An expansin-like protein from Hahella chejuensis binds cellulose and enhances cellulase activity
    • 10.1007/s10059-010-0033-z
    • Lee HJ, Lee S, Ko HJ, Kim KH, Choi IG (2011) An expansin-like protein from Hahella chejuensis binds cellulose and enhances cellulase activity. Mol Cells 29:379-385
    • (2011) Mol Cells , vol.29 , pp. 379-385
    • Lee, H.J.1    Lee, S.2    Ko, H.J.3    Kim, K.H.4    Choi, I.G.5
  • 24
    • 84862221167 scopus 로고    scopus 로고
    • SMART 7: Recent updates to the protein domain
    • 10.1093/nar/gkr931
    • Letunic I, Doerks T, Bork P (2012) SMART 7: recent updates to the protein domain. Nucleic Acids Res 40:302-305
    • (2012) Nucleic Acids Res , vol.40 , pp. 302-305
    • Letunic, I.1    Doerks, T.2    Bork, P.3
  • 27
    • 80052594616 scopus 로고    scopus 로고
    • Genome-wide analysis of the RING finger gene family in apple
    • 21630098 10.1007/s00438-011-0625-0
    • Li YZ, Wu BJ, Yu YL, Yang GD, Wu CA, Zheng CC (2011) Genome-wide analysis of the RING finger gene family in apple. Mol Genet Genomics 286:81-94
    • (2011) Mol Genet Genomics , vol.286 , pp. 81-94
    • Li, Y.Z.1    Wu, B.J.2    Yu, Y.L.3    Yang, G.D.4    Wu, C.A.5    Zheng, C.C.6
  • 28
    • 85027956553 scopus 로고    scopus 로고
    • Genome-wide identification and expression profiling of dehydrin gene family in Malus domestica
    • 23053973 10.1007/s11033-012-1968-2
    • Liang D, Xia H, Wu S, Ma F (2012) Genome-wide identification and expression profiling of dehydrin gene family in Malus domestica. Mol Biol Rep 39:10759-10768
    • (2012) Mol Biol Rep , vol.39 , pp. 10759-10768
    • Liang, D.1    Xia, H.2    Wu, S.3    Ma, F.4
  • 29
    • 79959939600 scopus 로고    scopus 로고
    • Root hair-specific EXPANSIN A7 is required for root hair elongation in Arabidopsis
    • 3933966 21359675 10.1007/s10059-011-0046-2
    • Lin C, Choi HS, Cho HT (2011) Root hair-specific EXPANSIN A7 is required for root hair elongation in Arabidopsis. Mol Cells 31:393-397
    • (2011) Mol Cells , vol.31 , pp. 393-397
    • Lin, C.1    Choi, H.S.2    Cho, H.T.3
  • 30
    • 66249127602 scopus 로고    scopus 로고
    • Expression patterns of cell wall-modifying genes from banana during fruit ripening and in relationship with finger drop
    • 2682500 19357434 10.1093/jxb/erp079
    • Mbéguié-A-Mbéguié D, Hubert O, Baurens FC, Matsumoto T, Chillet M, Fils-Lycaon B, Sidibé-Bocs S (2009) Expression patterns of cell wall-modifying genes from banana during fruit ripening and in relationship with finger drop. J Exp Bot 60:2021-2034
    • (2009) J Exp Bot , vol.60 , pp. 2021-2034
    • Mbéguié-A-Mbéguié, D.1    Hubert, O.2    Baurens, F.C.3    Matsumoto, T.4    Chillet, M.5    Fils-Lycaon, B.6    Sidibé-Bocs, S.7
  • 31
    • 0026955916 scopus 로고
    • Two endogenous proteins that induce cell wall extension in plants
    • 160229 11538167
    • McQueen-Mason S, Durachko DM, Cosgrove DJ (1992) Two endogenous proteins that induce cell wall extension in plants. Plant Cell 4:1425-1433
    • (1992) Plant Cell , vol.4 , pp. 1425-1433
    • McQueen-Mason, S.1    Durachko, D.M.2    Cosgrove, D.J.3
  • 32
    • 0347364640 scopus 로고    scopus 로고
    • The early stages of duplicate gene evolution
    • 307628 14671323 10.1073/pnas.2535513100
    • Moore RC, Purugganan MD (2003) The early stages of duplicate gene evolution. Proc Natl Acad Sci USA 100:15682-15687
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 15682-15687
    • Moore, R.C.1    Purugganan, M.D.2
  • 33
    • 84978458874 scopus 로고    scopus 로고
    • Using the basic local alignment search tool (BLAST)
    • doi: 10.1101/pdb.top17
    • Mount DW (2007) Using the basic local alignment search tool (BLAST). CSH Protoc pdb.top17. doi: 10.1101/pdb.top17
    • (2007) CSH Protoc Pdb.top , vol.17
    • Mount, D.W.1
  • 35
    • 0344928207 scopus 로고    scopus 로고
    • Simultaneous transgenic suppression of LePG and LeExp1 influences fruit texture and juice viscosity in a fresh market tomato variety
    • 14640598 10.1021/jf034165d
    • Powell AL, Kalamaki MS, Kurien PA, Gurrieri S, Bennett AB (2003) Simultaneous transgenic suppression of LePG and LeExp1 influences fruit texture and juice viscosity in a fresh market tomato variety. J Agric Food Chem 51:7450-7455
    • (2003) J Agric Food Chem , vol.51 , pp. 7450-7455
    • Powell, A.L.1    Kalamaki, M.S.2    Kurien, P.A.3    Gurrieri, S.4    Bennett, A.B.5
  • 36
    • 33746259633 scopus 로고    scopus 로고
    • The expansin superfamily
    • 1414085 16356276 10.1186/gb-2005-6-12-242
    • Sampedro J, Cosgrove DJ (2005) The expansin superfamily. Genome Biol 6:242-252
    • (2005) Genome Biol , vol.6 , pp. 242-252
    • Sampedro, J.1    Cosgrove, D.J.2
  • 37
    • 30344479008 scopus 로고    scopus 로고
    • Use of genomic history to improve phylogeny and understanding of births and deaths in a gene family
    • 16236151 10.1111/j.1365-313X.2005.02540.x
    • Sampedro J, Lee Y, Carey RE, dePamphilis C, Cosgrove DJ (2005) Use of genomic history to improve phylogeny and understanding of births and deaths in a gene family. Plant J 44:409-419
    • (2005) Plant J , vol.44 , pp. 409-419
    • Sampedro, J.1    Lee, Y.2    Carey, R.E.3    Depamphilis, C.4    Cosgrove, D.J.5
  • 38
    • 32944468574 scopus 로고    scopus 로고
    • Genome histories clarify evolution of the expansin superfamily: New insights from the poplar genome and pine ESTs
    • 16411016 10.1007/s10265-005-0253-z
    • Sampedro J, Carey RE, Cosgrove DJ (2006) Genome histories clarify evolution of the expansin superfamily: new insights from the poplar genome and pine ESTs. J Plant Res 119:11-21
    • (2006) J Plant Res , vol.119 , pp. 11-21
    • Sampedro, J.1    Carey, R.E.2    Cosgrove, D.J.3
  • 39
    • 69949134920 scopus 로고    scopus 로고
    • Plant cell walls throughout evolution: Towards a molecular understanding of their design principles
    • 19687127 10.1093/jxb/erp245
    • Sarkar P, Bosneaga E, Auer M (2009) Plant cell walls throughout evolution: towards a molecular understanding of their design principles. J Exp Bot 60:3615-3635
    • (2009) J Exp Bot , vol.60 , pp. 3615-3635
    • Sarkar, P.1    Bosneaga, E.2    Auer, M.3
  • 40
    • 43149093968 scopus 로고    scopus 로고
    • Cellular expansion and gene expression in the developing grape (Vitis vinifera L.)
    • 18421552 10.1007/s00709-008-0280-9
    • Schlosser J, Olsson N, Weis M, Reid K, Peng F, Lund S, Bowen P (2008) Cellular expansion and gene expression in the developing grape (Vitis vinifera L.). Protoplasma 232:255-265
    • (2008) Protoplasma , vol.232 , pp. 255-265
    • Schlosser, J.1    Olsson, N.2    Weis, M.3    Reid, K.4    Peng, F.5    Lund, S.6    Bowen, P.7
  • 41
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • 17488738 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 42
    • 34249054209 scopus 로고    scopus 로고
    • Recent proliferation and translocation of pollen group allergen genes in the maize genome
    • 1820917 17220362 10.1104/pp.106.092544
    • Valdivia ER, Sampedro J, Lamb JC, Chopra S, Cosgrove DJ (2007) Recent proliferation and translocation of pollen group allergen genes in the maize genome. Plant Physiol 143:1269-1281
    • (2007) Plant Physiol , vol.143 , pp. 1269-1281
    • Valdivia, E.R.1    Sampedro, J.2    Lamb, J.C.3    Chopra, S.4    Cosgrove, D.J.5
  • 43
    • 70349857854 scopus 로고    scopus 로고
    • Class B beta-expansins are needed for pollen separation and stigma penetration
    • 20033435 10.1007/s00497-009-0099-y
    • Valdivia ER, Stephenson AG, Durachko DM, Cosgrove DJ (2009) Class B beta-expansins are needed for pollen separation and stigma penetration. Sex Plant Reprod 22:141-152
    • (2009) Sex Plant Reprod , vol.22 , pp. 141-152
    • Valdivia, E.R.1    Stephenson, A.G.2    Durachko, D.M.3    Cosgrove, D.J.4
  • 46
    • 84872375909 scopus 로고    scopus 로고
    • A genome-wide analysis of the RNA helicase gene family in Solanum lycopersicum
    • 23111163 10.1016/j.gene.2012.10.053
    • Xu RR, Zhang SZ, Lu LT, Cao H, Zheng CC (2013) A genome-wide analysis of the RNA helicase gene family in Solanum lycopersicum. Gene 513:128-140
    • (2013) Gene , vol.513 , pp. 128-140
    • Xu, R.R.1    Zhang, S.Z.2    Lu, L.T.3    Cao, H.4    Zheng, C.C.5
  • 47
    • 58149293020 scopus 로고    scopus 로고
    • Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis
    • 2612031 19021904 10.1186/1471-2164-9-550
    • Xue T, Wang D, Zhang SZ, Ehlting J, Ni F, Jakab S, Zheng CC, Zhong Y (2008) Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis. BMC Genomics 9:550-570
    • (2008) BMC Genomics , vol.9 , pp. 550-570
    • Xue, T.1    Wang, D.2    Zhang, S.Z.3    Ehlting, J.4    Ni, F.5    Jakab, S.6    Zheng, C.C.7    Zhong, Y.8
  • 48
    • 33749536575 scopus 로고    scopus 로고
    • Crystal structure and activitie of EXPB1 (Zea m 1), a β-expansin and group-1 pollen allergen from maize
    • 1595409 16984999 10.1073/pnas.0605979103
    • Yennawar NH, Li LC, Dudzinski DM, Tabuchi A, Cosgrove DJ (2006) Crystal structure and activitie of EXPB1 (Zea m 1), a β-expansin and group-1 pollen allergen from maize. Proc Natl Acad Sci USA 103:14664-14671
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 14664-14671
    • Yennawar, N.H.1    Li, L.C.2    Dudzinski, D.M.3    Tabuchi, A.4    Cosgrove, D.J.5
  • 50
    • 84861479247 scopus 로고    scopus 로고
    • Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress
    • 22526429 10.1007/s00438-012-0687-7
    • Zhao T, Liang D, Wang P, Liu J, Ma F (2012) Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress. Mol Genet Genomics 287:423-436
    • (2012) Mol Genet Genomics , vol.287 , pp. 423-436
    • Zhao, T.1    Liang, D.2    Wang, P.3    Liu, J.4    Ma, F.5


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