-
1
-
-
33846252240
-
Genome-wide atlas of gene expression in the adult mouse brain
-
Lein ES, et al. (2007) Genome-wide atlas of gene expression in the adult mouse brain. Nature 445(7124):168-176.
-
(2007)
Nature
, vol.445
, Issue.7124
, pp. 168-176
-
-
Lein, E.S.1
-
2
-
-
77950376512
-
The genome of a songbird
-
Warren WC, et al. (2010) The genome of a songbird. Nature 464(7289):757-762.
-
(2010)
Nature
, vol.464
, Issue.7289
, pp. 757-762
-
-
Warren, W.C.1
-
3
-
-
0042209598
-
From gene networks to brain networks
-
Bota M, Dong HW, Swanson LW (2003) From gene networks to brain networks. Nat Neurosci 6(8):795-799.
-
(2003)
Nat Neurosci
, vol.6
, Issue.8
, pp. 795-799
-
-
Bota, M.1
Dong, H.W.2
Swanson, L.W.3
-
4
-
-
84898046594
-
Automated high-throughput registration for localizing 3D mouse brain gene expression using ITK. 2005 MICCAI open-source workshop
-
Ng L, Hawrylycz M, Haynor D (2005) Automated high-throughput registration for localizing 3D mouse brain gene expression using ITK. 2005 MICCAI Open-Source Workshop. Insight J, Available at http://hdl.handle.net/1926/15.
-
(2005)
Insight J
-
-
Ng, L.1
Hawrylycz, M.2
Haynor, D.3
-
5
-
-
38449118153
-
Insights from spatially mapped gene expression in the mouse brain
-
Sunkin SM, Hohmann JG (2007) Insights from spatially mapped gene expression in the mouse brain. Hum Mol Genet 16 (Spec No. 2):R209-R219.
-
(2007)
Hum Mol Genet
, vol.16
, Issue.SPEC NO. 2
-
-
Sunkin, S.M.1
Hohmann, J.G.2
-
6
-
-
79952481631
-
Digital atlasing and standardization in the mouse brain
-
Hawrylycz M, et al. (2011) Digital atlasing and standardization in the mouse brain. PLoS Comput Biol 7(2):e1001065.
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.2
-
-
Hawrylycz, M.1
-
7
-
-
70350223749
-
NeuroBlast: A 3D spatial homology search tool for gene expression
-
Ng L, et al. (2007) NeuroBlast: A 3D spatial homology search tool for gene expression. BMC Neurosci 8(Suppl 2):11.
-
(2007)
BMC Neurosci
, vol.8
, Issue.SUPPL. 2
, pp. 11
-
-
Ng, L.1
-
8
-
-
34547964832
-
Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain
-
Ng L, et al. (2007) Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain. IEEE/ACM Trans Comput Biol Bioinformatics 4(3):382-393.
-
(2007)
IEEE/ACM Trans Comput Biol Bioinformatics
, vol.4
, Issue.3
, pp. 382-393
-
-
Ng, L.1
-
9
-
-
46249132930
-
Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data
-
Lee CK, et al. (2008) Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data. Genome Biol 9(1):R23.
-
(2008)
Genome Biol
, vol.9
, Issue.1
-
-
Lee, C.K.1
-
10
-
-
60749125717
-
An anatomic gene expression atlas of the adult mouse brain
-
Ng L, et al. (2009) An anatomic gene expression atlas of the adult mouse brain. Nat Neurosci 12(3):356-362.
-
(2009)
Nat Neurosci
, vol.12
, Issue.3
, pp. 356-362
-
-
Ng, L.1
-
12
-
-
80053218338
-
Multi-scale correlation structure of gene expression in the brain
-
Hawrylycz M, et al. (2011) Multi-scale correlation structure of gene expression in the brain. Neural Netw 24(9):933-942.
-
(2011)
Neural Netw
, vol.24
, Issue.9
, pp. 933-942
-
-
Hawrylycz, M.1
-
14
-
-
29444452573
-
Molecular taxonomy of major neuronal classes in the adult mouse forebrain
-
Sugino K, et al. (2006) Molecular taxonomy of major neuronal classes in the adult mouse forebrain. Nat Neurosci 9(1):99-107.
-
(2006)
Nat Neurosci
, vol.9
, Issue.1
, pp. 99-107
-
-
Sugino, K.1
-
15
-
-
26444529541
-
Cell type-specific gene expression of midbrain dopaminergic neurons reveals molecules involved in their vulnerability and protection
-
Chung CY, et al. (2005) Cell type-specific gene expression of midbrain dopaminergic neurons reveals molecules involved in their vulnerability and protection. Hum Mol Genet 14(13):1709-1725.
-
(2005)
Hum Mol Genet
, vol.14
, Issue.13
, pp. 1709-1725
-
-
Chung, C.Y.1
-
16
-
-
12344252023
-
Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo
-
Arlotta P, et al. (2005) Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo. Neuron 45(2):207-221.
-
(2005)
Neuron
, vol.45
, Issue.2
, pp. 207-221
-
-
Arlotta, P.1
-
17
-
-
33749175091
-
Global transcriptome analysis of genetically identified neurons in the adult cortex
-
Rossner MJ, et al. (2006) Global transcriptome analysis of genetically identified neurons in the adult cortex. J Neurosci 26(39):9956-9966.
-
(2006)
J Neurosci
, vol.26
, Issue.39
, pp. 9956-9966
-
-
Rossner, M.J.1
-
18
-
-
55449107738
-
A translational profiling approach for the molecular characterization of CNS cell types
-
Heiman M, et al. (2008) A translational profiling approach for the molecular characterization of CNS cell types. Cell 135(4):738-748.
-
(2008)
Cell
, vol.135
, Issue.4
, pp. 738-748
-
-
Heiman, M.1
-
19
-
-
38149129457
-
A transcriptome database for astrocytes, neurons, and oligodendrocytes: A new resource for understanding brain development and function
-
Cahoy JD, et al. (2008) A transcriptome database for astrocytes, neurons, and oligodendrocytes: A new resource for understanding brain development and function. J Neurosci 28(1):264-278.
-
(2008)
J Neurosci
, vol.28
, Issue.1
, pp. 264-278
-
-
Cahoy, J.D.1
-
20
-
-
55449103144
-
Application of a translational profiling approach for the comparative analysis of CNS cell types
-
Doyle JP, et al. (2008) Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell 135(4):749-762.
-
(2008)
Cell
, vol.135
, Issue.4
, pp. 749-762
-
-
Doyle, J.P.1
-
21
-
-
66149174787
-
Transcriptional and electrophysiological maturation of neocortical fast-spiking GABAergic interneurons
-
Okaty BW, Miller MN, Sugino K, Hempel CM, Nelson SB (2009) Transcriptional and electrophysiological maturation of neocortical fast-spiking GABAergic interneurons. J Neurosci 29(21):7040-7052.
-
(2009)
J Neurosci
, vol.29
, Issue.21
, pp. 7040-7052
-
-
Okaty, B.W.1
Miller, M.N.2
Sugino, K.3
Hempel, C.M.4
Nelson, S.B.5
-
22
-
-
84874273509
-
Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain
-
Ko Y, et al. (2013) Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain. Proc Natl Acad Sci USA 110(8):3095-3100.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.8
, pp. 3095-3100
-
-
Ko, Y.1
-
23
-
-
84878883768
-
Neuron-enriched gene expression patterns are regionally anti-correlated with oligodendrocyte-enriched patterns in the adult mouse and human brain
-
Tan PPC, French L, Pavlidis P (2013) Neuron-enriched gene expression patterns are regionally anti-correlated with oligodendrocyte-enriched patterns in the adult mouse and human brain. Front Neurosci 7:5.
-
(2013)
Front Neurosci
, vol.7
, pp. 5
-
-
Tan, P.P.C.1
French, L.2
Pavlidis, P.3
-
24
-
-
84880765742
-
Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas
-
Grange P, Hawrylycz M, Mitra PP (2013) Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas. Quantitative Biology 1(1):91-100.
-
(2013)
Quantitative Biology
, vol.1
, Issue.1
, pp. 91-100
-
-
Grange, P.1
Hawrylycz, M.2
Mitra, P.P.3
-
25
-
-
84880774806
-
Co-expression profiling of autism genes in the mouse brain
-
Menashe I, Grange P, Larsen EC, Banerjee-Basu S, Mitra PP (2013) Co-expression profiling of autism genes in the mouse brain. PLoS Comput Biol 9(7):e1003128.
-
(2013)
PLoS Comput Biol
, vol.9
, Issue.7
-
-
Menashe, I.1
Grange, P.2
Larsen, E.C.3
Banerjee-Basu, S.4
Mitra, P.P.5
-
26
-
-
74149083446
-
Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy
-
Bohland JW, et al. (2010) Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy. Methods 50(2):105-112.
-
(2010)
Methods
, vol.50
, Issue.2
, pp. 105-112
-
-
Bohland, J.W.1
-
27
-
-
67749112023
-
Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus
-
Abbas AR, Wolslegel K, Seshasayee D, Modrusan Z, Clark HF (2009) Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus. PLoS ONE 4(7):e6098.
-
(2009)
PLoS ONE
, vol.4
, Issue.7
-
-
Abbas, A.R.1
Wolslegel, K.2
Seshasayee, D.3
Modrusan, Z.4
Clark, H.F.5
-
28
-
-
84868533629
-
Computational neuroanatomy and gene expression: Optimal sets of marker genes for brain regions
-
IEEE, Princeton, NJ
-
Grange P, Mitra PP (2012) Computational neuroanatomy and gene expression: Optimal sets of marker genes for brain regions. IEEE 2012 46th Annual Conference on Information Science and Systems (IEEE, Princeton, NJ). pp 1-6.
-
(2012)
IEEE 2012 46th Annual Conference on Information Science and Systems
, pp. 1-6
-
-
Grange, P.1
Mitra, P.P.2
-
29
-
-
70349637517
-
The brain atlas concordance problem: Quantitative comparison of anatomical parcellations
-
Bohland JW, Bokil H, Allen CB, Mitra PP (2009) The brain atlas concordance problem: Quantitative comparison of anatomical parcellations. PLoS ONE 4(9):e7200.
-
(2009)
PLoS ONE
, vol.4
, Issue.9
-
-
Bohland, J.W.1
Bokil, H.2
Allen, C.B.3
Mitra, P.P.4
-
32
-
-
0037140798
-
On counting and counting errors
-
Guillery RW (2002) On counting and counting errors. J Comp Neurol 447(1):1-7.
-
(2002)
J Comp Neurol
, vol.447
, Issue.1
, pp. 1-7
-
-
Guillery, R.W.1
-
33
-
-
0042426171
-
Interneuron Diversity series: Interneuron research-challenges and strategies
-
Mott DD, Dingledine R (2003) Interneuron Diversity series: Interneuron research-challenges and strategies. Trends Neurosci 26(9):484-488.
-
(2003)
Trends Neurosci
, vol.26
, Issue.9
, pp. 484-488
-
-
Mott, D.D.1
Dingledine, R.2
-
34
-
-
5044222497
-
Interneurons of the neocortical inhibitory system
-
Markram H, et al. (2004) Interneurons of the neocortical inhibitory system. Nat Rev Neurosci 5(10):793-807.
-
(2004)
Nat Rev Neurosci
, vol.5
, Issue.10
, pp. 793-807
-
-
Markram, H.1
-
35
-
-
79551520605
-
A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain
-
Okaty BW, Sugino K, Nelson SB (2011) A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain. PLoS ONE 6(1): e16493.
-
(2011)
PLoS ONE
, vol.6
, Issue.1
-
-
Okaty, B.W.1
Sugino, K.2
Nelson, S.B.3
-
37
-
-
84884913302
-
Sign-constrained least squares estimation for high-dimensional regression
-
Meinshausen N (2013) Sign-constrained least squares estimation for high-dimensional regression. Electron J Stat 7:1607-1631.
-
(2013)
Electron J Stat
, vol.7
, pp. 1607-1631
-
-
Meinshausen, N.1
-
39
-
-
33751234979
-
Isoperimetric partitioning: A new algorithm for graph partitioning
-
Grady L, Schwartz E (2006) Isoperimetric partitioning: A new algorithm for graph partitioning. SIAM J Sci Comput 27(6):1844-1866.
-
(2006)
SIAM J Sci Comput
, vol.27
, Issue.6
, pp. 1844-1866
-
-
Grady, L.1
Schwartz, E.2
-
40
-
-
78951492723
-
Biclustering of adverse drug events in FDAs spontaneous reporting system
-
Harpaz R, et al. (2011) Biclustering of adverse drug events in FDAs spontaneous reporting system. Clin Pharmacol Ther 89(2):243-250.
-
(2011)
Clin Pharmacol Ther
, vol.89
, Issue.2
, pp. 243-250
-
-
Harpaz, R.1
-
41
-
-
34250191844
-
Reactome: A knowledge base of biologic pathways and processes
-
Vastrik I, et al. (2007) Reactome: A knowledge base of biologic pathways and processes. Genome Biol 8(3):R39.
-
(2007)
Genome Biol
, vol.8
, Issue.3
-
-
Vastrik, I.1
-
42
-
-
0032988822
-
Analysis of dynamic brain imaging data
-
Mitra PP, Pesaran B (1999) Analysis of dynamic brain imaging data. Biophys J 76(2): 691-708.
-
(1999)
Biophys J
, vol.76
, Issue.2
, pp. 691-708
-
-
Mitra, P.P.1
Pesaran, B.2
-
43
-
-
84866518216
-
An anatomically comprehensive atlas of the adult human brain transcriptome
-
Hawrylycz MJ, et al. (2012) An anatomically comprehensive atlas of the adult human brain transcriptome. Nature 489(7416):391-399.
-
(2012)
Nature
, vol.489
, Issue.7416
, pp. 391-399
-
-
Hawrylycz, M.J.1
-
44
-
-
84876215104
-
-
Research, Inc, Version 2.0 beta. Accessed September 2012
-
Research, Inc. (2012) CVX: Matlab Software for Disciplined Convex Programming, Version 2.0 beta. Available at http://cvxr.com/cvx. Accessed September 2012.
-
(2012)
CVX: Matlab Software for Disciplined Convex Programming
-
-
-
45
-
-
36849072045
-
Graph implementations for nonsmooth convex programs. Recent Advances in Learning and Control (a tribute to M. Vidyasagar)
-
eds Blondel V, Boyd S, Kimura H (Springer, New York)
-
Grant M, Boyd S (2008) Graph implementations for nonsmooth convex programs. Recent Advances in Learning and Control (a tribute to M. Vidyasagar), Lecture Notes in Control and Information Sciences, eds Blondel V, Boyd S, Kimura H (Springer, New York), pp 95-110. Available at http://stanford.edu/-boyd/ graph-dcp.html.
-
(2008)
Lecture Notes in Control and Information Sciences
, pp. 95-110
-
-
Grant, M.1
Boyd, S.2
|