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Volumn 1, Issue 1, 2013, Pages 91-100

Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas

Author keywords

Adult Mouse Brain; Allen Brain; Allen Brain Atlas; Expression Energy; Voxel Space

Indexed keywords


EID: 84880765742     PISSN: 20954689     EISSN: 20954697     Source Type: Journal    
DOI: 10.1007/s40484-013-0011-5     Document Type: Review
Times cited : (10)

References (38)
  • 1
    • 0042209598 scopus 로고    scopus 로고
    • From gene networks to brain networks
    • PID: 12886225, COI: 1:CAS:528:DC%2BD3sXlslOis7w%3D
    • Bota, M., Dong, H.W. and Swanson, L.W. (2003) From gene networks to brain networks. Nat. Neurosci. 6, 795–799.
    • (2003) Nat. Neurosci. , vol.6 , pp. 795-799
    • Bota, M.1    Dong, H.W.2    Swanson, L.W.3
  • 3
    • 38449118153 scopus 로고    scopus 로고
    • Insights from spatially mapped gene expression in the mouse brain
    • Sunkin, S. M., Hohmann, J. G. (2007) Insights from spatially mapped gene expression in the mouse brain. Hum. Mol. Genet. 16, 2.
    • (2007) Hum. Mol. Genet. , vol.16 , pp. 2
    • Sunkin, S.M.1    Hohmann, J.G.2
  • 5
    • 34547964832 scopus 로고    scopus 로고
    • Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain
    • PID: 17666758, COI: 1:CAS:528:DC%2BD2sXhtVOgtLzK
    • Ng, L., Pathak, S. D., Kuan, C., Lau, C., Dong, H., et al. (2007) Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain. IEEE/ACM Trans. Comput. Biol. Bioinform. Jul–Sep 4(3), 382–393.
    • (2007) IEEE/ACM Trans. Comput. Biol. Bioinform. , vol.4 , Issue.3 , pp. 382-393
    • Ng, L.1    Pathak, S.D.2    Kuan, C.3    Lau, C.4    Dong, H.5
  • 6
    • 70350228331 scopus 로고    scopus 로고
    • The Allen Brain Atlas: 5 years and beyond
    • PID: 19826436, COI: 1:CAS:528:DC%2BD1MXht1GlsrnN
    • Jones, A. R., Overly, C. C. and Sunkin, S. M. (2009) The Allen Brain Atlas: 5 years and beyond. Nat. Rev. Neurosci. 10, 821–828.
    • (2009) Nat. Rev. Neurosci. , vol.10 , pp. 821-828
    • Jones, A.R.1    Overly, C.C.2    Sunkin, S.M.3
  • 10
    • 38949164506 scopus 로고    scopus 로고
    • Genes and (common) pathways underlying drug addiction
    • PID: 18179280
    • Li, C. Y., Mao, X. and Wei, L. (2008) Genes and (common) pathways underlying drug addiction. PLOS Comput. Biol. 4, e2.
    • (2008) PLOS Comput. Biol. , vol.4
    • Li, C.Y.1    Mao, X.2    Wei, L.3
  • 11
    • 49549111404 scopus 로고    scopus 로고
    • Systematic biological prioritization after a genome-wide association study: an application to nicotine dependence
    • PID: 18565990, COI: 1:CAS:528:DC%2BD1cXpslarsr8%3D
    • Saccone, S. F., Saccone, N. L., Swan, G. E., Madden, P. A. F., Goate, A. M., Rice, J. P. and Bierut, L. J. (2008) Systematic biological prioritization after a genome-wide association study: an application to nicotine dependence. Bioinformatics 24, 1805–1811.
    • (2008) Bioinformatics , vol.24 , pp. 1805-1811
    • Saccone, S.F.1    Saccone, N.L.2    Swan, G.E.3    Madden, P.A.F.4    Goate, A.M.5    Rice, J.P.6    Bierut, L.J.7
  • 12
  • 15
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • Zhang, B. and Horvath, S. (2005) A general framework for weighted gene co-expression network analysis. Stat. Appl. Genet. Mol. Biol. 4, e17.
    • (2005) Stat. Appl. Genet. Mol. Biol. , vol.4
    • Zhang, B.1    Horvath, S.2
  • 16
    • 44449145053 scopus 로고    scopus 로고
    • Analysis of the network of feeding neuroregulators using the Allen Brain Atlas
    • PID: 18457878, COI: 1:CAS:528:DC%2BD1cXms1Whtrg%3D
    • Olszewski, P. K., Cedernaes, J., Olsson, F., Levine, A. S. and Schiöth, H. B. (2008) Analysis of the network of feeding neuroregulators using the Allen Brain Atlas. Neurosci. Biobehav. Rev. 32, 945–956.
    • (2008) Neurosci. Biobehav. Rev. , vol.32 , pp. 945-956
    • Olszewski, P.K.1    Cedernaes, J.2    Olsson, F.3    Levine, A.S.4    Schiöth, H.B.5
  • 19
    • 42549114238 scopus 로고    scopus 로고
    • Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain
    • PID: 18366675
    • Lau, C., Ng, L., Thompson, C., Pathak, S., Kuan, L., Jones, A. and Hawrylycz, M. (2008) Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain. BMC Bioinformatics 9, 153.
    • (2008) BMC Bioinformatics , vol.9 , pp. 153
    • Lau, C.1    Ng, L.2    Thompson, C.3    Pathak, S.4    Kuan, L.5    Jones, A.6    Hawrylycz, M.7
  • 22
    • 0001790593 scopus 로고
    • Depth first search and linear graph algorithms
    • Tarjan, R. E. (1972) Depth first search and linear graph algorithms. SIAM J. Comput. 1, 146–160.
    • (1972) SIAM J. Comput. , vol.1 , pp. 146-160
    • Tarjan, R.E.1
  • 23
    • 74149083446 scopus 로고    scopus 로고
    • Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy
    • PID: 19733241, COI: 1:CAS:528:DC%2BC3cXotVyluw%3D%3D
    • Bohland, J. W., Bokil, H., Pathak, S. D., Lee, C. K., Ng, L., Lau, C., Kuan, C., Hawrylycz, M. and Mitra, P. P. (2010) Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy. Methods 50, 105–112.
    • (2010) Methods , vol.50 , pp. 105-112
    • Bohland, J.W.1    Bokil, H.2    Pathak, S.D.3    Lee, C.K.4    Ng, L.5    Lau, C.6    Kuan, C.7    Hawrylycz, M.8    Mitra, P.P.9
  • 28
    • 85042740798 scopus 로고    scopus 로고
    • (Oregon Health and Science University, Portland, OR 97239;)
    • Data can be retrieved from the ZEBrA database. (Oregon Health and Science University, Portland, OR 97239; http://www.zebrafinchatlas.org).
    • Data can be retrieved from the ZEBrA database
  • 29
    • 77955454185 scopus 로고    scopus 로고
    • Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways
    • PID: 20616000, COI: 1:CAS:528:DC%2BC3cXpt1Shuro%3D
    • Miller, J. A., Horvath, S. and Geschwind, D. H. (2010) Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways. Proc. Natl. Acad. Sci. USA 107, 12698–12703.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 12698-12703
    • Miller, J.A.1    Horvath, S.2    Geschwind, D.H.3
  • 31
    • 38149129457 scopus 로고    scopus 로고
    • A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function
    • PID: 18171944, COI: 1:CAS:528:DC%2BD1cXmtV2ltw%3D%3D
    • Cahoy, J. D., Emery, B., Kaushal, A., Foo, L. C., Zamanian, J. L., Christopherson, K. S., Xing, Y., Lubischer, J. L., Krieg, P. A., Krupenko, S. A., et al. (2008) A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function. J. Neurosci. 28, 264–278.
    • (2008) J. Neurosci. , vol.28 , pp. 264-278
    • Cahoy, J.D.1    Emery, B.2    Kaushal, A.3    Foo, L.C.4    Zamanian, J.L.5    Christopherson, K.S.6    Xing, Y.7    Lubischer, J.L.8    Krieg, P.A.9    Krupenko, S.A.10
  • 32
    • 55449103144 scopus 로고    scopus 로고
    • Application of a translational profiling approach for the comparative analysis of CNS cell types
    • PID: 19013282, COI: 1:CAS:528:DC%2BD1cXhsVCls7vL
    • Doyle, J. P., Dougherty, J. D., Heiman, M., Schmidt, E. F., Stevens, T. R., Ma, G., Bupp, S., Shrestha, P., Shah, R. D., Doughty, M. L., et al. (2008) Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell 135, 749–762.
    • (2008) Cell , vol.135 , pp. 749-762
    • Doyle, J.P.1    Dougherty, J.D.2    Heiman, M.3    Schmidt, E.F.4    Stevens, T.R.5    Ma, G.6    Bupp, S.7    Shrestha, P.8    Shah, R.D.9    Doughty, M.L.10
  • 33
    • 26444529541 scopus 로고    scopus 로고
    • Cell type-specific gene expression of midbrain dopaminergic neurons reveals molecules involved in their vulnerability and protection
    • PID: 15888489, COI: 1:CAS:528:DC%2BD2MXmvV2htL8%3D
    • Chung, C. Y., Seo, H., Sonntag, K. C., Brooks, A., Lin, L. and Isacson, O. (2005) Cell type-specific gene expression of midbrain dopaminergic neurons reveals molecules involved in their vulnerability and protection. Hum. Mol. Genet. 14, 1709–1725.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 1709-1725
    • Chung, C.Y.1    Seo, H.2    Sonntag, K.C.3    Brooks, A.4    Lin, L.5    Isacson, O.6
  • 34
    • 12344252023 scopus 로고    scopus 로고
    • Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo
    • PID: 15664173, COI: 1:CAS:528:DC%2BD2MXhtFOrt7o%3D
    • Arlotta, P., Molyneaux, B. J., Chen, J., Inoue, J., Kominami, R. and Macklis, J. D. (2005) Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo. Neuron 45, 207–221.
    • (2005) Neuron , vol.45 , pp. 207-221
    • Arlotta, P.1    Molyneaux, B.J.2    Chen, J.3    Inoue, J.4    Kominami, R.5    Macklis, J.D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.