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Volumn 82, Issue 5, 2014, Pages 785-793

The stability of Taq DNA polymerase results from a reduced entropic folding penalty; identification of other thermophilic proteins with similar folding thermodynamics

Author keywords

Entropic barrier; Gibbs Helmholtz; Heat capacity; Klenow; Protein folding; Taq polymerase

Indexed keywords

DNA POLYMERASE; TAQ POLYMERASE;

EID: 84898038119     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.24458     Document Type: Article
Times cited : (17)

References (36)
  • 1
    • 0024560060 scopus 로고
    • Isolation, characterization, and expression in Escherichia coli of the DNA polymerase gene from Thermus aquaticus
    • Lawyer FC, Stoffel S, Saiki RK, Myambo K, Drummond R, Gelfand DH. Isolation, characterization, and expression in Escherichia coli of the DNA polymerase gene from Thermus aquaticus. J Biol Chem 1989;264:6427-6437.
    • (1989) J Biol Chem , vol.264 , pp. 6427-6437
    • Lawyer, F.C.1    Stoffel, S.2    Saiki, R.K.3    Myambo, K.4    Drummond, R.5    Gelfand, D.H.6
  • 4
    • 0029056926 scopus 로고
    • Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability
    • Korolev S, Nayal M, Barnes WM, Di Cera E, Waksman G. Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability. Proc Natl Acad Sci U S A 1995;92:9264-9268.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 9264-9268
    • Korolev, S.1    Nayal, M.2    Barnes, W.M.3    Di Cera, E.4    Waksman, G.5
  • 6
    • 0035092271 scopus 로고    scopus 로고
    • Thermophilic adaptation of proteins
    • Sterner R, Liebl W. Thermophilic adaptation of proteins. Crit Rev Biochem Mol 2001;36:39-106.
    • (2001) Crit Rev Biochem Mol , vol.36 , pp. 39-106
    • Sterner, R.1    Liebl, W.2
  • 7
    • 0021984004 scopus 로고
    • Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP
    • Ollis DL, Brick P, Hamlin R, Xuong NG, Steitz TA. Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature 1985;313:762-766.
    • (1985) Nature , vol.313 , pp. 762-766
    • Ollis, D.L.1    Brick, P.2    Hamlin, R.3    Xuong, N.G.4    Steitz, T.A.5
  • 10
    • 33745726737 scopus 로고    scopus 로고
    • Lessons in stability from thermophilic proteins
    • Razvi A, Scholtz JM. Lessons in stability from thermophilic proteins. Protein Sci 2006;15:1569-1578.
    • (2006) Protein Sci , vol.15 , pp. 1569-1578
    • Razvi, A.1    Scholtz, J.M.2
  • 11
    • 0017706821 scopus 로고
    • Reversible thermal unfolding of thermostable phosphoglycerate kinase. Thermostability associated with mean zero enthalpy change
    • Nojima H, Ikai A, Oshima T, Noda H. Reversible thermal unfolding of thermostable phosphoglycerate kinase. Thermostability associated with mean zero enthalpy change. J Mol Biol 1977;116:429-442.
    • (1977) J Mol Biol , vol.116 , pp. 429-442
    • Nojima, H.1    Ikai, A.2    Oshima, T.3    Noda, H.4
  • 12
    • 1042298814 scopus 로고    scopus 로고
    • Mechanism of thermostabilization in a designed cold shock protein with optimized surface electrostatic interactions
    • Makhatadze GI, Loladze VV, Gribenko AV, Lopez MM. Mechanism of thermostabilization in a designed cold shock protein with optimized surface electrostatic interactions. J Mol Biol 2004;336:929-942.
    • (2004) J Mol Biol , vol.336 , pp. 929-942
    • Makhatadze, G.I.1    Loladze, V.V.2    Gribenko, A.V.3    Lopez, M.M.4
  • 13
    • 0037458742 scopus 로고    scopus 로고
    • Salt dependence of DNA binding by Thermus aquaticus and Escherichia coli DNA polymerases
    • Datta K, LiCata VJ. Salt dependence of DNA binding by Thermus aquaticus and Escherichia coli DNA polymerases. J Biol Chem 2003;278:5694-5701.
    • (2003) J Biol Chem , vol.278 , pp. 5694-5701
    • Datta, K.1    LiCata, V.J.2
  • 14
    • 0023697408 scopus 로고
    • Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants
    • Santoro MM, Bolen DW. Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants. Biochemistry 1988;27:8063-8068.
    • (1988) Biochemistry , vol.27 , pp. 8063-8068
    • Santoro, M.M.1    Bolen, D.W.2
  • 15
    • 0031471216 scopus 로고    scopus 로고
    • Overexpression of a glutamate receptor (GluR2) ligand binding domain in Escherichia coli: application of a novel protein folding screen
    • Chen GQ, Gouaux E. Overexpression of a glutamate receptor (GluR2) ligand binding domain in Escherichia coli: application of a novel protein folding screen. Proc Natl Acad Sci U S A 1997;94:13431-13436.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 13431-13436
    • Chen, G.Q.1    Gouaux, E.2
  • 16
    • 78650950740 scopus 로고    scopus 로고
    • Analysis of free energy versus temperature curves in protein folding and macromolecular interactions
    • LiCata VJ, Liu CC. Analysis of free energy versus temperature curves in protein folding and macromolecular interactions. Method Enzymol 2011;488:219-238.
    • (2011) Method Enzymol , vol.488 , pp. 219-238
    • LiCata, V.J.1    Liu, C.C.2
  • 17
    • 0014722597 scopus 로고
    • Enthalpy-entropy compensation phenomena in water solutions of proteins and small molecules: a ubiquitous property of water
    • Lumry R, Rajender S. Enthalpy-entropy compensation phenomena in water solutions of proteins and small molecules: a ubiquitous property of water. Biopolymers 1970;9:1125-1227.
    • (1970) Biopolymers , vol.9 , pp. 1125-1227
    • Lumry, R.1    Rajender, S.2
  • 18
    • 0141567644 scopus 로고    scopus 로고
    • Comparative thermal denaturation of Thermus aquaticus and Escherichia coli type 1 DNA polymerases
    • Karantzeni I, Ruiz C, Liu CC, Licata VJ. Comparative thermal denaturation of Thermus aquaticus and Escherichia coli type 1 DNA polymerases. Biochem J 2003;374:785-792.
    • (2003) Biochem J , vol.374 , pp. 785-792
    • Karantzeni, I.1    Ruiz, C.2    Liu, C.C.3    Licata, V.J.4
  • 19
    • 0035980242 scopus 로고    scopus 로고
    • Thermodynamic basis for the increased thermostability of CheY from the hyperthermophile Thermotoga maritima
    • Deutschman WA, Dahlquist FW. Thermodynamic basis for the increased thermostability of CheY from the hyperthermophile Thermotoga maritima. Biochemistry 2001;40:13107-13113.
    • (2001) Biochemistry , vol.40 , pp. 13107-13113
    • Deutschman, W.A.1    Dahlquist, F.W.2
  • 20
    • 0033596902 scopus 로고    scopus 로고
    • A thermodynamic comparison of mesophilic and thermophilic ribonucleases H
    • Hollien J, Marqusee S. A thermodynamic comparison of mesophilic and thermophilic ribonucleases H. Biochemistry 1999;38:3831-3836.
    • (1999) Biochemistry , vol.38 , pp. 3831-3836
    • Hollien, J.1    Marqusee, S.2
  • 22
    • 16244366490 scopus 로고    scopus 로고
    • Electrostatic interactions contribute to reduced heat capacity change of unfolding in a thermophilic ribosomal protein L30e
    • Lee CF, Allen MD, Bycroft M, Wong KB. Electrostatic interactions contribute to reduced heat capacity change of unfolding in a thermophilic ribosomal protein L30e. J Mol Biol 2005;348:419-431.
    • (2005) J Mol Biol , vol.348 , pp. 419-431
    • Lee, C.F.1    Allen, M.D.2    Bycroft, M.3    Wong, K.B.4
  • 24
    • 0028485627 scopus 로고
    • Protein stability effects of a complete set of alanine substitutions in are repressor
    • Milla ME, Brown BM, Sauer RT. Protein stability effects of a complete set of alanine substitutions in are repressor. Nat Struct Biol 1994;1:518-523.
    • (1994) Nat Struct Biol , vol.1 , pp. 518-523
    • Milla, M.E.1    Brown, B.M.2    Sauer, R.T.3
  • 25
    • 41149156045 scopus 로고    scopus 로고
    • Thermodynamic and kinetic determinants of Thermotoga maritima cold shock protein stability: a structural and dynamic analysis
    • Motono C, Gromiha MM, Kumar S. Thermodynamic and kinetic determinants of Thermotoga maritima cold shock protein stability: a structural and dynamic analysis. Proteins 2008;71:655-669.
    • (2008) Proteins , vol.71 , pp. 655-669
    • Motono, C.1    Gromiha, M.M.2    Kumar, S.3
  • 26
    • 0035709685 scopus 로고    scopus 로고
    • High thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus resulting from low ΔCp of unfolding
    • Motono C, Oshima T, Yamagishi A. High thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus resulting from low ΔCp of unfolding. Protein Eng 2001;14:961-966.
    • (2001) Protein Eng , vol.14 , pp. 961-966
    • Motono, C.1    Oshima, T.2    Yamagishi, A.3
  • 27
    • 67649607259 scopus 로고    scopus 로고
    • Structure, stability, and folding of ribonuclease H1 from the moderately thermophilic Chlorobium tepidum: comparison with thermophilic and mesophilic homologues
    • Ratcliff K, Corn J, Marqusee S. Structure, stability, and folding of ribonuclease H1 from the moderately thermophilic Chlorobium tepidum: comparison with thermophilic and mesophilic homologues. Biochemistry 2009;48:5890-5898.
    • (2009) Biochemistry , vol.48 , pp. 5890-5898
    • Ratcliff, K.1    Corn, J.2    Marqusee, S.3
  • 28
    • 0034825542 scopus 로고    scopus 로고
    • Comparative analyses of the conformational stability of a hyperthermophilic protein and its mesophilic counterpart
    • Shiraki K, Nishikori S, Fujiwara S, Hashimoto H, Kai Y, Takagi M, Imanaka T. Comparative analyses of the conformational stability of a hyperthermophilic protein and its mesophilic counterpart. Eur J Biochem 2001;268:4144-4150.
    • (2001) Eur J Biochem , vol.268 , pp. 4144-4150
    • Shiraki, K.1    Nishikori, S.2    Fujiwara, S.3    Hashimoto, H.4    Kai, Y.5    Takagi, M.6    Imanaka, T.7
  • 29
    • 13844267500 scopus 로고    scopus 로고
    • The HPr proteins from the thermophile Bacillus stearothermophilus can form domain-swapped dimers
    • Sridharan S, Razvi A, Scholtz JM, Sacchettini JC. The HPr proteins from the thermophile Bacillus stearothermophilus can form domain-swapped dimers. J Mol Biol 2005;346:919-931.
    • (2005) J Mol Biol , vol.346 , pp. 919-931
    • Sridharan, S.1    Razvi, A.2    Scholtz, J.M.3    Sacchettini, J.C.4
  • 30
    • 4544380515 scopus 로고    scopus 로고
    • Thermal and conformational stability of Ssh10b protein from archaeon Sulfolobus shibattae
    • Xu S, Oin SB, Pan XM. Thermal and conformational stability of Ssh10b protein from archaeon Sulfolobus shibattae. Biochem J 2004;382:433-440.
    • (2004) Biochem J , vol.382 , pp. 433-440
    • Xu, S.1    Oin, S.B.2    Pan, X.M.3
  • 31
    • 0035960641 scopus 로고    scopus 로고
    • Thermodynamic differences among homologous thermophilic and mesophilic proteins
    • Kumar S, Tsai CJ, Nussinov R. Thermodynamic differences among homologous thermophilic and mesophilic proteins. Biochemistry 2001;40:14152-14165.
    • (2001) Biochemistry , vol.40 , pp. 14152-14165
    • Kumar, S.1    Tsai, C.J.2    Nussinov, R.3
  • 33
    • 80052449370 scopus 로고    scopus 로고
    • How do thermophilic proteins and proteomes withstand high temperature?
    • Sawle L, Ghosh K. How do thermophilic proteins and proteomes withstand high temperature? Biophys J 2011;101:217-227.
    • (2011) Biophys J , vol.101 , pp. 217-227
    • Sawle, L.1    Ghosh, K.2
  • 34
    • 0029806946 scopus 로고    scopus 로고
    • Perturbations of the denatured state ensemble: modeling their effects on protein stability and folding kinetics
    • Wrabl JO, Shortle D. Perturbations of the denatured state ensemble: modeling their effects on protein stability and folding kinetics. Protein Sci 1996;5:2343-2352.
    • (1996) Protein Sci , vol.5 , pp. 2343-2352
    • Wrabl, J.O.1    Shortle, D.2
  • 35
    • 0023430560 scopus 로고
    • Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding
    • Matthews BW, Nicholson H, Becktel WJ. Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding. Proc Natl Acad Sci U S A 1987;84:6663-6667.
    • (1987) Proc Natl Acad Sci U S A , vol.84 , pp. 6663-6667
    • Matthews, B.W.1    Nicholson, H.2    Becktel, W.J.3
  • 36
    • 0025794278 scopus 로고
    • Protein stability: electrostatics and compact denatured states
    • Stigter D, Alonso DO, Dill KA. Protein stability: electrostatics and compact denatured states. Proc Natl Acad Sci U S A 1991;88:4176-4180.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , pp. 4176-4180
    • Stigter, D.1    Alonso, D.O.2    Dill, K.A.3


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