Molecular characterization of OP354-like P[8] (P[8]b subtype) human rotaviruses a species isolated in Japan

Journal of Medical Virology

Volumn 84, Issue 4, 2012, Pages 697-704

  Kuzuya, Mitsutaka ^a   Fujii, Ritsushi ^a   Hamano, Masako ^a   Kida, Kouji ^a   Kanadani, Tomohisa ^b   Nishimura, Keiko ^b   Kishimoto, Toshio ^a  

^a Okayama Prefectural Institute for Environmental Science and Public Health   (Japan)

^b NATIONAL HOSPITAL ORGANIZATION   (Japan)

Author keywords

Japan; Nucleotide sequence; P 8 b subtype; Phylogenetic analysis; Species A rotaviruses

Indexed keywords

NONSTRUCTURAL PROTEIN 4; PROTEIN VP4; PROTEIN VP6; PROTEIN VP7;

ARTICLE; ASIAN; CONTROLLED STUDY; GENE EXPRESSION; GENETIC REASSORTMENT; GENOTYPE; HUMAN; HUMAN ROTAVIRUS; HUMAN ROTAVIRUS A; INDIA; JAPAN; JAPANESE; MOLECULAR BIOLOGY; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS INFECTION; UNINDEXED SEQUENCE; VIRUS GENE; VIRUS ISOLATION; VIRUS LOAD; VIRUS STRAIN;

ADOLESCENT; CHILD; CHILD, PRESCHOOL; CLUSTER ANALYSIS; FEMALE; GENES, VIRAL; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; JAPAN; MALE; MOLECULAR SEQUENCE DATA; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL PROTEINS;

CERCOPITHECINE HERPESVIRUS 1; ROTAVIRUS;

EID: 84856849736     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23224     Document Type: Article

References (36)

1. Ball LA. 2005. In: The universal taxonomy of viruses in theory and practice, Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA, editors. Virus taxonomy: Eight report of the international committee on taxonomy of viruses. Amsterdam/Holland: Elsevier/Academic Press, pp 3- 8.
2. Cashman O, Collins PJ, Lennon G, Cryan B, Martella V, Fanning S, Staines A, O'Shea H. 2011. Molecular characterization of group A rotaviruses detected in children with gastroenteritis in Ireland in 2006-2009. Epidemiol Infect 14: 1- 13.
3. Cunliffe NA, Gondwe JS, Graham SM, Thindwa BDM, Dove W, Broadhead RL, Molyneux ME, Hart CA. 2001. Rotavirus strain diversity in Blantyre, Malawi, from 1977 to 1999. J Clin Microbiol 39: 836- 843.
4. Dennehy PH. 2008. Rotavirus vaccine: An overview. Clin Microbiol Rev 21: 198- 208.
5. Estes MK, Kapikian AZ. 2007. In: Rotaviruses, Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology 5th edn. Philadelphia: Lippincott Williams & Wilkins, pp 1917- 1974.
6. Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Banyai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI. 2005. Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs. J Infect Dis 192: S146- S159.
7. Ghosh S, Paul SK, Yamamoto D, Nagashima S, Kobayashi N. 2011. Full genomic analyses of human rotavirus strains possessing the rare P[8]b VP4 subtype. Infect Genet Evol 11: 1481- 1486.
8. Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28: 276- 282.
9. Higgins DG, Thompson JD, Gibson TJ. 1996. Using CLUSTAL for multiple sequence alignments. Methods Enzymol 266: 383- 402.
10. Hull JJ, Teel EN, Kerin TK, Freeman MM, Esona MD, Gentsch JR, Cortese MM, Parashar UD, Glass RI, Bowen MD. National Rotavirus Strain Surveillance System. 2011. United States rotavirus strain surveillance from 2005 to 2008: Genotype prevalence before and after vaccine introduction. Pediatr Infect Dis J 30: S42- S47.
11. Iturriza-Gómara M, Green J, Brown DW, Desselberger U, Gray JJ. 2000. Diversity within the VP4 gene of rotavirus P[8] strains: Implications for reverse transcription-PCR genotyping. J Clin Microbiol 38: 898- 901.
12. Iturriza-Gómara M, Dallman T, Bányai K, Böttiger B, Buesa J, Diedrich S, Fiore L, Johansen K, Koopmans M, Korsun N, Koukou D, Kroneman A, László B, Lappalainen M, Maunula L, Marques AM, Matthijnssens J, Midgley S, Mladenova Z, Nawaz S, Poljsak-Prijatelj M, Pothier P, Ruggeri FM, Sanchez-Fauquier A, Steyer A, Sidaraviciute-Ivaskeviciene I, Syriopoulou V, Tran AN, Usonis V, Ranst VAN M, DE Rougemont A, Gray J. 2011. Rotavirus genotypes co-circulating in Europe between 2006 and 2009 as determined by EuroRotaNet, a pan-European collaborative strain surveillance network. Epidemiol Infect 139: 895- 909.
13. Larralde G, Li BG, Kapikian AZ, Gorziglia M. 1991. Serotypespecific epitope(s) present on the VP8 subunit of rotavirus VP4 protein. J Virol 65: 3213- 3218.
14. Larralde G, Gorziglia M. 1992. Distribution of conserved and specific epitopes on the VP8 subunit of rotavirus VP4. J Virol 66: 7438- 7443.
15. Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo EA, Iturriza-Gómara M, Maes P, Patton JT, Rahman M, Ranst MV. 2008. Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82: 3204- 3219.
16. Matthijnssens J, Martella V, Van Ranst M. 2010. Priority paper evaluation: Genomic evolution, host-species barrier, reassortment and classification of rotaviruses. Future Virol 5: 385- 390.
17. Matthijnssens J, Ciarlet M, McDonald SM, Attoui H, Bányai K, Brister JR, Buesa J, Esona MD, Estes MK, Gentsch JR, Iturriza-Gómara M, Johne R, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Parreño V, Rahman M, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Patton JT, Desselberger U, Van Ranst M. 2011. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156: 1397- 1413.
18. Nagashima S, Kobayashi N, Paul SK, Alam MM, Chawla-Sarkar M, Krishnan T. 2009. Characterization of full-length VP4 genes of OP354-like P[8] human rotavirus strains detected in Bangladesh representing a novel P[8] subtype. Arch Virol 154: 1223- 1231.
19. Nagashima S, Kobayashi N, Paul SK, Ghosh S, Chawla-Sarkar M, Hossain MA, Krishnan T. 2010. Identification of P[8]b subtype in OP354-like human rotavirus strains by a modified RT-PCR method. Jpn J Infect Dis 63: 208- 211.
20. Nguyen TA, Hoang LP, Pham LD, Hoang KT, Okitsu S, Mizuguchi M, Ushijima H. 2008. Use of sequence analysis of the VP4 gene to classify recent Vietnamese rotavirus isolates. Clin Microbiol Infect 14: 235- 241.
21. Parashar UD, Burton A, Lanata C, Boschi-Pinto C, Shibuya K, Steele D, Birmingham M, Glass RI. 2009. Global mortality associated with rotavirus disease among children in 2004. J Infect Dis 200: S9- S15.
22. Paul SK, Kobayashi N, Nagashima S, Ishino M, Watanabe S, Alam MM, Ahmed MU, Hossain MA, Naik TN. 2008. Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: Evidence for a close relationship between rotaviruses from children and adults. Arch Virol 153: 1999- 2012.
23. Phan TG, Khamrin P, Quang TD, Dey SK, Takanashi S, Okitsu S, Maneekarn N, Ushijima H. 2007a. Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan. J Virol 81: 4645- 4653.
24. Phan TG, Trinh QD, Khamrin P, Kaneshi K, Ueda Y, Nakaya S, Nishimura S, Sugita K, Nishimura T, Yamamoto A, Takanashi S, Yagyu F, Okitsu S, Ushijima H. 2007b. Emergence of new variant rotavirus G3 among infants and children with acute gastroenteritis in Japan during 2003-2004. Clin Lab 53: 41- 48.
25. Pietsch C, Schuster V, Liebert UG. 2011. A hospital based study on inter- and intragenotypic diversity of human rotavirus A VP4 and VP7 gene segments, Germany. J Clin Virol 50: 136- 141.
26. Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gómara M, Iftekharuddin N, Azim T, Van Ranst M. 2007. Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol 81: 2382- 2390.
27. Ramig RF, Ciarlet M, Mertens PPC, Dermody TS. 2005. In: Rotavirus, Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA, editors. Virus taxonomy: Eight report of the international committee on taxonomy of viruses. Amsterdam/Holland: Elsevier/Academic Press, pp 484- 496.
28. Reidy N, O'Halloran F, Fanning S, Cryan B, O'Shea H. 2005. Emergence of G3 and G9 rotavirus and increased incidence of mixed infections in the southern region of Ireland 2001-2004. J Med Virol 77: 571- 578.
29. Samajdar S, Ghosh S, Dutta D, Chawla-Sarkar M, Kobayashi N, Naik TN. 2008. Human group A rotavirus P[8] Hun9-like and rare OP354-like strains are circulating among diarrhoeic children in Eastern India. Arch Virol 153: 1933- 1936.
30. Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15: 29- 56.
31. Tamura T, Nishikawa M, Anh DD, Suzuki H. 2010. Molecular epidemiological study of rotavirus and norovirus infection among children with acute gastroenteritis in Nha Trang, Vietnam, December 2005-June 2006. Jpn J Infect Dis 63: 405- 411.
32. Theamboonlers A, Bhattarakosol P, Chongsrisawat V, Sungkapalee T, Wutthirattanakowit N, Poovorawan Y. 2008. Molecular characterization of group A human rotaviruses in Bangkok and Buriram, Thailand during 2004-2006 reveals the predominance of G1P[8], G9P[8] and a rare G3P[19] strain. Virus Genes 36: 289- 298.
33. Trinh QD, Pham NT, Nguyen TA, Phan TG, Khamrin P, Yan H, Hoang PL, Maneekarn N, Li Y, Kozlov V, Kozlov A, Okitsu S, Ushijima H. 2007. Amino acid substitutions in the VP7 protein of human rotavirus G3 isolated in China, Russia, Thailand, and Vietnam during 2001-2004. J Med Virol 79: 1611- 1616.
34. World Health Organization. 2011. Rotavirus surveillance worldwide - 2009. Wkly Epidemiol Rec 86: 174- 176.
35. Wu H, Taniguchi K, Wakasugi F, Ukae S, Chiba S, Ohseto M, Hasegawa A, Urasawa T, Urasawa S. 1994. Survey on the distribution of the gene 4 alleles of human rotaviruses by polymerase chain reaction. Epidemiol Infect 112: 615- 622.
36. Yoshinaga M, Phan TG, Nguyen TA, Yan H, Yagyu F, Okitsu S, Müller WE, Ushijima H. 2006. Changing distribution of group A rotavirus G-types and genetic analysis of G9 circulating in Japan. Arch Virol 151: 183- 192.