메뉴 건너뛰기




Volumn 2014, Issue 1, 2014, Pages

DoReMi: Context-based prioritization of linear motif matches

Author keywords

Linear motifs; Prediction method; Protein interaction network; Web server

Indexed keywords

SUMO PROTEIN;

EID: 84897939678     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.315     Document Type: Article
Times cited : (6)

References (26)
  • 1
  • 2
    • 77954267294 scopus 로고    scopus 로고
    • SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs
    • Davey NE, Haslam NJ, Shields DC, Edwards RJ. 2010. SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs. Nucleic Acids Research 38(suppl 2):W534-W539
    • (2010) Nucleic Acids Research , vol.38 , Issue.SUPPL. 2
    • Davey, N.E.1    Haslam, N.J.2    Shields, D.C.3    Edwards, R.J.4
  • 3
  • 5
    • 70349996473 scopus 로고    scopus 로고
    • ANCHOR: web server for predicting protein binding regions in disordered proteins
    • Doszt́anyi Z,Ḿesźaros B, Simon I. 2009. ANCHOR: web server for predicting protein binding regions in disordered proteins. Bioinformatics 25(20):2745-2746
    • (2009) Bioinformatics , vol.25 , Issue.20 , pp. 2745-2746
    • Doszt́anyi, Z.1    Ḿesźaros, B.2    Simon, I.3
  • 7
    • 84861175619 scopus 로고    scopus 로고
    • Profile-based short linear protein motif discovery
    • Haslam NJ, Shields DC. 2012. Profile-based short linear protein motif discovery. BMC Bioinformatics 13(1):104
    • (2012) BMC Bioinformatics , vol.13 , Issue.1 , pp. 104
    • Haslam, N.J.1    Shields, D.C.2
  • 10
    • 78650821937 scopus 로고    scopus 로고
    • Large-scale discovery and characterization of protein regulatory motifs in eukaryotes
    • Lieber DS, Elemento O, Tavazoie S. 2010. Large-scale discovery and characterization of protein regulatory motifs in eukaryotes. PLoS ONE 5(12):e14444
    • (2010) PLoS ONE , vol.5 , Issue.12
    • Lieber, D.S.1    Elemento, O.2    Tavazoie, S.3
  • 11
    • 77956625920 scopus 로고    scopus 로고
    • (R)evolution of complex regulatory systems
    • Linding R. 2010. (R)evolution of complex regulatory systems. Science Signaling 3(127):eg4
    • (2010) Science Signaling , vol.3 , Issue.127
    • Linding, R.1
  • 18
    • 0042622251 scopus 로고    scopus 로고
    • Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs
    • Obenauer JC, Cantley LC, Yaffe MB. 2003. Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Research 31(13):3635-3641
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3635-3641
    • Obenauer, J.C.1    Cantley, L.C.2    Yaffe, M.B.3
  • 19
    • 84880708227 scopus 로고    scopus 로고
    • A structure based algorithm for improving motifs prediction
    • Ngom A, Formenti E, Hao J-K, Zhao X-M, Laarhoven T, eds. Berlin, Heidelberg: Springer Berlin Heidelberg
    • Pathak S, Kundeti VK, Schiller MR, Rajasekaran S. 2013. A structure based algorithm for improving motifs prediction. In: Ngom A, Formenti E, Hao J-K, Zhao X-M, Laarhoven T, eds. Pattern recognition in bioinformatics, vol. 7986. Berlin, Heidelberg: Springer Berlin Heidelberg, 242-252
    • (2013) Pattern recognition in bioinformatics , vol.7986 , pp. 242-252
    • Pathak, S.1    Kundeti, V.K.2    Schiller, M.R.3    Rajasekaran, S.4
  • 20
    • 0031055372 scopus 로고    scopus 로고
    • Evidence for PDZ domains in bacteria, yeast, and plants
    • Ponting CP. 1997. Evidence for PDZ domains in bacteria, yeast, and plants. Protein Science 6(2):464-468
    • (1997) Protein Science , vol.6 , Issue.2 , pp. 464-468
    • Ponting, C.P.1
  • 22
    • 0043122980 scopus 로고    scopus 로고
    • SIRW: a web server for the simple indexing and retrieval system that combines sequence motif searches with keyword searches
    • Ramu C. 2003. SIRW: a web server for the simple indexing and retrieval system that combines sequence motif searches with keyword searches. Nucleic Acids Research 31(13):3771-3774
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3771-3774
    • Ramu, C.1
  • 23
    • 67650720512 scopus 로고    scopus 로고
    • Systematic study of protein sumoylation: development of a site-specific predictor of SUMOsp 2.0
    • Ren J, Gao X, Jin C, Zhu M,Wang X, Shaw A,Wen L, Yao X, Xue Y. 2009. Systematic study of protein sumoylation: development of a site-specific predictor of SUMOsp 2.0. Proteomics 9(12):3409-3412
    • (2009) Proteomics , vol.9 , Issue.12 , pp. 3409-3412
    • Ren, J.1    Gao, X.2    Jin, C.3    Zhu, M.4    Wang, X.5    Shaw, A.6    Wen, L.7    Yao, X.8    Xue, Y.9
  • 25
    • 84864465529 scopus 로고    scopus 로고
    • iELM-a web server to explore short linear motif-mediated interactions
    • Weatheritt R, Jehl P. 2012. iELM-a web server to explore short linear motif-mediated interactions. Nucleic Acids Research 40(W1):W364-W369
    • (2012) Nucleic Acids Research , vol.40 , Issue.W1
    • Weatheritt, R.1    Jehl, P.2
  • 26
    • 82355184452 scopus 로고    scopus 로고
    • Phosphorylation of a PDZ domain extension modulates binding affinity and interdomain interactions in postsynaptic density-95 (PSD-95) protein, a membrane-associated guanylate kinase (MAGUK)
    • Zhang J, Petit CM, King DS, Lee AL. 2011. Phosphorylation of a PDZ domain extension modulates binding affinity and interdomain interactions in postsynaptic density-95 (PSD-95) protein, a membrane-associated guanylate kinase (MAGUK). The Journal of Biological Chemistry 286(48):41776-41785
    • (2011) The Journal of Biological Chemistry , vol.286 , Issue.48 , pp. 41776-41785
    • Zhang, J.1    Petit, C.M.2    King, D.S.3    Lee, A.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.