-
1
-
-
63449107173
-
A general modular framework for gene set enrichment analysis
-
Ackermann, M. and Strimmer, K. (2009) A general modular framework for gene set enrichment analysis. BMC Bioinformatics, 10, 47.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 47
-
-
Ackermann, M.1
Strimmer, K.2
-
2
-
-
0027432424
-
Wortmannin is a potent phosphatidylinositol 3-kinase inhibitor: The role of phosphatidylinositol 3, 4, 5-trisphosphate in neutrophil responses
-
Arcaro, A. and Wymann, M. (1993) Wortmannin is a potent phosphatidylinositol 3-kinase inhibitor: the role of phosphatidylinositol 3, 4, 5-trisphosphate in neutrophil responses. Biochem. J., 296 (Pt. 2), 297.
-
(1993)
Biochem. J.
, vol.296
, Issue.PART. 2
, pp. 297
-
-
Arcaro, A.1
Wymann, M.2
-
3
-
-
84873461338
-
Novel systems for dynamically assessing insulin action in live cells reveals heterogeneity in the insulin response
-
Burchfield, J. et al. (2012) Novel systems for dynamically assessing insulin action in live cells reveals heterogeneity in the insulin response. Traffic, 14, 259-273.
-
(2012)
Traffic
, vol.14
, pp. 259-273
-
-
Burchfield, J.1
-
4
-
-
77957832253
-
Insulin regulates adipocyte lipolysis via an akt-independent signaling pathway
-
Choi, S.M. et al. (2010) Insulin regulates adipocyte lipolysis via an akt-independent signaling pathway. Mol. Cell. Biol., 30, 5009-5020.
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 5009-5020
-
-
Choi, S.M.1
-
5
-
-
57449099865
-
Maxquant enables high peptide identification rates, individualized ppb-range mass accuracies and proteome-wide protein quantification
-
Cox, J. and Mann, M. (2008) Maxquant enables high peptide identification rates, individualized ppb-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol., 26, 1367-1372.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
6
-
-
79958152651
-
Pathway analysis of expression data: Deciphering functional building blocks of complex diseases
-
Emmert-Streib, F. and Glazko, G. (2011) Pathway analysis of expression data: deciphering functional building blocks of complex diseases. PLoS Comput. Biol., 7, e1002053.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Emmert-Streib, F.1
Glazko, G.2
-
7
-
-
33746257209
-
The evolution of phosphatidylinositol 3-kinases as regulators of growth and metabolism
-
Engelman, J. et al. (2006) The evolution of phosphatidylinositol 3-kinases as regulators of growth and metabolism. Nat. Rev. Genet., 7, 606-619.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 606-619
-
-
Engelman, J.1
-
8
-
-
34249663294
-
Analyzing gene expression data in terms of gene sets: Methodological issues
-
Goeman, J. and Buhlmann, P. (2007) Analyzing gene expression data in terms of gene sets: methodological issues. Bioinformatics, 23, 980-987.
-
(2007)
Bioinformatics
, vol.23
, pp. 980-987
-
-
Goeman, J.1
Buhlmann, P.2
-
9
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang, D. et al. (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res., 37, 1-13.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang, D.1
-
10
-
-
73449134439
-
Gene set enrichment analysis made simple
-
Irizarry, R. et al. (2009) Gene set enrichment analysis made simple. Stat. Methods Med. Res., 18, 565-575.
-
(2009)
Stat. Methods Med. Res.
, vol.18
, pp. 565-575
-
-
Irizarry, R.1
-
11
-
-
24644470505
-
Ontological analysis of gene expression data: Current tools, limitations, and open problems
-
Khatri, P. and Dra?ghici, S. (2005) Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics, 21, 3587-3595.
-
(2005)
Bioinformatics
, vol.21
, pp. 3587-3595
-
-
Khatri, P.1
Draghici, S.2
-
12
-
-
35348826675
-
A multivariate extension of the gene set enrichment analysis
-
Klebanov, L. et al. (2007) A multivariate extension of the gene set enrichment analysis. J. Bioinform. Comput. Biol., 5, 1139-1153.
-
(2007)
J. Bioinform. Comput. Biol.
, vol.5
, pp. 1139-1153
-
-
Klebanov, L.1
-
13
-
-
33750007469
-
A multivariate approach for integrating genome-wide expression data and biological knowledge
-
Kong, S. et al. (2006) A multivariate approach for integrating genome-wide expression data and biological knowledge. Bioinformatics, 22, 2373-2380.
-
(2006)
Bioinformatics
, vol.22
, pp. 2373-2380
-
-
Kong, S.1
-
14
-
-
84860491216
-
An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies
-
Li, J. and Tseng, G. (2011) An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies. Ann. Appl. Stat., 5, 994-1019.
-
(2011)
Ann. Appl. Stat.
, vol.5
, pp. 994-1019
-
-
Li, J.1
Tseng, G.2
-
15
-
-
34250788809
-
Akt/pkb signaling: Navigating downstream
-
Manning, B. and Cantley, L. (2007) Akt/pkb signaling: navigating downstream. Cell, 129, 1261.
-
(2007)
Cell
, vol.129
, pp. 1261
-
-
Manning, B.1
Cantley, L.2
-
16
-
-
0038054341
-
Pgc-1-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
Mootha, V. et al. (2003) Pgc-1-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat. Genet., 34, 267-273.
-
(2003)
Nat. Genet.
, vol.34
, pp. 267-273
-
-
Mootha, V.1
-
17
-
-
43149116763
-
Gene-set approach for expression pattern analysis
-
Nam, D. and Kim, S. (2008) Gene-set approach for expression pattern analysis. Brief. Bioinform., 9, 189-197.
-
(2008)
Brief. Bioinform.
, vol.9
, pp. 189-197
-
-
Nam, D.1
Kim, S.2
-
18
-
-
0035884207
-
Pulmonary lipid phosphate phosphohydrolase in plasma membrane signalling platforms
-
Nanjundan, M. and Possmayer, F. (2001) Pulmonary lipid phosphate phosphohydrolase in plasma membrane signalling platforms. Biochem. J., 358 (Pt. 3), 637.
-
(2001)
Biochem. J.
, vol.358
, Issue.PART. 3
, pp. 637
-
-
Nanjundan, M.1
Possmayer, F.2
-
19
-
-
41449087811
-
Rapid activation of akt2 is sufficient to stimulate glut4 translocation in 3t3-l1 adipocytes
-
Ng, Y. et al. (2008) Rapid activation of akt2 is sufficient to stimulate glut4 translocation in 3t3-l1 adipocytes. Cell Metabol., 7, 348-356.
-
(2008)
Cell Metabol.
, vol.7
, pp. 348-356
-
-
Ng, Y.1
-
20
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong, S. and Mann, M. (2005) Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol., 1, 252-262.
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 252-262
-
-
Ong, S.1
Mann, M.2
-
21
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, silac, as a simple and accurate approach to expression proteomics
-
Ong, S. et al. (2002) Stable isotope labeling by amino acids in cell culture, silac, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics, 1, 376-386.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.1
-
22
-
-
0003180804
-
The probability integral transformation for testing goodness of fit and combining independent tests of significance
-
Pearson, E. (1938) The probability integral transformation for testing goodness of fit and combining independent tests of significance. Biometrika, 30, 134-148.
-
(1938)
Biometrika
, vol.30
, pp. 134-148
-
-
Pearson, E.1
-
23
-
-
73949156295
-
On a new method of determining ''goodness of fit''
-
Pearson, K. (1934) On a new method of determining ''goodness of fit''. Biometrika, 26, 425-442.
-
(1934)
Biometrika
, vol.26
, pp. 425-442
-
-
Pearson, K.1
-
24
-
-
0038446767
-
Syntaxin 6 regulates glut4 trafficking in 3t3-l1 adipocytes
-
Perera, H. et al. (2003) Syntaxin 6 regulates glut4 trafficking in 3t3-l1 adipocytes. Mol. Biol. Cell, 14, 2946-2958.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 2946-2958
-
-
Perera, H.1
-
25
-
-
82055164075
-
Integrative set enrichment testing for multiple omics platforms
-
Poisson, L. et al. (2011) Integrative set enrichment testing for multiple omics platforms. BMC Bioinformatics, 12, 459.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 459
-
-
Poisson, L.1
-
26
-
-
80655131106
-
Quantitative proteomic analysis of the adipocyte plasma membrane
-
Prior, M. et al. (2011) Quantitative proteomic analysis of the adipocyte plasma membrane. J. Proteome Res., 10, 4970-4982.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 4970-4982
-
-
Prior, M.1
-
27
-
-
33847264343
-
Enrichment or depletion of a go category within a class of genes: Which test?
-
Rivals, I. et al. (2007) Enrichment or depletion of a go category within a class of genes: which test? Bioinformatics, 23, 401-407.
-
(2007)
Bioinformatics
, vol.23
, pp. 401-407
-
-
Rivals, I.1
-
28
-
-
77952844021
-
Meta-analysis for pathway enrichment analysis when combining multiple genomic studies
-
Shen, K. and Tseng, G. (2010) Meta-analysis for pathway enrichment analysis when combining multiple genomic studies. Bioinformatics, 26, 1316-1323.
-
(2010)
Bioinformatics
, vol.26
, pp. 1316-1323
-
-
Shen, K.1
Tseng, G.2
-
29
-
-
0003713709
-
-
(Studies in Social Psychology in World War II, Vol. 1.), 1st edn. Princeton University Press
-
Stouffer, S. et al. (1949) The American Soldier: Adjustment During Army Life. (Studies in Social Psychology in World War II, Vol. 1.), 1st edn. Princeton University Press.
-
(1949)
The American Soldier: Adjustment during Army Life
-
-
Stouffer, S.1
-
30
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A. et al. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA, 102, 15545-15550.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
-
31
-
-
79953186071
-
Next-generation akt inhibitors provide greater specificity: Effects on glucose metabolism in adipocytes
-
Tan, S. et al. (2011) Next-generation akt inhibitors provide greater specificity: effects on glucose metabolism in adipocytes. Biochem. J., 435, 539-544.
-
(2011)
Biochem. J.
, vol.435
, pp. 539-544
-
-
Tan, S.1
-
32
-
-
84861414639
-
Comprehensive literature review and statistical considerations for microarray meta-analysis
-
Tseng, G.C. et al. (2012) Comprehensive literature review and statistical considerations for microarray meta-analysis. Nucleic Acids Res., 40, 3785-3799.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 3785-3799
-
-
Tseng, G.C.1
-
33
-
-
84877309040
-
Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods
-
Varemo, L. et al. (2013) Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Res., 41, 4378-4391.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 4378-4391
-
-
Varemo, L.1
-
34
-
-
70350389586
-
Variations in the requirement for v-snares in glut4 trafficking in adipocytes
-
Zhao, P. et al. (2009) Variations in the requirement for v-snares in glut4 trafficking in adipocytes. J. Cell Sci., 122, 3472-3480.
-
(2009)
J. Cell Sci.
, vol.122
, pp. 3472-3480
-
-
Zhao, P.1
|