-
1
-
-
79951970227
-
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
-
Abyzov, A. et al. (2011) CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing. Genome Res., 21, 974-984.
-
(2011)
Genome Res.
, vol.21
, pp. 974-984
-
-
Abyzov, A.1
-
2
-
-
84861033754
-
Genome-wide copy number analysis of single cells
-
Baslan, T. et al. (2012) Genome-wide copy number analysis of single cells. Nat. Protoc., 7, 1024-1041.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 1024-1041
-
-
Baslan, T.1
-
3
-
-
84869091997
-
Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes
-
Biankin, A.V. et al. (2012) Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature, 491, 399-405.
-
(2012)
Nature
, vol.491
, pp. 399-405
-
-
Biankin, A.V.1
-
4
-
-
84860782006
-
Absolute quantification of somatic DNA alterations in human cancer
-
Carter, S.L. et al. (2012) Absolute quantification of somatic DNA alterations in human cancer. Nat. Biotechnol., 30, 413-421.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 413-421
-
-
Carter, S.L.1
-
5
-
-
0002001578
-
Translation-invariant de-noising
-
In: Antoniadis, A. and Oppenheim, G. (eds). Springer-Verlag, New York
-
Coifman, R.R. and Donoho, D.L. (1995) Translation-invariant de-noising. In: Antoniadis, A. and Oppenheim, G. (eds) Wavelets and Statistics. Springer-Verlag, New York.
-
(1995)
Wavelets and Statistics
-
-
Coifman, R.R.1
Donoho, D.L.2
-
6
-
-
84860645682
-
Xenome-A tool for classifying reads from xenograft samples
-
Conway, T. et al. (2012) Xenome-a tool for classifying reads from xenograft samples. Bioinformatics, 28, i172-i178.
-
(2012)
Bioinformatics
, vol.28
-
-
Conway, T.1
-
7
-
-
79957600437
-
Development of an orthotopic human pancreatic cancer xenograft model using ultrasound guided injection of cells
-
Huynh, A.S. et al. (2011) Development of an orthotopic human pancreatic cancer xenograft model using ultrasound guided injection of cells. PLoS One, 6, e20330.
-
(2011)
PLoS One
, vol.6
-
-
Huynh, A.S.1
-
8
-
-
79951748341
-
CNAseg-A novel framework for identification of copy number changes in cancer from second-generation sequencing data
-
Ivakhno, S. et al. (2010) CNAseg-a novel framework for identification of copy number changes in cancer from second-generation sequencing data. Bioinformatics, 26, 3051-3058.
-
(2010)
Bioinformatics
, vol.26
, pp. 3051-3058
-
-
Ivakhno, S.1
-
9
-
-
77955635446
-
RSW-seq: Algorithm for detection of copy number alterations in deep sequencing data
-
Kim, T.M. et al. (2010) rSW-seq: algorithm for detection of copy number alterations in deep sequencing data. BMC Bioinformatics, 11, 432.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 432
-
-
Kim, T.M.1
-
10
-
-
84861400043
-
Cn.MOPS: Mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate
-
Klambauer, G. et al. (2012) cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate. Nucleic Acids Res., 40, e69.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Klambauer, G.1
-
11
-
-
33847133505
-
A comparison of continuous wavelet transform and modulus maxima analysis of characteristic ECG features
-
Legarreta, I.R. et al. (2005) A comparison of continuous wavelet transform and modulus maxima analysis of characteristic ECG features. Comput. Cardiol., 32, 755-758.
-
(2005)
Comput. Cardiol.
, vol.32
, pp. 755-758
-
-
Legarreta, I.R.1
-
12
-
-
79961202047
-
Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm
-
Magi, A. et al. (2011) Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm. Nucleic Acids Res., 39, e65.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Magi, A.1
-
14
-
-
70449704529
-
Computational methods for discovering structural variation with next-generation sequencing
-
Medvedev, P. et al. (2009) Computational methods for discovering structural variation with next-generation sequencing. Nat. Methods, 6, S13-S20.
-
(2009)
Nat. Methods
, vol.6
-
-
Medvedev, P.1
-
15
-
-
79551621409
-
ReadDepth: A parallel R package for detecting copy number alterations from short sequencing reads
-
Miller, C.A. et al. (2011) ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads. PLoS One, 6, e16327.
-
(2011)
PLoS One
, vol.6
-
-
Miller, C.A.1
-
16
-
-
34347254640
-
Establishment of human tumor xenografts in immunodeficient mice
-
Morton, C.L. and Houghton, P.J. (2007) Establishment of human tumor xenografts in immunodeficient mice. Nat. Protoc., 2, 247-250.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 247-250
-
-
Morton, C.L.1
Houghton, P.J.2
-
17
-
-
79953766940
-
Tumour evolution inferred by single-cell sequencing
-
Navin, N. et al. (2011) Tumour evolution inferred by single-cell sequencing. Nature, 472, 90-94.
-
(2011)
Nature
, vol.472
, pp. 90-94
-
-
Navin, N.1
-
18
-
-
84866700697
-
Qpure: A tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles
-
Song, S. et al. (2012) qpure: a tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles. PLoS One, 7, e45835.
-
(2012)
PLoS One
, vol.7
-
-
Song, S.1
-
19
-
-
70449418416
-
Integrated study of copy number states and genotype calls using high-density SNP arrays
-
Sun, W. et al. (2009) Integrated study of copy number states and genotype calls using high-density SNP arrays. Nucleic Acids Res., 37, 5365-5377.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5365-5377
-
-
Sun, W.1
-
20
-
-
78049248432
-
Allele-specific copy number analysis of tumors
-
Van Loo, P. et al. (2010) Allele-specific copy number analysis of tumors. Proc. Natl Acad. Sci. USA, 107, 16910-16915.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 16910-16915
-
-
Van Loo, P.1
-
21
-
-
35948984173
-
PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
-
Wang, K. et al. (2007) PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res., 17, 1665-1674.
-
(2007)
Genome Res.
, vol.17
, pp. 1665-1674
-
-
Wang, K.1
-
22
-
-
78649646546
-
Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity
-
Waszak, S.M. et al. (2010) Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity. PLoS Comput. Biol., 6, e1000988.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Waszak, S.M.1
-
23
-
-
64849083125
-
CNV-seq, a new method to detect copy number variation using high-throughput sequencing
-
Xie, C. and Tammi, M.T. (2009) CNV-seq, a new method to detect copy number variation using high-throughput sequencing. BMC Bioinformatics, 10, 80.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 80
-
-
Xie, C.1
Tammi, M.T.2
-
24
-
-
84890189765
-
OncoSNP-SEQ: A statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes
-
Yau, C. (2013) OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes. Bioinformatics, 29, 2482-2484.
-
(2013)
Bioinformatics
, vol.29
, pp. 2482-2484
-
-
Yau, C.1
-
25
-
-
69749122557
-
Sensitive and accurate detection of copy number variants using read depth of coverage
-
Yoon, S. et al. (2009) Sensitive and accurate detection of copy number variants using read depth of coverage. Genome Res., 19, 1586-1592.
-
(2009)
Genome Res.
, vol.19
, pp. 1586-1592
-
-
Yoon, S.1
|