A rapid detection method for the plant pathogen Sclerotinia sclerotiorum based on loop-mediated isothermal amplification (LAMP)

Australasian Plant Pathology

Volumn 43, Issue 1, 2014, Pages 61-66

  Duan, Yabing ^a   Ge, Changyan ^a   Zhang, Xiaoke ^a   Wang, Jianxin ^a   Zhou, Mingguo ^a  

^a Key Laboratory of Pesticide   (China)

Author keywords

Hydroxynaphthol blue (HNB); Loop mediated isothermal amplification (LAMP); Rapid detection; Sclerotinia sclerotiorum

Indexed keywords

EID: 84897822412     PISSN: 08153191     EISSN: 14486032     Source Type: Journal    
DOI: 10.1007/s13313-013-0239-6     Document Type: Article

References (21)

1. Bekele B, Hodgetts J, Tomlinson J, Boonham N, Nikolić P, Swarbrick P, Dickinson M (2011) Use of a real-time LAMP isothermal assay for detecting 16SrII and 16SrXII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley. Plant Pathol 60:345-355
2. Boland GJ, Hall R (1994) Index of plant hosts of Sclerotinia sclerotiorum. Can J Plant Pathol 16:93-108
3. Curtis KA, Rudolph DL, Owen SM (2008) Rapid detection of HIV-1 by reverse-transcription, loop-mediated isothermal amplification (RT-LAMP). J Virol Methods 151:264-270
4. Dai TT, Lu CC, Lu J, Dong SM, Ye WW, Wang YC, Zheng XB (2012) Development of a loop-mediated isothermal amplification assay for detection of Phytophthora sojae. FEMS Microbiol Lett 334:27-34
5. Duan YB, Ge CY, Liu SM, Chen CJ, Zhou MG (2013a) Effect of phenylpyrrole fungicide fludioxonil on morphological and physiological characteristics of Sclerotinia sclerotiorum. Pestic Biochem Phys 106:61-67
6. Duan YB, Ge CY, Liu SM, Zhou MG (2013b) A two-component histidine kinase Shk1 controls stress response, sclerotial formation and fungicide resistance in Sclerotinia sclerotiorum. Mol Plant Pathol doi:10.1111/mpp.12041
7. Freeman J, Ward E, Calderon C, McCartney A (2002) A polymerase chain reaction (PCR) assay for the detection of inoculum of Sclerotinia sclerotiorum. Eur J Plant Pathol 108:877-886
8. Goto M, Honda E, Ogura A, Nomoto A, Hanaki K (2009) Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 46:167-172
9. Hill J, Beriwal S, Chandra I, Paul VK, Kapil A, Singh T, Wadowsky RM, Singh V, Goyal A, Jahnukainen T, Johnson JR, Tarr PI, Vats A (2008) Loop-mediated isothermal amplification assay for rapid detection of common strains of Escherichia coli. J Clin Microbiol 46:2800-2804
10. Nagamine K, Kuzuhara Y, Notomi T (2002) Isolation of single-stranded DNA from loop-mediated isothermal amplification products. Biochem Biop Res Co 290:1195-1198
11. Niessen L, Vogel R (2010) Detection of Fusarium graminearum DNA using a loop-mediated isothermal amplification (LAMP) assay. Int J Food Microbiol 140:183-191
12. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:e63
13. Nowotny N, Mostl K, Maderbacher R, Odorfer G, Schuh M (1994) Serological studies in Austrian fattening pigs with respiratory disorders. Acta Vet Hung 42:377-379
14. Pan W, Wang JY, Shen HY, Zhao MQ, Ju CM, Dong XY, Chen JD (2011) Development and application of the novel visual loopmediated isothermal amplification of Omp25 sequence for rapid detection of Brucella sp. J Anim Vet Adv 10:2120-2126
15. Parida M, Posadas G, Inoue S, Hasebe F, Morita K (2004) Realtime reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J Clin Microbiol 42:257-263
16. Parida M, Horioke K, Ishida H, Dash PK, Saxena P, Jana AM, Islam MA, Inoue S, Hosaka N, Morita K (2005) Rapid detection and differentiation of dengue virus serotypes by a real-time reverse transcription-loop-mediated isothermal amplification assay. J Clin Microbiol 43:2895-2903
17. Tomita N, Mori Y, Kanda H, Notomi T (2008) Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat Protoc 3:877-882
18. Tomlinson J, Barker I, Boonham N (2007) Faster, simpler, morespecific methods for improved molecular detection of Phytophthora ramorum in the field. Appl Environ Microb 73:4040-4047
19. Tomlinson J, Dickinson M, Boonham N (2010) Rapid detection of Phytophthora ramorum and P. kernoviae by two-minute DNA extraction followed by isothermal amplification and amplicon detection by generic lateral flow device. Phytopathology 100:143-149
20. Wastling SL, Picozzi K, Kakembo AS, Welburn SC (2010) LAMP for human African trypanosomiasis: a comparative study of detection formats. PLOS Neglect Trop D 4:e865
21. Zoheir KM, Allam AA (2011) A rapid improved method for sexing embryo of water buffalo. Theriogenology 76:83-87