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Volumn 5, Issue FEB, 2014, Pages

Diversity and distribution of eukaryotic microbes in and around a brine pool adjacent to the Thuwal cold seeps in the Red Sea

Author keywords

18S rRNA; Brine pool; Classification; Cold seep; Eukaryotic microbes

Indexed keywords

AMMONIA; NITROGEN; RNA 18S;

EID: 84897656033     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2014.00037     Document Type: Article
Times cited : (34)

References (54)
  • 1
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., Binder, B. J., Olson, R. J., Chisholm, S. W., Devereux, R., and Stahl, D. A. (1990). Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56, 1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 2
    • 84856250633 scopus 로고    scopus 로고
    • First discovery of a cold seep on the continental margin of the central Red Sea
    • doi: 10.1016/j.jmarsys.2011.12.004
    • Batang, Z. B., Papathanassiou, E., Al-Suwailem, A., Smith, C., Salomidi, M., Petihakis, G., et al. (2012). First discovery of a cold seep on the continental margin of the central Red Sea. J. Mar. Syst. 94, 247-253. doi: 10.1016/j.jmarsys.2011.12.004
    • (2012) J. Mar. Syst. , vol.94 , pp. 247-253
    • Batang, Z.B.1    Papathanassiou, E.2    Al-Suwailem, A.3    Smith, C.4    Salomidi, M.5    Petihakis, G.6
  • 3
    • 33646579538 scopus 로고    scopus 로고
    • Microeukaryote community patterns along an O2/H2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway)
    • doi: 10.1128/AEM.72.5.3626-3636.2006
    • Behnke, A., Bunge, J., Barger, K., Breiner, H.-W., Alla, V., and Stoeck, T. (2006). Microeukaryote community patterns along an O2/H2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway). Appl. Environ. Microbiol. 72, 3626-3636. doi: 10.1128/AEM.72.5.3626-3636.2006
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3626-3636
    • Behnke, A.1    Bunge, J.2    Barger, K.3    Breiner, H.-W.4    Alla, V.5    Stoeck, T.6
  • 4
    • 0034928672 scopus 로고    scopus 로고
    • Monterey Bay cold-seep biota: Assemblages, abundance, and ultrastructure of living foraminifera
    • doi: 10.1016/S0967-0637(01)00017-6
    • Bernhard, J. M., Buck, K. R., and Barry, J. P. (2001). Monterey Bay cold-seep biota: Assemblages, abundance, and ultrastructure of living foraminifera. Deep Sea Res. I Oceanogr. Res. Papers 48, 2233-2249. doi: 10.1016/S0967-0637(01)00017-6
    • (2001) Deep Sea Res. I Oceanogr. Res. Papers , vol.48 , pp. 2233-2249
    • Bernhard, J.M.1    Buck, K.R.2    Barry, J.P.3
  • 5
    • 84897619658 scopus 로고    scopus 로고
    • Pyrosequencing assessment of prokaryotic and eukaryotic diversity in biofilm communities from a French river
    • doi: 10.1002/mbo3.80
    • Bricheux, G., Morin, L., Le Moal, G., Coffe, G., Balestrino, D., Charbonnel, N., et al. (2013). Pyrosequencing assessment of prokaryotic and eukaryotic diversity in biofilm communities from a French river. Microbiologyopen 2, 402-414. doi: 10.1002/mbo3.80
    • (2013) Microbiologyopen , vol.2 , pp. 402-414
    • Bricheux, G.1    Morin, L.2    Le Moal, G.3    Coffe, G.4    Balestrino, D.5    Charbonnel, N.6
  • 6
    • 84880020106 scopus 로고    scopus 로고
    • Deciphering the presence and activity of fungal communities in marine sediments using a model estuarine system
    • doi: 10.3354/ame01638
    • Burgaud, G., Woehlke, S., Rédou, V., Orsi, W., Beaudoin, D., Barbier, G., et al. (2013). Deciphering the presence and activity of fungal communities in marine sediments using a model estuarine system. Aquat. Microb. Ecol. 70, 45-62. doi: 10.3354/ame01638
    • (2013) Aquat. Microb. Ecol. , vol.70 , pp. 45-62
    • Burgaud, G.1    Woehlke, S.2    Rédou, V.3    Orsi, W.4    Beaudoin, D.5    Barbier, G.6
  • 7
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: a flexible tool for aligning sequences to a template alignment
    • doi: 10.1093/bioinformatics/btp636
    • Caporaso, J. G., Bittinger, K., Bushman, F. D., Desantis, T. Z., Andersen, G. L., and Knight, R. (2010a). PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26, 266-267. doi: 10.1093/bioinformatics/btp636
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1    Bittinger, K.2    Bushman, F.D.3    Desantis, T.Z.4    Andersen, G.L.5    Knight, R.6
  • 8
  • 9
    • 0033035785 scopus 로고    scopus 로고
    • Picoplankton and nanoplankton and their trophic coupling in surface waters of the Sargasso Sea south of Bermuda
    • doi: 10.4319/lo.1999.44.2.0259
    • Caron, D. A., Peele, E. R., Lim, E. L., and Dennett, M. R. (1999). Picoplankton and nanoplankton and their trophic coupling in surface waters of the Sargasso Sea south of Bermuda. Limnol. Oceanogr. 44, 259-272. doi: 10.4319/lo.1999.44.2.0259
    • (1999) Limnol. Oceanogr. , vol.44 , pp. 259-272
    • Caron, D.A.1    Peele, E.R.2    Lim, E.L.3    Dennett, M.R.4
  • 10
    • 58149200948 scopus 로고    scopus 로고
    • The ribosomal database project: improved alignments and new tools for rRNA analysis
    • doi: 10.1093/nar/gkn879
    • Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., et al. (2009). The ribosomal database project: improved alignments and new tools for rRNA analysis. Nucl. Acids Res. 37, 141-145. doi: 10.1093/nar/gkn879
    • (2009) Nucl. Acids Res. , vol.37 , pp. 141-145
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5    Farris, R.J.6
  • 11
    • 84878150357 scopus 로고    scopus 로고
    • Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene
    • doi: 10.1073/pnas.1219283110
    • Coolen, M. J. L., Orsi, W. D., Balkema, C., Quince, C., Harris, K., Sylva, S. P., et al. (2013). Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene. Proc. Natl. Acad. Sci. U.S.A. 110, 8609-8614. doi: 10.1073/pnas.1219283110
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110 , pp. 8609-8614
    • Coolen, M.J.L.1    Orsi, W.D.2    Balkema, C.3    Quince, C.4    Harris, K.5    Sylva, S.P.6
  • 12
    • 84864453108 scopus 로고    scopus 로고
    • jModelTest 2: more models, new heuristics and parallel computing
    • doi: 10.1038/nmeth.2109
    • Darriba, D., Taboada, G. L., Doallo, R., and Posada, D. (2012). jModelTest 2: more models, new heuristics and parallel computing. Nat. Methods 9, 772-772. doi: 10.1038/nmeth.2109
    • (2012) Nat. Methods , vol.9 , pp. 772-772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 13
    • 0037062470 scopus 로고    scopus 로고
    • Novel kingdom-level eukaryotic diversity in anoxic environments
    • doi: 10.1073/pnas.062169599
    • Dawson, S. C., and Pace, N. R. (2002). Novel kingdom-level eukaryotic diversity in anoxic environments. Proc. Natl. Acad. Sci. U.S.A. 99, 8324-8329. doi: 10.1073/pnas.062169599
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 8324-8329
    • Dawson, S.C.1    Pace, N.R.2
  • 14
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: bayesian evolutionary analysis by sampling trees
    • doi: 10.1186/1471-2148-7-214
    • Drummond, A., and Rambaut, A. (2007). BEAST: bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214. doi: 10.1186/1471-2148-7-214
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.1    Rambaut, A.2
  • 15
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • doi: 10.1093/nar/gkh340
    • Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl. Acids Res. 32, 1792-1797. doi: 10.1093/nar/gkh340
    • (2004) Nucl. Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 16
    • 77955884151 scopus 로고    scopus 로고
    • Deep-Sea microbial eukaryotes in anoxic, microoxic, and sulfidic environments
    • ed J. Seckbach (Springer), doi: 10.1007/978-1-4020-6112-7_39.
    • Edgcomb, V., Bernhard, J., and Jeon, S. (2007). "Deep-Sea microbial eukaryotes in anoxic, microoxic, and sulfidic environments," in Algae and Cyanobacteria in Extreme Environments, ed J. Seckbach (Springer), 711-734. doi: 10.1007/978-1-4020-6112-7_39
    • (2007) Algae and Cyanobacteria in Extreme Environments , pp. 711-734
    • Edgcomb, V.1    Bernhard, J.2    Jeon, S.3
  • 17
    • 78650764281 scopus 로고    scopus 로고
    • Marine subsurface eukaryotes: the fungal majority
    • doi: 10.1111/j.1462-2920.2010.02318.x
    • Edgcomb, V. P., Beaudoin, D., Gast, R., Biddle, J. F., and Teske, A. (2011a). Marine subsurface eukaryotes: the fungal majority. Environ. Microbiol. 13, 172-183. doi: 10.1111/j.1462-2920.2010.02318.x
    • (2011) Environ. Microbiol. , vol.13 , pp. 172-183
    • Edgcomb, V.P.1    Beaudoin, D.2    Gast, R.3    Biddle, J.F.4    Teske, A.5
  • 18
    • 78751569884 scopus 로고    scopus 로고
    • Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution
    • doi: 10.1038/ismej.2010.121
    • Edgcomb, V. P., Breglia, S. A., Yubuki, N., Beaudoin, D., Patterson, D. J., Leander, B. S., et al. (2011b). Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution. ISME J. 5, 231-243. doi: 10.1038/ismej.2010.121
    • (2011) ISME J. , vol.5 , pp. 231-243
    • Edgcomb, V.P.1    Breglia, S.A.2    Yubuki, N.3    Beaudoin, D.4    Patterson, D.J.5    Leander, B.S.6
  • 19
    • 80052305524 scopus 로고    scopus 로고
    • Novel active kinetoplastids associated with hypersaline anoxic basins in the Eastern Mediterranean deep-sea Deep Sea Res
    • doi: 10.1016/j.dsr.2011.07.003
    • Edgcomb, V. P., Orsi, W., Breiner, H. W., Stock, A., Filker, S., Yakimov, M. M., et al. (2011c). Novel active kinetoplastids associated with hypersaline anoxic basins in the Eastern Mediterranean deep-sea Deep Sea Res. I 58, 1040-1048. doi: 10.1016/j.dsr.2011.07.003
    • (2011) I , vol.58 , pp. 1040-1048
    • Edgcomb, V.P.1    Orsi, W.2    Breiner, H.W.3    Stock, A.4    Filker, S.5    Yakimov, M.M.6
  • 20
    • 84892974971 scopus 로고    scopus 로고
    • Active eukaryotes in microbialites from Highborne Cay, Bahamas, and Hamelin Pool (Shark Bay), Australia
    • doi: 10.1038/ismej.2013.130
    • Edgcomb, V. P., Bernhard, J. M., Summons, R. E., Orsi, W., Beaudoin, D., and Visscher, P. T. (2014). Active eukaryotes in microbialites from Highborne Cay, Bahamas, and Hamelin Pool (Shark Bay), Australia. ISME J. 8, 418-429. doi: 10.1038/ismej.2013.130
    • (2014) ISME J. , vol.8 , pp. 418-429
    • Edgcomb, V.P.1    Bernhard, J.M.2    Summons, R.E.3    Orsi, W.4    Beaudoin, D.5    Visscher, P.T.6
  • 21
    • 0030046438 scopus 로고    scopus 로고
    • Heterotrophic flagellates from coral reef sediments (Great Barrier Reef, Australia)
    • doi: 10.1016/S0003-9365(96)80013-3
    • Ekebom, J., Patterson, D. J., and Vors, N. (1996). Heterotrophic flagellates from coral reef sediments (Great Barrier Reef, Australia). Arch. Protisenkunde 146, 251-272. doi: 10.1016/S0003-9365(96)80013-3
    • (1996) Arch. Protisenkunde , vol.146 , pp. 251-272
    • Ekebom, J.1    Patterson, D.J.2    Vors, N.3
  • 22
    • 84859945805 scopus 로고    scopus 로고
    • 18S rDNA phylogeny of Lamproderma and allied genera (Stemonitales, Myxomycetes, Amoebozoa)
    • doi: 10.1371/journal.pone.0035359
    • Fiore-Donno, A. M., Kamono, A., Meyer, M., Schnittler, M., Fukui, M., and Cavalier-Smith, T. (2012). 18S rDNA phylogeny of Lamproderma and allied genera (Stemonitales, Myxomycetes, Amoebozoa). PLoS ONE 7:e35359. doi: 10.1371/journal.pone.0035359
    • (2012) PLoS ONE , vol.7
    • Fiore-Donno, A.M.1    Kamono, A.2    Meyer, M.3    Schnittler, M.4    Fukui, M.5    Cavalier-Smith, T.6
  • 23
    • 77956548284 scopus 로고    scopus 로고
    • Diversity of active chemolithoautotrophic prokaryotes in the sulfidic zone of a Black Sea pelagic redoxcline as determined by rRNA-based stable isotope probing
    • doi: 10.1111/j.1574-6941.2010.00944.x
    • Glaubitz, S., Labrenz, M., Jost, G., and Jurgens, K. (2010). Diversity of active chemolithoautotrophic prokaryotes in the sulfidic zone of a Black Sea pelagic redoxcline as determined by rRNA-based stable isotope probing. FEMS Microbiol. Ecol. 74, 32-41. doi: 10.1111/j.1574-6941.2010.00944.x
    • (2010) FEMS Microbiol. Ecol. , vol.74 , pp. 32-41
    • Glaubitz, S.1    Labrenz, M.2    Jost, G.3    Jurgens, K.4
  • 24
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Vd'ačnỳ
    • Good, I. J. (1953). The population frequencies of species and the estimation of population parameters. Biometrika 40, 237-264. Vd'ačnỳ
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 25
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • doi: 10.1101/gr.112730.110
    • Haas, B. J., Gevers, D., Earl, A. M., Feldgarden, M., Ward, D. V., Giannoukos, G., et al. (2011). Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21, 494-504. doi: 10.1101/gr.112730.110
    • (2011) Genome Res , vol.21 , pp. 494-504
    • Haas, B.J.1    Gevers, D.2    Earl, A.M.3    Feldgarden, M.4    Ward, D.V.5    Giannoukos, G.6
  • 26
    • 62649113993 scopus 로고    scopus 로고
    • Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups." Proc
    • doi: 10.1073/pnas.0807880106
    • Hampl, V., Hug, L., Leigh, J. W., Dacks, J. B., Lang, B. F., Simpson, A. G. B., et al. (2009). Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups." Proc. Natl. Acad. Sci. U.S.A. 106, 3859-3864. doi: 10.1073/pnas.0807880106
    • (2009) Natl. Acad. Sci. U.S.A. , vol.106 , pp. 3859-3864
    • Hampl, V.1    Hug, L.2    Leigh, J.W.3    Dacks, J.B.4    Lang, B.F.5    Simpson, A.G.B.6
  • 27
    • 72649084530 scopus 로고    scopus 로고
    • Polymerase chain reaction primers miss half of rRNA microbial diversity
    • doi: 10.1038/ismej.2009.89
    • Hong, S., Bunge, J., Leslin, C., Jeon, S., and Epstein, S. S. (2009). Polymerase chain reaction primers miss half of rRNA microbial diversity. ISME J. 3, 1365-1373. doi: 10.1038/ismej.2009.89
    • (2009) ISME J. , vol.3 , pp. 1365-1373
    • Hong, S.1    Bunge, J.2    Leslin, C.3    Jeon, S.4    Epstein, S.S.5
  • 28
    • 76049118198 scopus 로고    scopus 로고
    • Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation
    • doi: 10.1111/j.1574-6941.2009.00804.x
    • Jebaraj, C. S., Raghukumar, C., Behnke, A., and Stoeck, T. (2010). Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation. FEMS Microbiol. Ecol. 71, 399-412. doi: 10.1111/j.1574-6941.2009.00804.x
    • (2010) FEMS Microbiol. Ecol. , vol.71 , pp. 399-412
    • Jebaraj, C.S.1    Raghukumar, C.2    Behnke, A.3    Stoeck, T.4
  • 29
    • 0002187390 scopus 로고
    • Revised version of direct determination of ammonia in natural waters as indophenol blue I.C.E.S., C. 1970/C: 9. ICES information on Techniques and Methods for the sea water analysis
    • Koroleff, F. (1970). Revised version of direct determination of ammonia in natural waters as indophenol blue I.C.E.S., C.M. 1970/C: 9. ICES information on Techniques and Methods for the sea water analysis. Interlab. Rep. 3, 19-22.
    • (1970) Interlab. Rep. , vol.3 , pp. 19-22
    • Koroleff, F.1
  • 30
    • 34249862426 scopus 로고    scopus 로고
    • Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea
    • doi: 10.1073/pnas.0611081104
    • Lam, P., Jensen, M. M., Lavik, G., McGinnis, D. F., Müller, B., Schubert, C.J., et al. (2007). Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc. Natl. Acad. Sci. U.S.A. 104, 7104-7109. doi: 10.1073/pnas.0611081104
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 7104-7109
    • Lam, P.1    Jensen, M.M.2    Lavik, G.3    McGinnis, D.F.4    Müller, B.5    Schubert, C.J.6
  • 31
    • 66249094531 scopus 로고    scopus 로고
    • Inter-and intraspecific variations of bacterial communities associated with marine sponges from san juan island, washington
    • doi: 10.1128/AEM.00002-09
    • Lee, O. O., Wong, Y. H., and Qian, P.-Y. (2009). Inter-and intraspecific variations of bacterial communities associated with marine sponges from san juan island, washington. Appl. Environ. Microbiol. 75, 3513-3521. doi: 10.1128/AEM.00002-09
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 3513-3521
    • Lee, O.O.1    Wong, Y.H.2    Qian, P.-Y.3
  • 32
    • 79956286597 scopus 로고    scopus 로고
    • Rethinking microbial diversity analysis in the high throughput sequencing era
    • doi: 10.1016/j.mimet.2011.03.014
    • Lemos, L. N., Fulthorpe, R. R., Triplett, E. W., and Roesch, L. F. W. (2011). Rethinking microbial diversity analysis in the high throughput sequencing era. J. Microb. Methods 86, 42-51. doi: 10.1016/j.mimet.2011.03.014
    • (2011) J. Microb. Methods , vol.86 , pp. 42-51
    • Lemos, L.N.1    Fulthorpe, R.R.2    Triplett, E.W.3    Roesch, L.F.W.4
  • 33
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
    • doi: 10.1093/nar/gkr201
    • Letunic, I., and Bork, P. (2011). Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucl. Acids Res. 39, W475-W478. doi: 10.1093/nar/gkr201
    • (2011) Nucl. Acids Res. , vol.39
    • Letunic, I.1    Bork, P.2
  • 34
    • 71249094329 scopus 로고    scopus 로고
    • Eukaryotic diversity and phylogeny using small-and large-subunit ribosomal RNA genes from environmental samples
    • doi: 10.1111/j.1462-2920.2009.02023.x
    • Marande, W., López-García, P., and Moreira, D. (2009). Eukaryotic diversity and phylogeny using small-and large-subunit ribosomal RNA genes from environmental samples. Environ. Microbiol. 11, 3179-3188. doi: 10.1111/j.1462-2920.2009.02023.x
    • (2009) Environ. Microbiol. , vol.11 , pp. 3179-3188
    • Marande, W.1    López-García, P.2    Moreira, D.3
  • 35
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • doi: 10.1016/0378-1119(88)90066-2
    • Medlin, L., Elwood, H. J., Stickel, S., and Sogin, M. L. (1988). The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71, 491-499. doi: 10.1016/0378-1119(88)90066-2
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 36
    • 34848894621 scopus 로고    scopus 로고
    • Genomic minimalism in the early diverging intestinal parasite Giardia lamblia
    • doi: 10.1126/science.1143837
    • Morrison, H. G., McArthur, A. G., Gillin, F. D., Aley, S. B., Adam, R. D., Olsen, G. J., et al. (2007). Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science 317, 1921-1926. doi: 10.1126/science.1143837
    • (2007) Science , vol.317 , pp. 1921-1926
    • Morrison, H.G.1    McArthur, A.G.2    Gillin, F.D.3    Aley, S.B.4    Adam, R.D.5    Olsen, G.J.6
  • 37
    • 80051952079 scopus 로고    scopus 로고
    • Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments
    • doi: 10.1111/j.1462-2920.2011.02507.x
    • Nagahama, T., Takahashi, E., Nagano, Y., Abdel-Wahab, M. A., and Miyazaki, M. (2011). Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments. Environ. Microbiol. 13, 2359-2370. doi: 10.1111/j.1462-2920.2011.02507.x
    • (2011) Environ. Microbiol. , vol.13 , pp. 2359-2370
    • Nagahama, T.1    Takahashi, E.2    Nagano, Y.3    Abdel-Wahab, M.A.4    Miyazaki, M.5
  • 38
    • 84873906604 scopus 로고    scopus 로고
    • Deep sequencing of subseafloor eukaryotic rRNA reveals active fungi across marine subsurface provinces
    • doi: 10.1371/journal.pone.0056335
    • Orsi, W., Biddle, J. F., and Edgcomb, V. (2013). Deep sequencing of subseafloor eukaryotic rRNA reveals active fungi across marine subsurface provinces. PLoS ONE 8:e56335. doi: 10.1371/journal.pone.0056335
    • (2013) PLoS ONE , vol.8
    • Orsi, W.1    Biddle, J.F.2    Edgcomb, V.3
  • 39
    • 84875868879 scopus 로고    scopus 로고
    • Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns
    • doi: 10.3389/fmicb.2012.00341
    • Orsi, W., Charvet, S., Vd'ačnỳ, P., Bernhard, J. M., and Edgcomb, V. P. (2012a). Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns. Front. Microbiol. 3:341. doi: 10.3389/fmicb.2012.00341
    • (2012) Front. Microbiol. , vol.3 , pp. 341
    • Orsi, W.1    Charvet, S.2    Vd'ačnỳ, P.3    Bernhard, J.M.4    Edgcomb, V.P.5
  • 40
    • 84863986885 scopus 로고    scopus 로고
    • Effect of oxygen minimum zone formation on communities of marine protists
    • doi: 10.1038/ismej.2012.7
    • Orsi, W., Song, Y. C., Hallam, S., and Edgcomb, V. (2012b). Effect of oxygen minimum zone formation on communities of marine protists. ISME J. 6, 1586-1601. doi: 10.1038/ismej.2012.7
    • (2012) ISME J. , vol.6 , pp. 1586-1601
    • Orsi, W.1    Song, Y.C.2    Hallam, S.3    Edgcomb, V.4
  • 41
    • 79953695045 scopus 로고    scopus 로고
    • Eukaryotic richness in the abyss: insights from pyrotag sequencing
    • doi: 10.1371/journal.pone.0018169
    • Pawlowski, J., Christen, R., Lecroq, B., Bachar, D., Shahbazkia, H. R., Amaral-Zettler, L., et al. (2011). Eukaryotic richness in the abyss: insights from pyrotag sequencing. PLoS ONE 6:e18169. doi: 10.1371/journal.pone.0018169
    • (2011) PLoS ONE , vol.6
    • Pawlowski, J.1    Christen, R.2    Lecroq, B.3    Bachar, D.4    Shahbazkia, H.R.5    Amaral-Zettler, L.6
  • 42
    • 0037310350 scopus 로고    scopus 로고
    • The correlation between rDNA copy number and genome size in eukaryotes
    • doi: 10.1139/g02-103
    • Prokopowich, C. D., Gregory, T. R., and Crease, T. J. (2003). The correlation between rDNA copy number and genome size in eukaryotes. Genome 46, 48-50. doi: 10.1139/g02-103
    • (2003) Genome , vol.46 , pp. 48-50
    • Prokopowich, C.D.1    Gregory, T.R.2    Crease, T.J.3
  • 43
    • 84755161032 scopus 로고    scopus 로고
    • Parasitic infection of the hyperiid amphipod Themisto libellula in the Canadian Beaufort Sea (Arctic Ocean), with a description of Ganymedes themistos sp. n. (Apicomplexa, Eugregarinorida)
    • doi: 10.1007/s00300-010-0821-0
    • Prokopowicz, A., Rueckert, S., Leander, B., Michaud, J., and Fortier, L. (2010). Parasitic infection of the hyperiid amphipod Themisto libellula in the Canadian Beaufort Sea (Arctic Ocean), with a description of Ganymedes themistos sp. n. (Apicomplexa, Eugregarinorida). Polar Biol. 33, 1339-1350. doi: 10.1007/s00300-010-0821-0
    • (2010) Polar Biol. , vol.33 , pp. 1339-1350
    • Prokopowicz, A.1    Rueckert, S.2    Leander, B.3    Michaud, J.4    Fortier, L.5
  • 44
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
    • doi: 10.1093/nar/gks1219
    • Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., et al. (2013). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucl. Acids Res. 41, D590-D596. doi: 10.1093/nar/gks1219
    • (2013) Nucl. Acids Res. , vol.41
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3    Gerken, J.4    Schweer, T.5    Yarza, P.6
  • 45
    • 77956304094 scopus 로고    scopus 로고
    • Rapid denoising of pyrosequencing amplicon data: exploiting the rank-abundance distribution
    • doi: 10.1038/nmeth0910-668b
    • Reeder, J., and Knight, R. (2011). Rapid denoising of pyrosequencing amplicon data: exploiting the rank-abundance distribution. Nat. Methods 7, 668-669. doi: 10.1038/nmeth0910-668b
    • (2011) Nat. Methods , vol.7 , pp. 668-669
    • Reeder, J.1    Knight, R.2
  • 46
    • 79953312695 scopus 로고    scopus 로고
    • Identification of a divergent environmental DNA sequence clade using the phylogeny of gregarine parasites (Apicomplexa) from crustacean hosts
    • doi: 10.1371/journal.pone.0018163
    • Rueckert, S., Simdyanov, T. G., Aleoshin, V. V., and Leander, B. S. (2011). Identification of a divergent environmental DNA sequence clade using the phylogeny of gregarine parasites (Apicomplexa) from crustacean hosts. PLoS ONE 6:e18163. doi: 10.1371/journal.pone.0018163
    • (2011) PLoS ONE , vol.6
    • Rueckert, S.1    Simdyanov, T.G.2    Aleoshin, V.V.3    Leander, B.S.4
  • 48
    • 76249134266 scopus 로고    scopus 로고
    • Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor
    • doi: 10.1073/pnas.0908816106
    • Scheckenbach, F., Hausmann, K., Wylezich, C., Weitere, M., and Arndt, H. (2010). Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor. Proc. Natl. Acad. Sci. U.S.A. 107, 115-120. doi: 10.1073/pnas.0908816106
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 115-120
    • Scheckenbach, F.1    Hausmann, K.2    Wylezich, C.3    Weitere, M.4    Arndt, H.5
  • 49
    • 12544255323 scopus 로고    scopus 로고
    • The real "kingdoms" of eukaryotes
    • doi: 10.1016/j.cub.2004.08.038
    • Simpson, A. G. B., and Roger, A. J. (2004). The real "kingdoms" of eukaryotes. Curr. Biol. 14, R693-R696. doi: 10.1016/j.cub.2004.08.038
    • (2004) Curr. Biol. , vol.14
    • Simpson, A.G.B.1    Roger, A.J.2
  • 50
    • 73349085213 scopus 로고    scopus 로고
    • Molecular evidence that phylogenetically diverged ciliates are active in microbial mats of deep-sea cold-seep sediment
    • doi: 10.1111/j.1550-7408.2009.00457.x
    • Takishita, K., Kakizoe, N., Yoshida, T., and Maruyama, T. (2010). Molecular evidence that phylogenetically diverged ciliates are active in microbial mats of deep-sea cold-seep sediment. J. Euk. Microbiol. 57, 76-86. doi: 10.1111/j.1550-7408.2009.00457.x
    • (2010) J. Euk. Microbiol. , vol.57 , pp. 76-86
    • Takishita, K.1    Kakizoe, N.2    Yoshida, T.3    Maruyama, T.4
  • 51
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • doi: 10.1093/molbev/msr121
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739. doi: 10.1093/molbev/msr121
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 52
    • 0033967816 scopus 로고    scopus 로고
    • Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates
    • doi: 10.1093/oxfordjournals.molbev.a026304
    • Van Hoek, A. H. A. M., Van Alen, T. A., Sprakel, V. S. I., Leunissen, J. A. M., Brigge, T., Vogels, G. D., et al. (2000). Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates. Mol. Biol. Evol. 17, 251-258. doi: 10.1093/oxfordjournals.molbev.a026304
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 251-258
    • Van Hoek, A.H.A.M.1    Van Alen, T.A.2    Sprakel, V.S.I.3    Leunissen, J.A.M.4    Brigge, T.5    Vogels, G.D.6
  • 53
    • 70350527180 scopus 로고    scopus 로고
    • Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
    • doi: 10.1371/journal.pone.0007401
    • Wang, Y., and Qian, P.-Y. (2009). Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS ONE 4:e7401. doi: 10.1371/journal.pone.0007401
    • (2009) PLoS ONE , vol.4
    • Wang, Y.1    Qian, P.-Y.2
  • 54
    • 80055091617 scopus 로고    scopus 로고
    • Protist diversity in suboxic and sulfidic waters of the Black Sea
    • doi: 10.1111/j.1462-2920.2011.02569.x
    • Wylezich, C., and Jürgens, K. (2011). Protist diversity in suboxic and sulfidic waters of the Black Sea. Environ. Microbiol. 13, 2939-2956. doi: 10.1111/j.1462-2920.2011.02569.x
    • (2011) Environ. Microbiol. , vol.13 , pp. 2939-2956
    • Wylezich, C.1    Jürgens, K.2


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