Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene

Proceedings of the National Academy of Sciences of the United States of America

Volumn 110, Issue 21, 2013, Pages 8609-8614

  Coolen, Marco J L ^a   Orsi, William D ^a   Balkema, Cherel ^a   Quince, Christopher ^b   Harris, Keith ^b   Sylva, Sean P ^a   Filipova Marinova, Mariana ^c   Giosan, Liviu ^a  

^a WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

^b UNIVERSITY OF GLASGOW   (United Kingdom)

^c Museum of Natural History   (Bulgaria)

Author keywords

Amplicon pyrosequencing; Ancient plankton DNA; D H ratios in alkenones; Paleoenvironment

Indexed keywords

FRESH WATER; RNA 18S;

ARTICLE; BLACK SEA; CERCOZOA; CHRYSOPHYTA; DEGLACIATION; DIATOM; DINOFLAGELLATE; ENVIRONMENTAL CHANGE; EVOLUTION; GEOCHEMISTRY; GREEN ALGA; HAPTOPHYTA; HOLOCENE; MARINE SPECIES; NONHUMAN; NORTHERN HEMISPHERE; PHYSICAL ANTHROPOLOGY; PLANKTON; PRIORITY JOURNAL; PYROSEQUENCING; SALINITY; SEDIMENT; UPPER PLEISTOCENE;

AMPLICON PYROSEQUENCING; ANCIENT PLANKTON DNA; D/H RATIOS IN ALKENONES; PALEOENVIRONMENT;

ANIMALS; BASE SEQUENCE; BIOLOGICAL EVOLUTION; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; PLANKTON; RNA, RIBOSOMAL, 18S;

EID: 84878150357     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1219283110     Document Type: Article

References (48)

1. Ross DA, Degens ET, Macilvaine J (1970) Black Sea: Recent sedimentary history. Science 170(3954): 163-165.
2. Ryan WBF, Major CO, Lericolais G, Goldstein SL (2003) Catastrophic flooding of the Black Sea. Annu Rev Earth Planet Sci 31: 525-554.
3. Giosan L, Filip F, Constatinescu S (2009) Was the Black Sea catastrophically flooded in the early Holocene? Quat Sci Rev 28(1-2): 1-6.
4. Hiscott RN, et al. (2007) A gradual drowning of the southwestern Black Sea shelf: Evidence for a progressive rather than abrupt Holocene reconnection with the eastern Mediterranean Sea through the Marmara Sea gateway. Quat Int 167: 19-34.
5. Major CO, et al. (2006) The co-evolution of Black Sea level and composition through the last deglaciation and its paleoclimatic significance. Quat Sci Rev 25(17-18): 2031-2047.
6. Soulet G, Menot G, Lericolais G, Bard E (2011) A revised calendar age for the last reconnection of the Black Sea to the global ocean. Quat Sci Rev 30(9-10): 1019-1026.
7. Soulet G, et al. (2010) Glacial hydrologic conditions in the Black Sea reconstructed using geochemical pore water profiles. Earth Planet Sci Lett 296(1-2): 57-66.
8. Marret F, Mudie P, Aksu A, Hiscott RN (2009) A Holocene dinocyst record of a twostep transformation of the Neoeuxinian brackish water lake into the Black Sea. Quat Int 197: 72-86.
9. Major C, Ryan W, Lericolais G, Hajdas I (2002) Constraints on Black Sea outflow to the Sea of Marmara during the last glacial-interglacial transition. Mar Geol 190(1-2): 19-34.
10. Bahr A, Arz HW, Lamy F, Wefer G (2006) Late glacial to Holocene paleoenvironmental evolution of the Black Sea, reconstructed with stable oxygen isotope records obtained on ostracod shells. Earth Planet Sci Lett 241(3-4): 863-875.
11. Giunta S, Morigi C, Negri A, Guichard F, Lericolais G (2007) Holocene biostratigraphy and paleoenvironmental changes in the Black Sea based on calcareous nannoplankton. Mar Micropaleontol 63(1-2): 91-110.
12. Filipova-Marinova M, Pavlov D, Coolen MJL, Giosan L (2013) First high-resolution marinopalynological stratigraphy of Late Quaternary sediments from the central part of the Bulgarian Black Sea area. Quat Int 293: 170-183.
13. Bahr A, Lamy F, Arz H, Kuhlmann H, Wefer G (2005) Late glacial to Holocene climate and sedimentation history in the NW Black Sea. Mar Geol 214: 309-322.
14. Dale B (1983) Dinoflagellate resting cysts: "Benthic plankton." Survival Strategies of the Algae, ed Fryxel GA (Cambridge Univ Press, Cambridge, UK), pp 69-137.
15. Inagaki F, Okada H, Tsapin AI, Nealson KH (2005) Microbial survival. The paleome: A sedimentary genetic record of past microbial communities. Astrobiology 5(2): 141-153.
16. Bissett A, Gibson JAE, Jarman SN, Swadling KM, Cromer L (2005) Isolation, amplification, and identification of ancient copepod DNA from lake sediments. Limnol Oceanogr Methods 3: 533-542.
17. Coolen MJL, et al. (2009) DNA and lipid molecular stratigraphic records of haptophyte succession in the Black Sea during the Holocene. Earth Planet Sci Lett 284(3-4): 610-621.
18. Boere AC, Sinninghe Damsté JS, Rijpstra WIC, Volkman JK, Coolen MJL (2011) Sourcespecific variability in post-depositional DNA preservation with potential implications for DNA-based paleoecological records. Org Geochem 42(10): 1216-1225.
19. Coolen MJL (2011) 7000 years of Emiliania huxleyi viruses in the Black Sea. Science 333(6041): 451-452.
20. Corinaldesi C, Barucca M, Luna GM, Dell'Anno A (2011) Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments. Mol Ecol 20(3): 642-654.
21. Margulies M, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437(7057): 376-380.
22. Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction- amplified genes coding for 16S rRNA. Appl Environ Microbiol 59(3): 695-700.
23. Van der Meer MTJ, et al. (2008) Molecular isotopic and dinoflagellate evidence for late Holocene freshening of the Black Sea. Earth Planet Sci Lett 267: 426-434.
24. Giosan L, et al. (2012) Early anthropogenic transformation of the Danube-Black Sea system. Sci Rep 2:582.
25. Eglinton TI, et al. (1997) Variability in radiocarbon ages of individual organic compounds from marine sediments. Science 277: 796-799.
26. Jones GA, Gagnon AR (1994) Radiocarbon chronology of Black Sea sediments. Deep Sea Res Part I Oceanogr Res Pap 41(3): 531-557.
27. Hay BJ (1988) Sediment accumulation in the central western Black Sea over the past 5100 years. Paleoceanography 3(4): 491-508.
28. Arthur MA, et al. (1994) Varve calibration records of carbonate and organic carbon accumulation over the last 2000 years in the Black Sea. Global Biogeochem Cycles 8(2): 195-217.
29. Wanner H, et al. (2008) Mid- to Late Holocene climate change: An overview. Quat Sci Rev 27(19-20): 1791-1828.
30. Marcus NH (1996) Ecological and evolutionary significance of resting eggs in marine copepods: Past, present, and future studies. Hydrobiologia 320(1-3): 141-152.
31. Svetlichny L, et al. (2010) Salinity tolerance of Calanus euxinus in the Black and Marmara Seas. Mar Ecol Prog Ser 404: 127-138.
32. Xu L, et al. (2001) Identification of a novel alkenone in Black Sea sediments. Org Geochem 32: 633-645.
33. Everhart SE, Keller HW, Ely JS (2008) Influence of bark pH on the occurrence and distribution of tree canopy myxomycete species. Mycologia 100(2): 191-204.
34. Zonneveld KAF, Versteegh GJM, De Lange GJ (2001) Palaeoproductivity and postdepositional aerobic organic matter decay reflected by dinoflagellate cyst assemblages of the Eastern Mediterranean S1 sapropel. Mar Geol 172(3-4): 181-195.
35. Jebaraj CS, Raghukumar C, Behnke A, Stoeck T (2010) Fungal diversity in oxygendepleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation. FEMS Microbiol Ecol 71(3): 399-412.
36. Ross DA, Degens ET (1974) Recent sediments of Black Sea. AAPG Bull 20: 183-199.
37. Willerslev E, Cooper A (2005) Ancient DNA. Proc Biol Sci 272(1558): 3-16.
38. Johnson SS, et al. (2007) Ancient bacteria show evidence of DNA repair. Proc Natl Acad Sci USA 104(36): 14401-14405.
39. Coolen MJL, Overmann J (2007) 217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment. Environ Microbiol 9(1): 238-249.
40. Raghlukumar C, et al. (2004) Buried in time: Culturable fungi in a deep-sea sediment core from the Chagos Trench, Indian Ocean. Deep Sea Res Part I Oceanogr Res Pap 51(11): 1759-1768.
41. OrsiW, Biddle JF, Edgcomb V (2013) Deep sequencing of subseafloor eukaryotic rRNA reveals active fungi across marine subsurface provinces. PLoS ONE 8(2):e56335.
42. Hou YB, Lin SJ (2009) Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: Gene content estimation for dinoflagellate genomes. PLoS ONE 4(9):e6978.
43. Vidal L, et al. (2010) Hydrology in the Sea of Marmara during the last 23 ka: Implications for timing of Black Sea connections and sapropel deposition. Paleoceanography 25:PA1205.
44. Bodeneau N (1993) Microalgal Blooms in the Romanian Area of the Black Sea and Contemporary Eutrophication Conditions (Elsevier, Amsterdam).
45. Soulet G, et al. (2011) Black Sea "lake" reservoir age evolution since the Last Glacial: Hydrologic and climatic implications. Earth Planet Sci Lett 308(1-2): 245-258.
46. Fawley MW, Fawley KP, Buchheim MA (2004) Molecular diversity among communities of freshwater microchlorophytes. Microb Ecol 48(4): 489-499.
47. Fulton JM, Arthur MA, Freeman KH (2012) Subboreal aridity and scytonemin in the Holocene Black Sea. Org Geochem 49: 47-55.
48. Huang Y, Freeman KH, Wilkin RT, Arthur MA, Jones AD (2000) Black Sea chemocline oscillations during the Holocene: Molecular and isotopic studies of marginal sediments. Org Geochem 31: 1525-1531.