-
1
-
-
84865542206
-
Structural divergence of paralogous S components from ECF-type ABC transporters
-
Berntsson RP, ter Beek J, Majsnerowska M, et al. Structural divergence of paralogous S components from ECF-type ABC transporters. Proc Natl Acad Sci USA 2012; 109:13990-13995.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 13990-13995
-
-
Berntsson, R.P.1
Ter Beek, J.2
Majsnerowska, M.3
-
2
-
-
84873706571
-
Assembly and mechanism of a group II ECF transporter
-
Karpowich NK, Wang DN. Assembly and mechanism of a group II ECF transporter. Proc Natl Acad Sci USA 2013; 110:2534-2539.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 2534-2539
-
-
Karpowich, N.K.1
Wang, D.N.2
-
3
-
-
84877756304
-
Crystal structure of a folate energy-coupling factor transporter from Lactobacillus brevis
-
Xu K, Zhang M, Zhao Q, et al. Crystal structure of a folate energy-coupling factor transporter from Lactobacillus brevis. Nature 2013; 497:268-271.
-
(2013)
Nature
, vol.497
, pp. 268-271
-
-
Xu, K.1
Zhang, M.2
Zhao, Q.3
-
4
-
-
84877766581
-
Structure of a bacterial energycoupling factor transporter
-
Wang T, Fu G, Pan X, et al. Structure of a bacterial energycoupling factor transporter. Nature 2013; 497:272-276.
-
(2013)
Nature
, vol.497
, pp. 272-276
-
-
Wang, T.1
Fu, G.2
Pan, X.3
-
5
-
-
78649848467
-
Structure and mechanism of the S component of a bacterial ECF transporter
-
Zhang P, Wang J, Shi Y. Structure and mechanism of the S component of a bacterial ECF transporter. Nature 2010; 468:717-720.
-
(2010)
Nature
, vol.468
, pp. 717-720
-
-
Zhang, P.1
Wang, J.2
Shi, Y.3
-
6
-
-
33644894229
-
Comparative and functional genomic analysis of prokaryotic nickel and cobalt uptake transporters: Evidence for a novel group of ATPbinding cassette transporters
-
Rodionov DA, Hebbeln P, Gelfand MS, Eitinger T. Comparative and functional genomic analysis of prokaryotic nickel and cobalt uptake transporters: evidence for a novel group of ATPbinding cassette transporters. J Bacteriol 2006; 188:317-327.
-
(2006)
J Bacteriol
, vol.188
, pp. 317-327
-
-
Rodionov, D.A.1
Hebbeln, P.2
Gelfand, M.S.3
Eitinger, T.4
-
7
-
-
70350462622
-
Two essential arginine residues in the T components of energy-coupling factor transporters
-
Neubauer O, Alfandega A, Schoknecht J, Sternberg U, Pohlmann A, Eitinger T. Two essential arginine residues in the T components of energy-coupling factor transporters. J Bacteriol 2009; 191:6482-6488.
-
(2009)
J Bacteriol
, vol.191
, pp. 6482-6488
-
-
Neubauer, O.1
Alfandega, A.2
Schoknecht, J.3
Sternberg, U.4
Pohlmann, A.5
Eitinger, T.6
-
8
-
-
79960053262
-
The structural basis of modularity in ECF-type ABC transporters
-
Erkens GB, Berntsson RP, Fulyani F, et al. The structural basis of modularity in ECF-type ABC transporters. Nat Struct Mol Biol 2011; 18:755-760.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 755-760
-
-
Erkens, G.B.1
Berntsson, R.P.2
Fulyani, F.3
-
9
-
-
64849111600
-
Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization
-
Zhang Y, Rodionov DA, Gelfand MS, Gladyshev VN. Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization. BMC Genomics 2009; 10:78.
-
(2009)
BMC Genomics
, vol.10
, pp. 78
-
-
Zhang, Y.1
Rodionov, D.A.2
Gelfand, M.S.3
Gladyshev, V.N.4
-
10
-
-
70350625249
-
Comparative genomics of trace elements: Emerging dynamic view of trace element utilization and function
-
Zhang Y, Gladyshev VN. Comparative genomics of trace elements: emerging dynamic view of trace element utilization and function. Chem Rev 2009; 109:4828-4861.
-
(2009)
Chem Rev
, vol.109
, pp. 4828-4861
-
-
Zhang, Y.1
Gladyshev, V.N.2
-
12
-
-
84867465992
-
Specific metal recognition in nickel trafficking
-
Higgins KA, Carr CE, Maroney MJ. Specific metal recognition in nickel trafficking. Biochemistry 2012; 51:7816-7832.
-
(2012)
Biochemistry
, vol.51
, pp. 7816-7832
-
-
Higgins, K.A.1
Carr, C.E.2
Maroney, M.J.3
-
13
-
-
84954622546
-
Front matter
-
John Wiley & Sons, Ltd, Chichester, UK
-
Sigel A, Sigel H, Sigel RKO. Front Matter. In: Nickel and Its Surprising Impact in Nature, Volume 2. John Wiley & Sons, Ltd, Chichester, UK, 2007: i-xxvi.
-
(2007)
Nickel and Its Surprising Impact in Nature
, vol.2
-
-
Sigel, A.1
Sigel, H.2
Sigel, R.K.O.3
-
15
-
-
37049250847
-
Vitamin B12, a Cobalt Complex
-
Rickes EL, Brink NG, Koniuszy FR, Wood TR, Folkers K. Vitamin B12, a Cobalt Complex. Science 1948; 108:134.
-
(1948)
Science
, vol.108
, pp. 134
-
-
Rickes, E.L.1
Brink, N.G.2
Koniuszy, F.R.3
Wood, T.R.4
Folkers, K.5
-
16
-
-
78650527027
-
Vitamin B12 biosynthesis gene diversity in the Ross Sea: The identification of a new group of putative polar B12 biosynthesizers
-
Bertrand EM, Saito MA, Jeon YJ, Neilan BA. Vitamin B12 biosynthesis gene diversity in the Ross Sea: the identification of a new group of putative polar B12 biosynthesizers. Environ Microbiol 2011; 13:1285-1298.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1285-1298
-
-
Bertrand, E.M.1
Saito, M.A.2
Jeon, Y.J.3
Neilan, B.A.4
-
17
-
-
77952803052
-
Vitamin B12: Unique metalorganic compounds and the most complex vitamins
-
Randaccio L, Geremia S, Demitri N, Wuerges J. Vitamin B12: unique metalorganic compounds and the most complex vitamins. Molecules 2010; 15:3228-3259.
-
(2010)
Molecules
, vol.15
, pp. 3228-3259
-
-
Randaccio, L.1
Geremia, S.2
Demitri, N.3
Wuerges, J.4
-
18
-
-
0015902384
-
The effect of vitamin B12 deprivation on the enzymes of fatty acid synthesis
-
Frenkel EP, Kitchens RL, Johnston JM. The effect of vitamin B12 deprivation on the enzymes of fatty acid synthesis. J Biol Chem 1973; 248:7450-7456.
-
(1973)
J Biol Chem
, vol.248
, pp. 7450-7456
-
-
Frenkel, E.P.1
Kitchens, R.L.2
Johnston, J.M.3
-
19
-
-
0014588434
-
Neurological manifestations in Vitamin B 12 deficiency
-
Rachmilewitz M. Neurological manifestations in Vitamin B 12 deficiency. Harefuah 1969; 77:269-271.
-
(1969)
Harefuah
, vol.77
, pp. 269-271
-
-
Rachmilewitz, M.1
-
20
-
-
0017385449
-
Natural product synthesis and vitamin B12
-
Eschenmoser A, Wintner CE. Natural product synthesis and vitamin B12. Science 1977; 196:1410-1420.
-
(1977)
Science
, vol.196
, pp. 1410-1420
-
-
Eschenmoser, A.1
Wintner, C.E.2
-
21
-
-
84883765149
-
Elucidation of the anaerobic pathway for the corrin component of cobalamin (vitamin B12)
-
Moore SJ, Lawrence AD, Biedendieck R, et al. Elucidation of the anaerobic pathway for the corrin component of cobalamin (vitamin B12). Proc Natl Acad Sci USA 2013; 110:14906-14911.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 14906-14911
-
-
Moore, S.J.1
Lawrence, A.D.2
Biedendieck, R.3
-
22
-
-
34249683488
-
Membrane protein structure: Prediction versus reality
-
Elofsson A, von Heijne G. Membrane protein structure: prediction versus reality. Annu Rev Biochem 2007; 76:125-140.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 125-140
-
-
Elofsson, A.1
Von Heijne, G.2
-
23
-
-
0000651660
-
The distribution of positively charged residues in bacterial inner membrane proteins correlates with the transmembrane topology
-
Heijne G. The distribution of positively charged residues in bacterial inner membrane proteins correlates with the transmembrane topology. EMBO J 1986; 5:3021-3027.
-
(1986)
EMBO J
, vol.5
, pp. 3021-3027
-
-
Heijne, G.1
-
26
-
-
33746549925
-
Crystal structure of a divalent metal ion transporter CorA at 2.9 angstrom resolution
-
Eshaghi S, Niegowski D, Kohl A, Martinez Molina D, Lesley SA, Nordlund P. Crystal structure of a divalent metal ion transporter CorA at 2.9 angstrom resolution. Science 2006; 313:354-357.
-
(2006)
Science
, vol.313
, pp. 354-357
-
-
Eshaghi, S.1
Niegowski, D.2
Kohl, A.3
Martinez Molina, D.4
Lesley, S.A.5
Nordlund, P.6
-
27
-
-
0039911097
-
Interaction of one mole of copper with the alpha amino group of bovine serum albumin
-
Peters T Jr, Interaction of one mole of copper with the alpha amino group of bovine serum albumin. Biochim Biophys Acta 1960; 39:546-547.
-
(1960)
Biochim Biophys Acta
, vol.39
, pp. 546-547
-
-
Peters Jr., T.1
-
29
-
-
33845921608
-
Metal-binding and nuclease activity of an antimicrobial peptide analogue of the salivary histatin 5
-
Melino S, Gallo M, Trotta E, Mondello F, Paci M, Petruzzelli R. Metal-binding and nuclease activity of an antimicrobial peptide analogue of the salivary histatin 5. Biochemistry 2006; 45:15373-15383.
-
(2006)
Biochemistry
, vol.45
, pp. 15373-15383
-
-
Melino, S.1
Gallo, M.2
Trotta, E.3
Mondello, F.4
Paci, M.5
Petruzzelli, R.6
-
30
-
-
33746837692
-
3DQSAR study for DNA cleavage proteins with a potential antitumor ATCUN-like motif
-
Gonzalez-Diaz H, Sanchez-Gonzalez A, Gonzalez-Diaz Y. 3DQSAR study for DNA cleavage proteins with a potential antitumor ATCUN-like motif. J Inorg Biochem 2006; 100:1290-1297.
-
(2006)
J Inorg Biochem
, vol.100
, pp. 1290-1297
-
-
Gonzalez-Diaz, H.1
Sanchez-Gonzalez, A.2
Gonzalez-Diaz, Y.3
-
31
-
-
10844293517
-
ATCUN-like metal-binding motifs in proteins: Identification and characterization by crystal structure and sequence analysis
-
Sankararamakrishnan R, Verma S, Kumar S. ATCUN-like metal-binding motifs in proteins: identification and characterization by crystal structure and sequence analysis. Proteins 2005; 58:211-221.
-
(2005)
Proteins
, vol.58
, pp. 211-221
-
-
Sankararamakrishnan, R.1
Verma, S.2
Kumar, S.3
-
32
-
-
0037184479
-
The ATCUN domain as a probe of intermolecular interactions: Application to calmodulin-peptide complexes
-
Mal TK, Ikura M, Kay LE. The ATCUN domain as a probe of intermolecular interactions: application to calmodulin-peptide complexes. J Am Chem Soc 2002; 124:14002-14003.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 14002-14003
-
-
Mal, T.K.1
Ikura, M.2
Kay, L.E.3
-
33
-
-
0035840960
-
Structural characterization of proteins with an attached ATCUN motif by paramagnetic relaxation enhancement NMR spectroscopy
-
Donaldson LW, Skrynnikov NR, Choy WY, et al. Structural characterization of proteins with an attached ATCUN motif by paramagnetic relaxation enhancement NMR spectroscopy. J Am Chem Soc 2001; 123:9843-9847.
-
(2001)
J Am Chem Soc
, vol.123
, pp. 9843-9847
-
-
Donaldson, L.W.1
Skrynnikov, N.R.2
Choy, W.Y.3
-
34
-
-
0030739477
-
NMR structure of neuromedin C, a neurotransmitter with an amino terminal CuII-, NiII-binding (ATCUN) motif
-
Gasmi G, Singer A, Forman-Kay J, Sarkar B. NMR structure of neuromedin C, a neurotransmitter with an amino terminal CuII-, NiII-binding (ATCUN) motif. J Pept Res 1997; 49:500-509.
-
(1997)
J Pept Res
, vol.49
, pp. 500-509
-
-
Gasmi, G.1
Singer, A.2
Forman-Kay, J.3
Sarkar, B.4
-
35
-
-
0029050768
-
Neuromedin C binds Cu(II) and Ni(II) via the ATCUN motif: Implications for the CNS and cancer growth
-
Harford C, Sarkar B. Neuromedin C binds Cu(II) and Ni(II) via the ATCUN motif: implications for the CNS and cancer growth. Biochem Biophys Res Commun 1995; 209:877-882.
-
(1995)
Biochem Biophys Res Commun
, vol.209
, pp. 877-882
-
-
Harford, C.1
Sarkar, B.2
-
36
-
-
0005138378
-
Structural diversity of F-430 from methanobacterium-thermoauto-trophicum - A nickel X-ray absorption spectroscopic study
-
Eidsness MK, Sullivan RJ, Schwartz JR, et al. Structural diversity of F-430 from methanobacterium-thermoauto-trophicum - a nickel X-ray absorption spectroscopic study. J Amer Chem Soc 1986; 108:3120-3121.
-
(1986)
J Amer Chem Soc
, vol.108
, pp. 3120-3121
-
-
Eidsness, M.K.1
Sullivan, R.J.2
Schwartz, J.R.3
-
37
-
-
34248352208
-
Density functionals and transition-metal atoms
-
Johnson ER, Dickson RM, Becke AD. Density functionals and transition-metal atoms. J Chem Phys 2007; 126:184104.
-
(2007)
J Chem Phys
, vol.126
, pp. 184104
-
-
Johnson, E.R.1
Dickson, R.M.2
Becke, A.D.3
-
38
-
-
10644250257
-
Inhomogeneous electron gas
-
Hohenberg P, Kohn W. Inhomogeneous electron gas. Phys Rev 1964; 136:B864-B871.
-
(1964)
Phys Rev
, vol.136
-
-
Hohenberg, P.1
Kohn, W.2
-
39
-
-
0042113153
-
Self-consistent equations including exchange and correlation effects
-
Kohn W, Sham LJ. Self-consistent equations including exchange and correlation effects. Phys Rev 1965; 140:A1133-A1138.
-
(1965)
Phys Rev
, vol.140
-
-
Kohn, W.1
Sham, L.J.2
-
40
-
-
33845185172
-
A new population analysis based on atomic polar tensors
-
Cioslowski J. A new population analysis based on atomic polar tensors. J Am Chem Soc 1989; 111:8333-8336.
-
(1989)
J Am Chem Soc
, vol.111
, pp. 8333-8336
-
-
Cioslowski, J.1
-
41
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
42
-
-
33645816587
-
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
-
Keane TM, Creevey CJ, Pentony MM, Naughton TJ, McLnerney JO. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol 2006; 6:29.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 29
-
-
Keane, T.M.1
Creevey, C.J.2
Pentony, M.M.3
Naughton, T.J.4
McLnerney, J.O.5
-
43
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003; 52:696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
44
-
-
33847221102
-
A multiplatform code for the analysis of energy-dispersive X-ray fluorescence spectra
-
Sole VA, Papillon E, Cotte M, Walter P, Susini J. A multiplatform code for the analysis of energy-dispersive X-ray fluorescence spectra. Spectrochimica Acta Part B: Atomic Spectroscopy 2007; 62:63-68.
-
(2007)
Spectrochimica Acta Part B: Atomic Spectroscopy
, vol.62
, pp. 63-68
-
-
Sole, V.A.1
Papillon, E.2
Cotte, M.3
Walter, P.4
Susini, J.5
-
45
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Macromolecular Crystallography, Pt A 1997; 276:307-326.
-
(1997)
Macromolecular Crystallography, Pt A
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
46
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project N.
-
Collaborative Computational Project N. The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994; 50:760-763.
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 760-763
-
-
-
48
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. Phaser crystallographic software. J Appl Crystallogr 2007; 40:658-674.
-
(2007)
J Appl Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
51
-
-
0003845223
-
-
Nature Publishing Group, a division of Macmillan Publishers
-
DeLano WL. The PyMOL molecular graphics system. Nature Publishing Group, a division of Macmillan Publishers. 2002.
-
(2002)
The PyMOL Molecular Graphics System
-
-
Delano, W.L.1
-
52
-
-
0035853521
-
Capturing a photoexcited molecular structure through time-domain X-ray absorption fine structure
-
Chen LX, Jager WJH, Jennings G, Gosztola DJ, Munkholm A, Hessler JP. Capturing a photoexcited molecular structure through time-domain X-ray absorption fine structure. Science 2001; 292:262-264.
-
(2001)
Science
, vol.292
, pp. 262-264
-
-
Chen, L.X.1
Jager, W.J.H.2
Jennings, G.3
Gosztola, D.J.4
Munkholm, A.5
Hessler, J.P.6
-
53
-
-
0039246584
-
X-ray spectroscopic studies of nickel-complexes, with application to the structure of nickel sites in hydrogenases
-
Colpas GJ, Maroney MJ, Bagyinka C, et al. X-ray spectroscopic studies of nickel-complexes, with application to the structure of nickel sites in hydrogenases. Inorg Chem 1991; 30:920-928.
-
(1991)
Inorg Chem
, vol.30
, pp. 920-928
-
-
Colpas, G.J.1
Maroney, M.J.2
Bagyinka, C.3
-
54
-
-
84897589200
-
-
Revision B. 01, Gassing, Inc., Walling, CT
-
Frisch MJ, Trucks GW, Schlegel HB, et al. Gassing 09, Revision B. 01,. Gassing, Inc., Walling, CT, 2010.
-
(2010)
Gassing 09
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
-
55
-
-
0006073669
-
Abinitio effective core potentials for molecular calculations-potentials for main group elements NA to BI
-
Wadt WR, Hay PJ. Abinitio effective core potentials for molecular calculations-potentials for main group elements NA to BI. J Chem Phys 1985; 82:284-298.
-
(1985)
J Chem Phys
, vol.82
, pp. 284-298
-
-
Wadt, W.R.1
Hay, P.J.2
-
56
-
-
26844534384
-
Self-consistent molecular orbital methods. XX. A basis set for correlated wave functions
-
Krishnan R, Binkley JS, Seeger R, Pople JA. Self-consistent molecular orbital methods. XX. A basis set for correlated wave functions. J Chem Phys 1980; 72:650-654.
-
(1980)
J Chem Phys
, vol.72
, pp. 650-654
-
-
Krishnan, R.1
Binkley, J.S.2
Seeger, R.3
Pople, J.A.4
-
58
-
-
43049141516
-
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: Two new functionals and systematic testing of four M06-class functionals and 12 other functionals
-
Zhao Y, Truhlar DG. The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals. Theor Chem Acc 2008; 120:215-241.
-
(2008)
Theor Chem Acc
, vol.120
, pp. 215-241
-
-
Zhao, Y.1
Truhlar, D.G.2
|