-
1
-
-
34249299791
-
The complex language of chromatin regulation during transcription
-
S.L. Berger The complex language of chromatin regulation during transcription Nature 447 2007 407 412
-
(2007)
Nature
, vol.447
, pp. 407-412
-
-
Berger, S.L.1
-
2
-
-
77249087051
-
Chemical phylogenetics of histone deacetylases
-
J.E. Bradner, N. West, M.L. Grachan, E.F. Greenberg, S.J. Haggarty, T. Warnow, and R. Mazitschek Chemical phylogenetics of histone deacetylases Nat. Chem. Biol. 6 2010 238 243
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 238-243
-
-
Bradner, J.E.1
West, N.2
Grachan, M.L.3
Greenberg, E.F.4
Haggarty, S.J.5
Warnow, T.6
Mazitschek, R.7
-
3
-
-
84859977895
-
Sirtuins mediate mammalian metabolic responses to nutrient availability
-
A. Chalkiadaki, and L. Guarente Sirtuins mediate mammalian metabolic responses to nutrient availability Nat. Rev. Endocrinol. 8 2012 287 296
-
(2012)
Nat. Rev. Endocrinol.
, vol.8
, pp. 287-296
-
-
Chalkiadaki, A.1
Guarente, L.2
-
4
-
-
61849166008
-
Altered arginine metabolism in the central nervous system (CNS) of the Cln3-/- mouse model of juvenile Batten disease
-
C.H. Chan, D. Ramirez-Montealegre, and D.A. Pearce Altered arginine metabolism in the central nervous system (CNS) of the Cln3-/- mouse model of juvenile Batten disease Neuropathol. Appl. Neurobiol. 35 2009 189 207
-
(2009)
Neuropathol. Appl. Neurobiol.
, vol.35
, pp. 189-207
-
-
Chan, C.H.1
Ramirez-Montealegre, D.2
Pearce, D.A.3
-
5
-
-
20844457100
-
Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra
-
Y. Chen, S.W. Kwon, S.C. Kim, and Y. Zhao Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra J. Proteome Res. 4 2005 998 1005
-
(2005)
J. Proteome Res.
, vol.4
, pp. 998-1005
-
-
Chen, Y.1
Kwon, S.W.2
Kim, S.C.3
Zhao, Y.4
-
6
-
-
34248640428
-
Lysine propionylation and butyrylation are novel post-translational modifications in histones
-
Y. Chen, R. Sprung, Y. Tang, H. Ball, B. Sangras, S.C. Kim, J.R. Falck, J. Peng, W. Gu, and Y. Zhao Lysine propionylation and butyrylation are novel post-translational modifications in histones Mol. Cell. Proteomics 6 2007 812 819
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 812-819
-
-
Chen, Y.1
Sprung, R.2
Tang, Y.3
Ball, H.4
Sangras, B.5
Kim, S.C.6
Falck, J.R.7
Peng, J.8
Gu, W.9
Zhao, Y.10
-
7
-
-
84867186480
-
Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways
-
Y. Chen, W. Zhao, J.S. Yang, Z. Cheng, H. Luo, Z. Lu, M. Tan, W. Gu, and Y. Zhao Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways Mol. Cell. Proteomics 11 2012 1048 1062
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1048-1062
-
-
Chen, Y.1
Zhao, W.2
Yang, J.S.3
Cheng, Z.4
Luo, H.5
Lu, Z.6
Tan, M.7
Gu, W.8
Zhao, Y.9
-
8
-
-
77953995002
-
Covalent histone modifications - Miswritten, misinterpreted and mis-erased in human cancers
-
P. Chi, C.D. Allis, and G.G. Wang Covalent histone modifications - miswritten, misinterpreted and mis-erased in human cancers Nat. Rev. Cancer 10 2010 457 469
-
(2010)
Nat. Rev. Cancer
, vol.10
, pp. 457-469
-
-
Chi, P.1
Allis, C.D.2
Wang, G.G.3
-
9
-
-
81055122671
-
Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase
-
J. Du, Y. Zhou, X. Su, J.J. Yu, S. Khan, H. Jiang, J. Kim, J. Woo, J.H. Kim, and B.H. Choi et al. Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase Science 334 2011 806 809
-
(2011)
Science
, vol.334
, pp. 806-809
-
-
Du, J.1
Zhou, Y.2
Su, X.3
Yu, J.J.4
Khan, S.5
Jiang, H.6
Kim, J.7
Woo, J.8
Kim, J.H.9
Choi, B.H.10
-
10
-
-
49649114605
-
Protein structure modeling with MODELLER
-
N. Eswar, D. Eramian, B. Webb, M.Y. Shen, and A. Sali Protein structure modeling with MODELLER Methods Mol. Biol. 426 2008 145 159
-
(2008)
Methods Mol. Biol.
, vol.426
, pp. 145-159
-
-
Eswar, N.1
Eramian, D.2
Webb, B.3
Shen, M.Y.4
Sali, A.5
-
11
-
-
0033887456
-
Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins
-
R.A. Frye Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins Biochem. Biophys. Res. Commun. 273 2000 793 798
-
(2000)
Biochem. Biophys. Res. Commun.
, vol.273
, pp. 793-798
-
-
Frye, R.A.1
-
12
-
-
0019333276
-
Regulation of phosphofructokinase by a new mechanism. An activation factor binding to phosphorylated enzyme
-
E. Furuya, and K. Uyeda Regulation of phosphofructokinase by a new mechanism. An activation factor binding to phosphorylated enzyme J. Biol. Chem. 255 1980 11656 11659
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 11656-11659
-
-
Furuya, E.1
Uyeda, K.2
-
13
-
-
0000389537
-
Organic acidemias due to defects in lysine oxidation: 2-ketoadipic acidemia and glutaric acidemia
-
C.R. Scriver, A.L. Beaudet, W.S. Sly, D. Valle, B. Childs, K.W. Kinzler, B. Vogelstein, McGraw Hill New York
-
S.I. Goodman, and F.E. Frerman Organic acidemias due to defects in lysine oxidation: 2-ketoadipic acidemia and glutaric acidemia C.R. Scriver, A.L. Beaudet, W.S. Sly, D. Valle, B. Childs, K.W. Kinzler, B. Vogelstein, The Metabolic and Molecular Bases of Inherited Disease 2001 McGraw Hill New York
-
(2001)
The Metabolic and Molecular Bases of Inherited Disease
-
-
Goodman, S.I.1
Frerman, F.E.2
-
14
-
-
0014376375
-
Structure and function of carbamoylphosphate synthase. I. Transitions between two catalytically inactive forms and the active form
-
G. Guthöhrlein, and J. Knappe Structure and function of carbamoylphosphate synthase. I. Transitions between two catalytically inactive forms and the active form Eur. J. Biochem. 7 1968 119 127
-
(1968)
Eur. J. Biochem.
, vol.7
, pp. 119-127
-
-
Guthöhrlein, G.1
Knappe, J.2
-
15
-
-
0001149791
-
Isolation and characterization of a naturally occurring cofactor of carbamyl phosphate biosynthesis
-
L.M. Hall, R.L. Metzenberg, and P.P. Cohen Isolation and characterization of a naturally occurring cofactor of carbamyl phosphate biosynthesis J. Biol. Chem. 230 1958 1013 1021
-
(1958)
J. Biol. Chem.
, vol.230
, pp. 1013-1021
-
-
Hall, L.M.1
Metzenberg, R.L.2
Cohen, P.P.3
-
16
-
-
84858782079
-
AMPK: A nutrient and energy sensor that maintains energy homeostasis
-
D.G. Hardie, F.A. Ross, and S.A. Hawley AMPK: a nutrient and energy sensor that maintains energy homeostasis Nat. Rev. Mol. Cell Biol. 13 2012 251 262
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 251-262
-
-
Hardie, D.G.1
Ross, F.A.2
Hawley, S.A.3
-
17
-
-
84872276165
-
Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome
-
A.S. Hebert, K.E. Dittenhafer-Reed, W. Yu, D.J. Bailey, E.S. Selen, M.D. Boersma, J.J. Carson, M. Tonelli, A.J. Balloon, and A.J. Higbee et al. Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome Mol. Cell 49 2013 186 199
-
(2013)
Mol. Cell
, vol.49
, pp. 186-199
-
-
Hebert, A.S.1
Dittenhafer-Reed, K.E.2
Yu, W.3
Bailey, D.J.4
Selen, E.S.5
Boersma, M.D.6
Carson, J.J.7
Tonelli, M.8
Balloon, A.J.9
Higbee, A.J.10
-
18
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
W. Huang, B.T. Sherman, and R.A. Lempicki Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Nucleic Acids Res. 37 2009 1 13
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
19
-
-
0034677535
-
Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase
-
S. Imai, C.M. Armstrong, M. Kaeberlein, and L. Guarente Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase Nature 403 2000 795 800
-
(2000)
Nature
, vol.403
, pp. 795-800
-
-
Imai, S.1
Armstrong, C.M.2
Kaeberlein, M.3
Guarente, L.4
-
20
-
-
33746992118
-
Substrate and functional diversity of lysine acetylation revealed by a proteomics survey
-
S.C. Kim, R. Sprung, Y. Chen, Y. Xu, H. Ball, J. Pei, T. Cheng, Y. Kho, H. Xiao, and L. Xiao et al. Substrate and functional diversity of lysine acetylation revealed by a proteomics survey Mol. Cell 23 2006 607 618
-
(2006)
Mol. Cell
, vol.23
, pp. 607-618
-
-
Kim, S.C.1
Sprung, R.2
Chen, Y.3
Xu, Y.4
Ball, H.5
Pei, J.6
Cheng, T.7
Kho, Y.8
Xiao, H.9
Xiao, L.10
-
21
-
-
0037084783
-
Biochemical, pathologic and behavioral analysis of a mouse model of glutaric acidemia type i
-
D.M. Koeller, M. Woontner, L.S. Crnic, B. Kleinschmidt-DeMasters, J. Stephens, E.L. Hunt, and S.I. Goodman Biochemical, pathologic and behavioral analysis of a mouse model of glutaric acidemia type I Hum. Mol. Genet. 11 2002 347 357
-
(2002)
Hum. Mol. Genet.
, vol.11
, pp. 347-357
-
-
Koeller, D.M.1
Woontner, M.2
Crnic, L.S.3
Kleinschmidt-Demasters, B.4
Stephens, J.5
Hunt, E.L.6
Goodman, S.I.7
-
22
-
-
0018715759
-
Fatty acid biosynthesis in Wallerian degeneration of rat sciatic nerve
-
A.H. Koeppen, J.D. Papandrea, and E.J. Mitzen Fatty acid biosynthesis in Wallerian degeneration of rat sciatic nerve Muscle Nerve 2 1979 369 375
-
(1979)
Muscle Nerve
, vol.2
, pp. 369-375
-
-
Koeppen, A.H.1
Papandrea, J.D.2
Mitzen, E.J.3
-
23
-
-
37549002891
-
Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation
-
D.B. Lombard, F.W. Alt, H.L. Cheng, J. Bunkenborg, R.S. Streeper, R. Mostoslavsky, J. Kim, G. Yancopoulos, D. Valenzuela, and A. Murphy et al. Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation Mol. Cell. Biol. 27 2007 8807 8814
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 8807-8814
-
-
Lombard, D.B.1
Alt, F.W.2
Cheng, H.L.3
Bunkenborg, J.4
Streeper, R.S.5
Mostoslavsky, R.6
Kim, J.7
Yancopoulos, G.8
Valenzuela, D.9
Murphy, A.10
-
24
-
-
84860650421
-
Human carbamoyl phosphate synthetase i (CPSI): Insights on the structural role of the unknown function domains
-
M. Lopes-Marques, G. Igrejas, A. Amorim, and L. Azevedo Human carbamoyl phosphate synthetase I (CPSI): insights on the structural role of the unknown function domains Biochem. Biophys. Res. Commun. 421 2012 409 412
-
(2012)
Biochem. Biophys. Res. Commun.
, vol.421
, pp. 409-412
-
-
Lopes-Marques, M.1
Igrejas, G.2
Amorim, A.3
Azevedo, L.4
-
25
-
-
84863534997
-
Metabolic regulation of epigenetics
-
C. Lu, and C.B. Thompson Metabolic regulation of epigenetics Cell Metab. 16 2012 9 17
-
(2012)
Cell Metab.
, vol.16
, pp. 9-17
-
-
Lu, C.1
Thompson, C.B.2
-
26
-
-
84862271824
-
Substrates for efficient fluorometric screening employing the NAD-dependent sirtuin 5 lysine deacylase (KDAC) enzyme
-
A.S. Madsen, and C.A. Olsen Substrates for efficient fluorometric screening employing the NAD-dependent sirtuin 5 lysine deacylase (KDAC) enzyme J. Med. Chem. 55 2012 5582 5590
-
(2012)
J. Med. Chem.
, vol.55
, pp. 5582-5590
-
-
Madsen, A.S.1
Olsen, C.A.2
-
27
-
-
0022382083
-
Channeling of ammonia from glutaminase to carbamoyl-phosphate synthetase in liver mitochondria
-
A.J. Meijer Channeling of ammonia from glutaminase to carbamoyl-phosphate synthetase in liver mitochondria FEBS Lett. 191 1985 249 251
-
(1985)
FEBS Lett.
, vol.191
, pp. 249-251
-
-
Meijer, A.J.1
-
28
-
-
0021273547
-
Malonate, malonyl-coenzyme A, and acetyl-coenzyme A in developing rat brain
-
E.J. Mitzen, and A.H. Koeppen Malonate, malonyl-coenzyme A, and acetyl-coenzyme A in developing rat brain J. Neurochem. 43 1984 499 506
-
(1984)
J. Neurochem.
, vol.43
, pp. 499-506
-
-
Mitzen, E.J.1
Koeppen, A.H.2
-
29
-
-
65249087389
-
SIRT5 deacetylates carbamoyl phosphate synthetase 1 and regulates the urea cycle
-
T. Nakagawa, D.J. Lomb, M.C. Haigis, and L. Guarente SIRT5 deacetylates carbamoyl phosphate synthetase 1 and regulates the urea cycle Cell 137 2009 560 570
-
(2009)
Cell
, vol.137
, pp. 560-570
-
-
Nakagawa, T.1
Lomb, D.J.2
Haigis, M.C.3
Guarente, L.4
-
30
-
-
84880791239
-
SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways
-
J. Park, Y. Chen, D.X. Tishkoff, C. Peng, M. Tan, L. Dai, Z. Xie, Y. Zhang, B.M. Zwaans, and M.E. Skinner et al. SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways Mol. Cell 50 2013 919 930
-
(2013)
Mol. Cell
, vol.50
, pp. 919-930
-
-
Park, J.1
Chen, Y.2
Tishkoff, D.X.3
Peng, C.4
Tan, M.5
Dai, L.6
Xie, Z.7
Zhang, Y.8
Zwaans, B.M.9
Skinner, M.E.10
-
31
-
-
83055173304
-
The first identification of lysine malonylation substrates and its regulatory enzyme
-
M111.012658
-
C. Peng, Z. Lu, Z. Xie, Z. Cheng, Y. Chen, M. Tan, H. Luo, Y. Zhang, W. He, and K. Yang et al. The first identification of lysine malonylation substrates and its regulatory enzyme Mol. Cell Proteomics 10 2011 M111.012658
-
(2011)
Mol. Cell Proteomics
, vol.10
-
-
Peng, C.1
Lu, Z.2
Xie, Z.3
Cheng, Z.4
Chen, Y.5
Tan, M.6
Luo, H.7
Zhang, Y.8
He, W.9
Yang, K.10
-
32
-
-
0019312952
-
A rapid colorimetric assay for carbamyl phosphate synthetase i
-
D.L. Pierson A rapid colorimetric assay for carbamyl phosphate synthetase I J. Biochem. Biophys. Methods 3 1980 31 37
-
(1980)
J. Biochem. Biophys. Methods
, vol.3
, pp. 31-37
-
-
Pierson, D.L.1
-
33
-
-
4544243684
-
Coenzyme specificity of Sir2 protein deacetylases: Implications for physiological regulation
-
M.T. Schmidt, B.C. Smith, M.D. Jackson, and J.M. Denu Coenzyme specificity of Sir2 protein deacetylases: implications for physiological regulation J. Biol. Chem. 279 2004 40122 40129
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 40122-40129
-
-
Schmidt, M.T.1
Smith, B.C.2
Jackson, M.D.3
Denu, J.M.4
-
34
-
-
33745557847
-
Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription
-
H. Takahashi, J.M. McCaffery, R.A. Irizarry, and J.D. Boeke Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription Mol. Cell 23 2006 207 217
-
(2006)
Mol. Cell
, vol.23
, pp. 207-217
-
-
Takahashi, H.1
McCaffery, J.M.2
Irizarry, R.A.3
Boeke, J.D.4
-
35
-
-
80052942443
-
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification
-
M. Tan, H. Luo, S. Lee, F. Jin, J.S. Yang, E. Montellier, T. Buchou, Z. Cheng, S. Rousseaux, and N. Rajagopal et al. Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification Cell 146 2011 1016 1028
-
(2011)
Cell
, vol.146
, pp. 1016-1028
-
-
Tan, M.1
Luo, H.2
Lee, S.3
Jin, F.4
Yang, J.S.5
Montellier, E.6
Buchou, T.7
Cheng, Z.8
Rousseaux, S.9
Rajagopal, N.10
-
37
-
-
0033596743
-
Carbamoyl phosphate synthetase: Closure of the B-domain as a result of nucleotide binding
-
J.B. Thoden, G. Wesenberg, F.M. Raushel, and H.M. Holden Carbamoyl phosphate synthetase: closure of the B-domain as a result of nucleotide binding Biochemistry 38 1999 2347 2357
-
(1999)
Biochemistry
, vol.38
, pp. 2347-2357
-
-
Thoden, J.B.1
Wesenberg, G.2
Raushel, F.M.3
Holden, H.M.4
-
38
-
-
32844454603
-
Histone demethylation by a family of JmjC domain-containing proteins
-
Y. Tsukada, J. Fang, H. Erdjument-Bromage, M.E. Warren, C.H. Borchers, P. Tempst, and Y. Zhang Histone demethylation by a family of JmjC domain-containing proteins Nature 439 2006 811 816
-
(2006)
Nature
, vol.439
, pp. 811-816
-
-
Tsukada, Y.1
Fang, J.2
Erdjument-Bromage, H.3
Warren, M.E.4
Borchers, C.H.5
Tempst, P.6
Zhang, Y.7
-
39
-
-
78649328799
-
Sirtuin regulation of mitochondria: Energy production, apoptosis, and signaling
-
E. Verdin, M.D. Hirschey, L.W. Finley, and M.C. Haigis Sirtuin regulation of mitochondria: energy production, apoptosis, and signaling Trends Biochem. Sci. 35 2010 669 675
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 669-675
-
-
Verdin, E.1
Hirschey, M.D.2
Finley, L.W.3
Haigis, M.C.4
-
40
-
-
84885155285
-
Widespread and enzyme-independent Nε-acetylation and Nε-succinylation of proteins in the chemical conditions of the mitochondrial matrix
-
G.R. Wagner, and R.M. Payne Widespread and enzyme-independent Nε-acetylation and Nε-succinylation of proteins in the chemical conditions of the mitochondrial matrix J. Biol. Chem. 288 2013 29036 29045
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 29036-29045
-
-
Wagner, G.R.1
Payne, R.M.2
-
41
-
-
84883307077
-
Lysine succinylation is a frequently occurring modification in prokaryotes and eukaryotes and extensively overlaps with acetylation
-
B.T. Weinert, C. Scholz, S.A. Wagner, V. Iesmantavicius, D. Su, J.A. Daniel, and C. Choudhary Lysine succinylation is a frequently occurring modification in prokaryotes and eukaryotes and extensively overlaps with acetylation Cell Rep. 4 2013 842 851
-
(2013)
Cell Rep.
, vol.4
, pp. 842-851
-
-
Weinert, B.T.1
Scholz, C.2
Wagner, S.A.3
Iesmantavicius, V.4
Su, D.5
Daniel, J.A.6
Choudhary, C.7
-
42
-
-
66249105703
-
ATP-citrate lyase links cellular metabolism to histone acetylation
-
K.E. Wellen, G. Hatzivassiliou, U.M. Sachdeva, T.V. Bui, J.R. Cross, and C.B. Thompson ATP-citrate lyase links cellular metabolism to histone acetylation Science 324 2009 1076 1080
-
(2009)
Science
, vol.324
, pp. 1076-1080
-
-
Wellen, K.E.1
Hatzivassiliou, G.2
Sachdeva, U.M.3
Bui, T.V.4
Cross, J.R.5
Thompson, C.B.6
-
43
-
-
84861163510
-
Lysine succinylation and lysine malonylation in histones
-
Z. Xie, J. Dai, L. Dai, M. Tan, Z. Cheng, Y. Wu, J.D. Boeke, and Y. Zhao Lysine succinylation and lysine malonylation in histones Mol. Cell. Proteomics 11 2012 100 107
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 100-107
-
-
Xie, Z.1
Dai, J.2
Dai, L.3
Tan, M.4
Cheng, Z.5
Wu, Y.6
Boeke, J.D.7
Zhao, Y.8
-
44
-
-
84864996189
-
Mechanistic insights into the regulation of metabolic enzymes by acetylation
-
Y. Xiong, and K.L. Guan Mechanistic insights into the regulation of metabolic enzymes by acetylation J. Cell Biol. 198 2012 155 164
-
(2012)
J. Cell Biol.
, vol.198
, pp. 155-164
-
-
Xiong, Y.1
Guan, K.L.2
-
45
-
-
78650516004
-
Identification of lysine succinylation as a new post-translational modification
-
Z. Zhang, M. Tan, Z. Xie, L. Dai, Y. Chen, and Y. Zhao Identification of lysine succinylation as a new post-translational modification Nat. Chem. Biol. 7 2011 58 63
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 58-63
-
-
Zhang, Z.1
Tan, M.2
Xie, Z.3
Dai, L.4
Chen, Y.5
Zhao, Y.6
|