Capturing the hemoglobin allosteric transition in a single crystal form

Journal of the American Chemical Society

Volumn 136, Issue 13, 2014, Pages 5097-5105

  Shibayama, Naoya ^a   Sugiyama, Kanako ^b   Tame, Jeremy R H ^b   Park, Sam Yong ^b  

^a JICHI MEDICAL UNIVERSITY   (Japan)

^b YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEINS; X RAY DIFFRACTION ANALYSIS;

ALLOSTERIC TRANSITION; CONFORMATIONAL SPACE; CONFORMATIONAL TRANSITIONS; CONVENTIONAL TECHNIQUES; EQUILIBRIUM MEASUREMENTS; OLIGOMERIC PROTEINS; QUATERNARY STRUCTURE; SOLUTION CONDITIONS;

HEMOGLOBIN;

DIMER; FERROUS ION; HEMOGLOBIN; NICKEL; OXYGEN; OXYHEMOGLOBIN; CARBON MONOXIDE;

ALLOSTERISM; ARTICLE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; CRYSTALLIZATION; DISSOCIATION; EQUILIBRIUM CONSTANT; HINGE REGION; HYDROGEN BOND; LIGAND BINDING; MICROSPECTROPHOTOMETRY; OXYGEN AFFINITY; PROTEIN CROSS LINKING; PROTEIN QUATERNARY STRUCTURE; SYNCHROTRON RADIATION; X RAY DIFFRACTION; CHEMICAL STRUCTURE; CHEMISTRY; HUMAN; METABOLISM; PROTEIN CONFORMATION; PROTEIN MULTIMERIZATION; X RAY CRYSTALLOGRAPHY;

ALLOSTERIC REGULATION; CARBON MONOXIDE; CRYSTALLOGRAPHY, X-RAY; HEMOGLOBINS; HUMANS; MODELS, MOLECULAR; OXYGEN; PROTEIN CONFORMATION; PROTEIN MULTIMERIZATION;

EID: 84897559849     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja500380e     Document Type: Article

References (51)

1. Baldwin, J.; Chothia, C. J. Mol. Biol. 1979, 129, 175-220
2. Perutz, M. F. Q. Rev. Biophys. 1989, 22, 139-237
3. Monod, J.; Wyman, J.; Changeux, J. P. J. Mol. Biol. 1965, 12, 88-118
4. Silva, M. M.; Rogers, P. H.; Arnone, A. J. Biol. Chem. 1992, 267, 17248-17256
5. Janin, J.; Wodak, S. J. Proteins 1993, 15, 1-4
6. Srinivasan, R.; Rose, G. D. Proc. Natl. Acad. Sci. U. S. A. 1994, 91, 11113-11117
7. Tame, J. R. H. Trends Biochem. Sci. 1999, 24, 372-377
8. Safo, M. K.; Abraham, D. J. Biochemistry 2005, 44, 8347-8359
9. Lukin, J. A.; Kontaxis, G.; Simplaceanu, V.; Yuan, Y.; Bax, A.; Ho, C. Proc. Natl. Acad. Sci. U. S. A. 2003, 100, 517-520
10. Makowski, L.; Bardhan, J.; Gore, D.; Lal, J.; Mandava, S.; Park, S.; Rodi, D. J.; Ho, N. T.; Ho, C.; Fischetti, R. F. J. Mol. Biol. 2011, 408, 909-921
11. Mozzarelli, A.; Rivetti, C.; Rossi, G. L.; Henry, E. R.; Eaton, W. A. Nature 1991, 351, 416-419
12. Imai, K. J. Mol. Biol. 1979, 133, 233-247
13. Rivetti, C.; Mozzarelli, A.; Rossi, G. L.; Henry, E. R.; Eaton, W. A. Biochemistry 1993, 32, 2888-2906
14. Mozzarelli, A.; Rivetti, C.; Rossi, G. L.; Eaton, W. A.; Henry, E. R. Protein Sci. 1997, 6, 484-489
15. Shibayama, N.; Sugiyama, K.; Park, S. Y. J. Biol. Chem. 2011, 286, 33661-33668
16. Miyazaki, G.; Morimoto, H.; Yun, K. M.; Park, S. Y.; Nakagawa, A.; Minagawa, H.; Shibayama, N. J. Mol. Biol. 1999, 292, 1121-1136
17. Minton, A. P.; Imai, K. Proc. Natl. Acad. Sci. U. S. A. 1974, 71, 1418-1421
18. Colombo, M. F.; Seixas, F. A. V. Biochemistry 1999, 38, 11741-11748
19. Shibayama, N.; Saigo, S. FEBS Lett. 2001, 492, 50-53
20. Shibayama, N.; Imai, K.; Hirata, H.; Hiraiwa, H.; Morimoto, H.; Saigo, S. Biochemistry 1991, 30, 8158-8165
21. Shibayama, N.; Imai, K.; Morimoto, H.; Saigo, S. Biochemistry 1995, 34, 4773-4780
22. Benesch, R.; Benesch, R. E.; Macduff, G. Science 1964, 144, 68-69
23. Otwinowski, Z.; Minor, W. Methods Enzymol. 1997, 276, 307-326
24. Biswal, B. K.; Vijayan, M. Curr. Sci. 2001, 81, 1100-1105
25. Collaborative Computational Project, Number 4. Acta Crystallogr., Sect. D: Biol. Crystallogr. 1994, 50, 760-763.
26. Park, S. Y.; Yokoyama, T.; Shibayama, N.; Shiro, Y.; Tame, J. R. H. J. Mol. Biol. 2006, 360, 690-701
27. Emsley, P.; Cowtan, K. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 2126-2132
28. Brünger, A. T.; Adams, P. D.; Clore, G. M.; DeLano, W. L.; Gros, P.; Grosse-Kunstleve, R. W.; Jiang, J. S.; Kuszewski, J.; Nilges, M.; Pannu, N. S.; Read, R. J.; Rice, L. M.; Simonson, T.; Warren, G. L. Acta Crystallogr., Sect. D: Biol. Crystallogr. 1998, 54, 905-921
29. Laskowski, R. A.; Moss, D. S.; Thornton, J. M. J. Mol. Biol. 1993, 231, 1049-1067
30. Shibayama, N.; Morimoto, H.; Miyazaki, G. J. Mol. Biol. 1986, 192, 323-329
31. Shibayama, N.; Morimoto, H.; Kitagawa, T. J. Mol. Biol. 1986, 192, 331-336
32. Park, S. Y.; Shibayama, N.; Hiraki, T.; Tame, J. R. H. Biochemistry 2004, 43, 8711-8717
33. Dey, S.; Chakrabarti, P.; Janin, J. Proteins 2011, 79, 2861-2870
34. Ren, Z. PLoS One 2013, 8, e77141
35. Shibayama, N. In Hemoglobin: Recent Developments and Topics; Nagai, M., Ed.; Research Signpost: Trivandrum, India, 2011; pp 123-142.
36. Sawicki, C. A.; Gibson, Q. H. J. Biol. Chem. 1977, 252, 7538-7547
37. Philo, J. S.; Lary, J. W. J. Biol. Chem. 1990, 265, 139-143
38. Hewitt, J. A.; Kilmartin, J. V.; Eyck, L. F. T.; Perutz, M. F. Proc. Natl. Acad. Sci. U. S. A. 1972, 69, 203-207
39. Tyuma, I.; Shimizu, K.; Imai, K. Biochem. Biophys. Res. Commun. 1971, 43, 423-428
40. Shibayama, N. FEBS Lett. 2012, 586, 74-78
41. Poyart, C. F.; Bursaux, E.; Bohn, B. Eur. J. Biochem. 1978, 87, 75-83
42. Kilmartin, J. V.; Imai, K.; Jones, R. T.; Faruqui, A. R.; Fogg, J.; Baldwin, J. M. Biochim. Biophys. Acta 1978, 534, 15-25
43. Mihailescu, M. R.; Fronticelli, C.; Russu, I. M. Proteins 2001, 44, 73-78
44. Kavanaugh, J. S.; Chafin, D. R.; Arnone, A.; Mozzarelli, A.; Rivetti, C.; Rossi, G. L.; Kwiatkowski, L. D.; Noble, R. W. J. Mol. Biol. 1995, 248, 136-150
45. Bettati, S.; Kwiatkowski, L. D.; Kavanaugh, J. S.; Mozzarelli, A.; Arnone, A.; Rossi, G. L.; Noble, R. W. J. Biol. Chem. 1997, 272, 33077-33084
46. Schumacher, M. A.; Dixon, M. M.; Kluger, R.; Jones, R. T.; Brennan, R. G. Nature 1995, 375, 84-87
47. Pauling, L. Proc. Natl. Acad. Sci. U. S. A. 1935, 21, 186-191
48. Koshland, D. E.; Nemethy, G.; Filmer, D. Biochemistry 1966, 5, 365-385
49. Szabo, A.; Karplus, M. J. Mol. Biol. 1972, 72, 163-197
50. Henry, E. R.; Bettati, S.; Hofrichter, J.; Eaton, W. A. Biophys. Chem. 2002, 98, 149-164
51. Yonetani, T.; Park, S.; Tsuneshige, A.; Imai, K.; Kanaori, K. J. Biol. Chem. 2002, 277, 34508-34520