-
1
-
-
78651491371
-
Microarray-based gene expression studies in ovarian cancer
-
Chon HS, Lancaster JM. Microarray-based gene expression studies in ovarian cancer. Canc Contr 2011, 18(1):8-15.
-
(2011)
Canc Contr
, vol.18
, Issue.1
, pp. 8-15
-
-
Chon, H.S.1
Lancaster, J.M.2
-
2
-
-
34547665469
-
Comparing microarray studies
-
10.1007/978-1-59745-390-5_8, 17634614
-
Suarez-Farinas M, Magnasco MO. Comparing microarray studies. Methods Mol Biol 2007, 377:139-152. 10.1007/978-1-59745-390-5_8, 17634614.
-
(2007)
Methods Mol Biol
, vol.377
, pp. 139-152
-
-
Suarez-Farinas, M.1
Magnasco, M.O.2
-
3
-
-
84861793773
-
Gene set enrichment analysis:performance evaluation and usage guidelines
-
10.1093/bib/bbr049, 3357488, 21900207
-
Hung JH, Yang TH, Hu Z, Weng Z, DeLisi C. Gene set enrichment analysis:performance evaluation and usage guidelines. Brief Bioinform 2012, 13(3):281-291. 10.1093/bib/bbr049, 3357488, 21900207.
-
(2012)
Brief Bioinform
, vol.13
, Issue.3
, pp. 281-291
-
-
Hung, J.H.1
Yang, T.H.2
Hu, Z.3
Weng, Z.4
DeLisi, C.5
-
4
-
-
84872029236
-
Chapter 9:analyses using disease ontologies
-
10.1371/journal.pcbi.1002827, 3531278, 23300417
-
Shah NH, Cole T, Musen MA. Chapter 9:analyses using disease ontologies. PLoS Comput Biol 2012, 8(12):e1002827. 10.1371/journal.pcbi.1002827, 3531278, 23300417.
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.12
-
-
Shah, N.H.1
Cole, T.2
Musen, M.A.3
-
5
-
-
27344435774
-
Gene set enrichment analysis:a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. Gene set enrichment analysis:a knowledge-based approach for interpreting genome-wide expression profiles. P Natl Acad Sci USA 2005, 102(43):15545-15550.
-
(2005)
P Natl Acad Sci USA
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
6
-
-
25444447098
-
Workflows in bioinformatics:meta-analysis and prototype implementation of a workflow generator
-
10.1186/1471-2105-6-87, 1090554, 15813976
-
Garcia Castro A, Thoraval S, Garcia LJ, Ragan MA. Workflows in bioinformatics:meta-analysis and prototype implementation of a workflow generator. BMC Bioinformatics 2005, 6:87. 10.1186/1471-2105-6-87, 1090554, 15813976.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 87
-
-
Garcia Castro, A.1
Thoraval, S.2
Garcia, L.J.3
Ragan, M.A.4
-
7
-
-
33747109441
-
AMDA:an R package for the automated microarray data analysis
-
10.1186/1471-2105-7-335, 1534071, 16824223
-
Pelizzola M, Pavelka N, Foti M, Ricciardi-Castagnoli P. AMDA:an R package for the automated microarray data analysis. BMC Bioinformatics 2006, 7:335. 10.1186/1471-2105-7-335, 1534071, 16824223.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 335
-
-
Pelizzola, M.1
Pavelka, N.2
Foti, M.3
Ricciardi-Castagnoli, P.4
-
8
-
-
84865098402
-
GO-Elite:a flexible solution for pathway and ontology over-representation
-
10.1093/bioinformatics/bts366, 3413395, 22743224
-
Zambon AC, Gaj S, Ho I, Hanspers K, Vranizan K, Evelo CT, Conklin BR, Pico AR, Salomonis N. GO-Elite:a flexible solution for pathway and ontology over-representation. Bioinformatics 2012, 28(16):2209-2210. 10.1093/bioinformatics/bts366, 3413395, 22743224.
-
(2012)
Bioinformatics
, vol.28
, Issue.16
, pp. 2209-2210
-
-
Zambon, A.C.1
Gaj, S.2
Ho, I.3
Hanspers, K.4
Vranizan, K.5
Evelo, C.T.6
Conklin, B.R.7
Pico, A.R.8
Salomonis, N.9
-
10
-
-
84861057273
-
Workflows for microarray data processing in the Kepler environment
-
10.1186/1471-2105-13-102, 3431220, 22594911
-
Stropp T, McPhillips T, Ludascher B, Bieda M. Workflows for microarray data processing in the Kepler environment. BMC Bioinformatics 2012, 13:102. 10.1186/1471-2105-13-102, 3431220, 22594911.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 102
-
-
Stropp, T.1
McPhillips, T.2
Ludascher, B.3
Bieda, M.4
-
11
-
-
5444235762
-
Kepler:an extensible system for design and execution of scientific workflows
-
IEEE Computer Society
-
Altintas I, Berkley C, Jaeger E, Jones M, Ludaescher B, Mock S. Kepler:an extensible system for design and execution of scientific workflows. Proceedings of 16th International Conference on Scientific and Statistical Database Management 2004, 423-424. IEEE Computer Society.
-
(2004)
Proceedings of 16th International Conference on Scientific and Statistical Database Management
, pp. 423-424
-
-
Altintas, I.1
Berkley, C.2
Jaeger, E.3
Jones, M.4
Ludaescher, B.5
Mock, S.6
-
12
-
-
77954250511
-
AltAnalyze and DomainGraph:analyzing and visualizing exon expression data
-
10.1093/nar/gkq405, 2896198, 20513647
-
Emig D, Salomonis N, Baumbach J, Lengauer T, Conklin BR, Albrecht M. AltAnalyze and DomainGraph:analyzing and visualizing exon expression data. Nucleic Acids Res 2010, 38:W755-W762. 10.1093/nar/gkq405, 2896198, 20513647.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Emig, D.1
Salomonis, N.2
Baumbach, J.3
Lengauer, T.4
Conklin, B.R.5
Albrecht, M.6
-
13
-
-
79952014397
-
Bioinformatics techniques in microarray research:applied microarray data analysis using R and SAS software
-
10.1007/978-1-60761-820-1_25, 20717798
-
Demmer RT, Pavlidis P, Papapanou PN. Bioinformatics techniques in microarray research:applied microarray data analysis using R and SAS software. Methods Mol Biol 2010, 666:395-417. 10.1007/978-1-60761-820-1_25, 20717798.
-
(2010)
Methods Mol Biol
, vol.666
, pp. 395-417
-
-
Demmer, R.T.1
Pavlidis, P.2
Papapanou, P.N.3
-
14
-
-
69449095468
-
Hypoxia-induced mediators and neurologic disease
-
10.1212/WNL.0b013e3181b2a719, 19687457
-
Benarroch EE. Hypoxia-induced mediators and neurologic disease. Neurology 2009, 73(7):560-565. 10.1212/WNL.0b013e3181b2a719, 19687457.
-
(2009)
Neurology
, vol.73
, Issue.7
, pp. 560-565
-
-
Benarroch, E.E.1
-
15
-
-
84887340602
-
The medical use of oxygen:a time for critical reappraisal
-
10.1111/joim.12139, 24206183
-
Sjoberg F, Singer M. The medical use of oxygen:a time for critical reappraisal. J Intern Med 2013, 274(6):505-528. 10.1111/joim.12139, 24206183.
-
(2013)
J Intern Med
, vol.274
, Issue.6
, pp. 505-528
-
-
Sjoberg, F.1
Singer, M.2
-
16
-
-
78149433910
-
Chronic hypoxia impairs muscle function in the drosophila model of Duchenne's muscular dystrophy (DMD)
-
10.1371/journal.pone.0013450, 2958114, 20975992
-
Mosqueira M, Willmann G, Ruohola-Baker H, Khurana TS. Chronic hypoxia impairs muscle function in the drosophila model of Duchenne's muscular dystrophy (DMD). Plos One 2010, 5(10):e13450. 10.1371/journal.pone.0013450, 2958114, 20975992.
-
(2010)
Plos One
, vol.5
, Issue.10
-
-
Mosqueira, M.1
Willmann, G.2
Ruohola-Baker, H.3
Khurana, T.S.4
-
17
-
-
65549159551
-
Distinct mechanisms underlying tolerance to intermittent and constant hypoxia in drosophila melanogaster
-
10.1371/journal.pone.0005371, 2670512, 19401761
-
Azad P, Zhou D, Russo E, Haddad GG. Distinct mechanisms underlying tolerance to intermittent and constant hypoxia in drosophila melanogaster. Plos One 2009, 4(4):e5371. 10.1371/journal.pone.0005371, 2670512, 19401761.
-
(2009)
Plos One
, vol.4
, Issue.4
-
-
Azad, P.1
Zhou, D.2
Russo, E.3
Haddad, G.G.4
-
18
-
-
77955390642
-
Experimental selection for drosophila survival in extremely high O2 environments
-
10.1371/journal.pone.0011701, 2909141, 20668515
-
Zhao HW, Zhou D, Nizet V, Haddad GG. Experimental selection for drosophila survival in extremely high O2 environments. Plos One 2010, 5(7):e11701. 10.1371/journal.pone.0011701, 2909141, 20668515.
-
(2010)
Plos One
, vol.5
, Issue.7
-
-
Zhao, H.W.1
Zhou, D.2
Nizet, V.3
Haddad, G.G.4
-
19
-
-
84866344659
-
Gene expression profiles of four heat shock proteins in response to different acute stresses in shrimp, Litopenaeus vannamei
-
Qian Z, Liu X, Wang L, Wang X, Li Y, Xiang J, Wang P. Gene expression profiles of four heat shock proteins in response to different acute stresses in shrimp, Litopenaeus vannamei. Comp Biochem Physiol Toxicol Pharmacol 2012, 156(3-4):211-220.
-
(2012)
Comp Biochem Physiol Toxicol Pharmacol
, vol.156
, Issue.3-4
, pp. 211-220
-
-
Qian, Z.1
Liu, X.2
Wang, L.3
Wang, X.4
Li, Y.5
Xiang, J.6
Wang, P.7
-
20
-
-
53149135477
-
Key issues in conducting a meta-analysis of gene expression microarray datasets
-
10.1371/journal.pmed.0050184, 2528050, 18767902
-
Ramasamy A, Mondry A, Holmes CC, Altman DG. Key issues in conducting a meta-analysis of gene expression microarray datasets. PLoS medicine 2008, 5(9):e184. 10.1371/journal.pmed.0050184, 2528050, 18767902.
-
(2008)
PLoS medicine
, vol.5
, Issue.9
-
-
Ramasamy, A.1
Mondry, A.2
Holmes, C.C.3
Altman, D.G.4
-
21
-
-
33845432928
-
Adjusting batch effects in microarray expression data using empirical Bayes methods
-
10.1093/biostatistics/kxj037, 16632515
-
Johnson WE, Li C, Rabinovic A. Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 2007, 8(1):118-127. 10.1093/biostatistics/kxj037, 16632515.
-
(2007)
Biostatistics
, vol.8
, Issue.1
, pp. 118-127
-
-
Johnson, W.E.1
Li, C.2
Rabinovic, A.3
-
22
-
-
77950949307
-
Dealing with missing values in large-scale studies:microarray data imputation and beyond
-
10.1093/bib/bbp059, 19965979
-
Aittokallio T. Dealing with missing values in large-scale studies:microarray data imputation and beyond. Brief Bioinform 2010, 11(2):253-264. 10.1093/bib/bbp059, 19965979.
-
(2010)
Brief Bioinform
, vol.11
, Issue.2
, pp. 253-264
-
-
Aittokallio, T.1
-
23
-
-
79953089162
-
Meta-analysis of gene expression microarrays with missing replicates
-
10.1186/1471-2105-12-84, 3224118, 21435268
-
Shi F, Abraham G, Leckie C, Haviv I, Kowalczyk A. Meta-analysis of gene expression microarrays with missing replicates. BMC Bioinformatics 2011, 12:84. 10.1186/1471-2105-12-84, 3224118, 21435268.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 84
-
-
Shi, F.1
Abraham, G.2
Leckie, C.3
Haviv, I.4
Kowalczyk, A.5
|