메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Meta-analysis of gene expression microarrays with missing replicates

Author keywords

[No Author keywords available]

Indexed keywords

BREAST CANCER; DIFFERENTIALLY EXPRESSED GENE; EFFECTIVE APPROACHES; FALSE DISCOVERY RATE; GASTRIC CANCERS; GENE EXPRESSION MICROARRAY; MICROARRAY EXPERIMENTS; STATISTICAL SIGNIFICANCE;

EID: 79953089162     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-84     Document Type: Article
Times cited : (3)

References (46)
  • 1
    • 27844594381 scopus 로고    scopus 로고
    • Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes
    • 10.1186/1471-2105-6-265, 1312314, 16271137
    • Warnat P, Eils R, Brors B. Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC Bioinformatics 2005, 6:265+. 10.1186/1471-2105-6-265, 1312314, 16271137.
    • (2005) BMC Bioinformatics , vol.6
    • Warnat, P.1    Eils, R.2    Brors, B.3
  • 2
    • 34548127285 scopus 로고    scopus 로고
    • Large-scale integration of cancer microarray data identifies a robust common cancer signature
    • 10.1186/1471-2105-8-275, 1950528, 17663766
    • Xu L, Geman D, Winslow R. Large-scale integration of cancer microarray data identifies a robust common cancer signature. BMC Bioinformatics 2007, 8:275+. 10.1186/1471-2105-8-275, 1950528, 17663766.
    • (2007) BMC Bioinformatics , vol.8
    • Xu, L.1    Geman, D.2    Winslow, R.3
  • 3
    • 41749099668 scopus 로고    scopus 로고
    • Merging microarray data from separate breast cancer studies provides a robust prognostic test
    • 10.1186/1471-2105-9-125, 2409450, 18304324
    • Xu L, Tan AC, Winslow RL, Geman D. Merging microarray data from separate breast cancer studies provides a robust prognostic test. BMC Bioinformatics 2008, 9:125+. 10.1186/1471-2105-9-125, 2409450, 18304324.
    • (2008) BMC Bioinformatics , vol.9
    • Xu, L.1    Tan, A.C.2    Winslow, R.L.3    Geman, D.4
  • 5
    • 0036682376 scopus 로고    scopus 로고
    • Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer
    • Rhodes DR, Barrette TR, Rubin MA, Ghosh D, Chinnaiyan AM. Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer. Cancer Research 2002, 62(15):4427-4433.
    • (2002) Cancer Research , vol.62 , Issue.15 , pp. 4427-4433
    • Rhodes, D.R.1    Barrette, T.R.2    Rubin, M.A.3    Ghosh, D.4    Chinnaiyan, A.M.5
  • 6
    • 4944232237 scopus 로고    scopus 로고
    • Combining multiple microarray studies and modeling interstudy variation
    • Choi JK, Yu U, Kim S, Yoo OJ. Combining multiple microarray studies and modeling interstudy variation. Bioinformatics 2003, 19(Suppl 1).
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Choi, J.K.1    Yu, U.2    Kim, S.3    Yoo, O.J.4
  • 7
    • 50649121884 scopus 로고    scopus 로고
    • MAID: An effect size based model for microarray data integration across laboratories and platforms
    • 10.1186/1471-2105-9-305, 2483727, 18616827
    • Borozan I, Chen L, Paeper B, Heathcote JE, Edwards AM, Katze M, Zhang ZL, Mcgilvray ID. MAID: An effect size based model for microarray data integration across laboratories and platforms. BMC Bioinformatics 2008, 9:305+. 10.1186/1471-2105-9-305, 2483727, 18616827.
    • (2008) BMC Bioinformatics , vol.9
    • Borozan, I.1    Chen, L.2    Paeper, B.3    Heathcote, J.E.4    Edwards, A.M.5    Katze, M.6    Zhang, Z.L.7    Mcgilvray, I.D.8
  • 8
    • 70349984003 scopus 로고    scopus 로고
    • Moderated effect size and P-value combinations for microarray meta-analyses
    • 10.1093/bioinformatics/btp444, 19628502
    • Marot G, Foulley J, Mayer C, Jaffrezic F. Moderated effect size and P-value combinations for microarray meta-analyses. Bioinformatics 2009, 25(20):2692-2699. 10.1093/bioinformatics/btp444, 19628502.
    • (2009) Bioinformatics , vol.25 , Issue.20 , pp. 2692-2699
    • Marot, G.1    Foulley, J.2    Mayer, C.3    Jaffrezic, F.4
  • 9
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • 10.1016/j.febslet.2004.07.055, 15327980
    • Breitling R, Armengaud P, Amtmann A, Herzyk P. Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Letters 2004, 573(1-3):83-92. 10.1016/j.febslet.2004.07.055, 15327980.
    • (2004) FEBS Letters , vol.573 , Issue.1-3 , pp. 83-92
    • Breitling, R.1    Armengaud, P.2    Amtmann, A.3    Herzyk, P.4
  • 10
    • 60849090744 scopus 로고    scopus 로고
    • A statistical framework for integrating two microarray data sets in differential expression analysis
    • 10.1186/1471-2105-10-S1-S23, 2648727, 19208123
    • Lai Y, Eckenrode SE, She JX. A statistical framework for integrating two microarray data sets in differential expression analysis. BMC bioinformatics 2009, 10(Suppl 1). 10.1186/1471-2105-10-S1-S23, 2648727, 19208123.
    • (2009) BMC bioinformatics , vol.10 , Issue.SUPPL. 1
    • Lai, Y.1    Eckenrode, S.E.2    She, J.X.3
  • 11
    • 77952844021 scopus 로고    scopus 로고
    • Meta-analysis for pathway enrichment analysis when combining multiple genomic studies
    • 10.1093/bioinformatics/btq148, 20410053
    • Shen K, Tseng GC. Meta-analysis for pathway enrichment analysis when combining multiple genomic studies. Bioinformatics 2010, 26(10):1316-1323. 10.1093/bioinformatics/btq148, 20410053.
    • (2010) Bioinformatics , vol.26 , Issue.10 , pp. 1316-1323
    • Shen, K.1    Tseng, G.C.2
  • 12
    • 67649205713 scopus 로고    scopus 로고
    • A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide
    • 10.1093/bioinformatics/btp290, 2732319, 19447786
    • Wren JD. A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide. Bioinformatics 2009, 25(13):1694-1701. 10.1093/bioinformatics/btp290, 2732319, 19447786.
    • (2009) Bioinformatics , vol.25 , Issue.13 , pp. 1694-1701
    • Wren, J.D.1
  • 13
    • 1542309545 scopus 로고    scopus 로고
    • Statistical issues and methods for meta-analysis of microarray data: a case study in prostate cancer
    • Ghosh D, Barette TR, Rhodes D, Chinnaiyan AM. Statistical issues and methods for meta-analysis of microarray data: a case study in prostate cancer. Functional & Integrative Genomics 2003, 3(4):180-188.
    • (2003) Functional & Integrative Genomics , vol.3 , Issue.4 , pp. 180-188
    • Ghosh, D.1    Barette, T.R.2    Rhodes, D.3    Chinnaiyan, A.M.4
  • 15
    • 0038576352 scopus 로고    scopus 로고
    • Distinctive Patterns of Gene Expression in Premalignant Gastric Mucosa and Gastric Cancer
    • Boussioutas A. Distinctive Patterns of Gene Expression in Premalignant Gastric Mucosa and Gastric Cancer. Cancer Research 2003, (63):2569-2577.
    • (2003) Cancer Research , Issue.63 , pp. 2569-2577
    • Boussioutas, A.1
  • 16
    • 18644377695 scopus 로고    scopus 로고
    • Comprehensive analysis of the gene expression profiles in human gastric cancer cell lines
    • 10.1038/sj.onc.1205829, 12226758
    • Ji JF, Chen X, Leung SY, Chi JA, Chu KM, Yuen ST, Li R, Chan AS, Li JY, Dunphy N, So S. Comprehensive analysis of the gene expression profiles in human gastric cancer cell lines. Oncogene 2002, 21:6549-6556. 10.1038/sj.onc.1205829, 12226758.
    • (2002) Oncogene , vol.21 , pp. 6549-6556
    • Ji, J.F.1    Chen, X.2    Leung, S.Y.3    Chi, J.A.4    Chu, K.M.5    Yuen, S.T.6    Li, R.7    Chan, A.S.8    Li, J.Y.9    Dunphy, N.10    So, S.11
  • 18
    • 41049093347 scopus 로고
    • The Combination of Estimates from Different Experiments
    • Cochran WG. The Combination of Estimates from Different Experiments. Biometrics 1954, 10:101-129.
    • (1954) Biometrics , vol.10 , pp. 101-129
    • Cochran, W.G.1
  • 21
    • 12644292106 scopus 로고
    • The two histological main types of gastric carcinoma: difiuseand so-called intestinal-type carcinoma
    • Lauren P. The two histological main types of gastric carcinoma: difiuseand so-called intestinal-type carcinoma. Acta Path Microbiol Scand 1965, 64:31-49.
    • (1965) Acta Path Microbiol Scand , vol.64 , pp. 31-49
    • Lauren, P.1
  • 22
    • 53149135477 scopus 로고    scopus 로고
    • Key issues in conducting a meta-analysis of gene expression microarray datasets
    • 10.1371/journal.pmed.0050184, 2528050, 18767902
    • Ramasamy A, Mondry A, Holmes CC, A DG. Key issues in conducting a meta-analysis of gene expression microarray datasets. PLoS medicine 2008, 5(9):e184+. 10.1371/journal.pmed.0050184, 2528050, 18767902.
    • (2008) PLoS medicine , vol.5 , Issue.9
    • Ramasamy, A.1    Mondry, A.2    Holmes, C.C.3    A, D.G.4
  • 23
    • 0022992740 scopus 로고
    • Meta-analysis in clinical trials
    • 10.1016/0197-2456(86)90046-2, 3802833
    • DerSimonian R, Laird N. Meta-analysis in clinical trials. Controlled clinical trials 1986, 7(3):177-188. 10.1016/0197-2456(86)90046-2, 3802833.
    • (1986) Controlled clinical trials , vol.7 , Issue.3 , pp. 177-188
    • DerSimonian, R.1    Laird, N.2
  • 26
    • 77950949307 scopus 로고    scopus 로고
    • Dealing with missing values in large-scale studies: microarray data imputation and beyond
    • 10.1093/bib/bbp059, 19965979
    • Aittokallio T. Dealing with missing values in large-scale studies: microarray data imputation and beyond. Brief Bioinformatics 2010, 11(2):253-264. 10.1093/bib/bbp059, 19965979.
    • (2010) Brief Bioinformatics , vol.11 , Issue.2 , pp. 253-264
    • Aittokallio, T.1
  • 29
    • 70349853070 scopus 로고    scopus 로고
    • Metahdep: meta-analysis of hierarchically dependent gene expression studies
    • 10.1093/bioinformatics/btp468, 19648140
    • Stevens JR, Nicholas G. Metahdep: meta-analysis of hierarchically dependent gene expression studies. Bioinformatics (Oxford, England) 2009, 25(19):2619-2620. 10.1093/bioinformatics/btp468, 19648140.
    • (2009) Bioinformatics (Oxford, England) , vol.25 , Issue.19 , pp. 2619-2620
    • Stevens, J.R.1    Nicholas, G.2
  • 31
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • 10.1093/nar/30.1.207, 99122, 11752295
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Research 2002, 30:207-210. 10.1093/nar/30.1.207, 99122, 11752295.
    • (2002) Nucleic Acids Research , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 39
    • 58249103214 scopus 로고    scopus 로고
    • Cell cycle correlated genes dictate the prognostic power of breast cancer gene lists
    • 10.1186/1755-8794-1-11, 2396170, 18439262
    • Mosley J, Keri R. Cell cycle correlated genes dictate the prognostic power of breast cancer gene lists. BMC Medical Genomics 2008, 1:11+. 10.1186/1755-8794-1-11, 2396170, 18439262.
    • (2008) BMC Medical Genomics , vol.1
    • Mosley, J.1    Keri, R.2
  • 41
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: find statistically overrepresented Gene Ontologies within a group of genes
    • 10.1093/bioinformatics/bth088, 14962934
    • Beissbarth T, Speed TP. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 2004, 20(9):1464-1465. 10.1093/bioinformatics/bth088, 14962934.
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 42
    • 0029116029 scopus 로고
    • Molecular biology of gastric cancer
    • 10.1007/BF00294705, 7676688
    • Tahara E. Molecular biology of gastric cancer. World Journal of Surgery 1995, 19(4):484-488. 10.1007/BF00294705, 7676688.
    • (1995) World Journal of Surgery , vol.19 , Issue.4 , pp. 484-488
    • Tahara, E.1
  • 44
    • 0027333411 scopus 로고
    • Tumor Cell Interactions with the Extracellular Matrix During Invasion and Metastasis
    • 10.1146/annurev.cb.09.110193.002545, 8280471
    • Stetler-Stevenson WG, Aznavoorian S, Liotta LA. Tumor Cell Interactions with the Extracellular Matrix During Invasion and Metastasis. Annual Review of Cell Biology 1993, 9:541-573. 10.1146/annurev.cb.09.110193.002545, 8280471.
    • (1993) Annual Review of Cell Biology , vol.9 , pp. 541-573
    • Stetler-Stevenson, W.G.1    Aznavoorian, S.2    Liotta, L.A.3
  • 45
    • 44449099054 scopus 로고    scopus 로고
    • The Diasporin Pathway: a tumor progression-related transcriptional network that predicts breast cancer survival
    • 10.1007/s10585-008-9146-6, 2410042, 18301994
    • Crawford N, Walker R, Lukes L, Officewala J, Williams R, Hunter K. The Diasporin Pathway: a tumor progression-related transcriptional network that predicts breast cancer survival. Clinical and Experimental Metastasis 2008, 25(4):357-369. 10.1007/s10585-008-9146-6, 2410042, 18301994.
    • (2008) Clinical and Experimental Metastasis , vol.25 , Issue.4 , pp. 357-369
    • Crawford, N.1    Walker, R.2    Lukes, L.3    Officewala, J.4    Williams, R.5    Hunter, K.6
  • 46
    • 79952292444 scopus 로고    scopus 로고
    • Mutational Analysis of TTK Gene in Gastric and Colorectal Cancers with Microsatellite Instability
    • Ahn CH, Kim YR, Kim SS, Yoo NJ, Lee SH. Mutational Analysis of TTK Gene in Gastric and Colorectal Cancers with Microsatellite Instability. Cancer Treatment and Research 2009, 41(4):224-228.
    • (2009) Cancer Treatment and Research , vol.41 , Issue.4 , pp. 224-228
    • Ahn, C.H.1    Kim, Y.R.2    Kim, S.S.3    Yoo, N.J.4    Lee, S.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.