TasiRNAdb: A database of ta-siRNA regulatory pathways

Bioinformatics

Volumn 30, Issue 7, 2014, Pages 1045-1046

  Zhang, Changqing ^a   Li, Guangping ^b   Zhu, Shinong ^a   Zhang, Shuo ^c   Fang, Jinggui ^c  

^a JINLING INSTITUTE OF TECHNOLOGY   (China)

^b NANJING FORESTRY UNIVERSITY   (China)

^c NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; SMALL INTERFERING RNA;

ARTICLE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; NUCLEIC ACID DATABASE; PLANT; SEQUENCE ANALYSIS;

DATABASES, NUCLEIC ACID; GENE EXPRESSION REGULATION; MICRORNAS; PLANTS; RNA, SMALL INTERFERING; SEQUENCE ANALYSIS, RNA;

EID: 84897374023     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt746     Document Type: Article

References (12)

1. Allen, E. et al. (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell, 121, 207-221.
2. Backman, T.W. et al. (2008) Update of ASRP: the Arabidopsis small RNA project database. Nucleic Acids Res., 36, D982-D985.
3. Felippes, F.F. and Weigel, D. (2009) Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173. EMBO Rep., 10, 264-270.
4. Gasciolli, V. et al. (2005) Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr. Biol., 15, 1494-1500.
5. Johnson, C. et al. (2007) CSRDB: a small RNA integrated database and browser resource for cereals. Nucleic Acids Res., 35, D829-D833.
6. Lu, C. et al. (2006) MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res., 16, 1276-1288.
7. Nakano, M. et al. (2006) Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. Nucleic Acids Res., 34, D731-D735.
8. Rajagopalan, R. et al. (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev., 20, 3407-3425.
9. Wu, L. et al. (2012) Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation. Plant Physiol., 160, 990-999.
10. Yoshikawa, M. et al. (2005) A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev., 19, 2164-2175.
11. Zhang, C. et al. (2012) Identification of trans-acting siRNAs and their regulatory cascades in grapevine. Bioinformatics, 28, 2561-2568.
12. Zhang, C. et al. (2013) Cascading cis-Cleavage on transcript from trans-acting siRNA-producing locus 3. Int. J. Mol. Sci., 14, 14689-14699.