메뉴 건너뛰기




Volumn 28, Issue 20, 2012, Pages 2561-2568

Identification of trans-acting siRNAs and their regulatory cascades in grapevine

Author keywords

[No Author keywords available]

Indexed keywords

VITACEAE; VITIS; VITIS VINIFERA;

EID: 84870453549     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts500     Document Type: Article
Times cited : (42)

References (23)
  • 1
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during/raw-acting siRNA biogenesis in plants
    • Allen, E. et al. (2005) microRNA-directed phasing during/raw-acting siRNA biogenesis in plants. Cell, 121, 207-221.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1
  • 2
    • 33847652140 scopus 로고    scopus 로고
    • Bioinformatic prediction and experimental validation of a micro RNA-direc ted tandem trans-acting siRNA cascade in Arabidopsis
    • Chen, H.M. et al. (2007) Bioinformatic prediction and experimental validation of a micro RNA-direc ted tandem trans-acting siRNA cascade in Arabidopsis. Proc. Natl. Acad. Sei. U.S.A., 104, 3318-3323.
    • (2007) Proc. Natl. Acad. Sei. U.S.A. , vol.104 , pp. 3318-3323
    • Chen, H.M.1
  • 3
    • 77956989755 scopus 로고    scopus 로고
    • 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants
    • Chen, H.M. et al. (2010) 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc. Natl. Acad. Sei. U.S.A., 107, 15269-15274.
    • (2010) Proc. Natl. Acad. Sei. U.S.A. , vol.107 , pp. 15269-15274
    • Chen, H.M.1
  • 4
    • 77955418697 scopus 로고    scopus 로고
    • Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
    • Cuperus, J.T. et al. (2010) Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat. Struct. Mol. Biol., 17, 997-1003.
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 997-1003
    • Cuperus, J.T.1
  • 5
    • 48449098051 scopus 로고    scopus 로고
    • PssRNAMiner: A plant short small RNA regulatory cascade analysis server
    • Dai, X. and Zhao, P.X (2008) pssRNAMiner: a plant short small RNA regulatory cascade analysis server. Nucleic Acids Res., 36, W114-W118.
    • (2008) Nucleic Acids Res. , vol.36
    • Dai, X.1    Zhao, P.X.2
  • 6
    • 79959967431 scopus 로고    scopus 로고
    • PsRNATarget: A plant small RNA target analysis server
    • Dai, X. and Zhao, P.X (2011) psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res., 39, W155-W159.
    • (2011) Nucleic Acids Res. , vol.39
    • Dai, X.1    Zhao, P.X.2
  • 7
    • 71049136041 scopus 로고    scopus 로고
    • Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    • Hsieh, L.C. et al. (2009) Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol., 151, 2120-2132.
    • (2009) Plant Physiol. , vol.151 , pp. 2120-2132
    • Hsieh, L.C.1
  • 8
    • 79955908792 scopus 로고    scopus 로고
    • Specific impact of tobamovirus infection on the Arabidopsis small RNA profile
    • Hu, Q. et al. (2011) Specific impact of tobamovirus infection on the Arabidopsis small RNA profile. PloS One, 6, el9549.
    • (2011) PloS One , vol.6
    • Hu, Q.1
  • 9
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploi-dization in major angiosperm phyla
    • Jaillon, O. et al. (2007) The grapevine genome sequence suggests ancestral hexaploi-dization in major angiosperm phyla. Nature, 449, 463-467.
    • (2007) Nature , vol.449 , pp. 463-467
    • Jaillon, O.1
  • 10
    • 68149119262 scopus 로고    scopus 로고
    • Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    • Johnson, C. et al. (2009) Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res., 19, 1429-1440.
    • (2009) Genome Res. , vol.19 , pp. 1429-1440
    • Johnson, C.1
  • 11
    • 77956111169 scopus 로고    scopus 로고
    • Role of small RNAs in host-microbe interactions
    • Katiyar-Agarwal, S. and Jin, H (2010) Role of small RNAs in host-microbe interactions. Annu. Rev Phytopathol, 48, 225-246.
    • (2010) Annu. Rev Phytopathol , vol.48 , pp. 225-246
    • Katiyar-Agarwal, S.1    Jin, H.2
  • 12
    • 78049308083 scopus 로고    scopus 로고
    • Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome
    • Laubinger, S. et al. (2010) Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proc. Natl. Acad. Sei. U.S.A., 107, 17466-17473.
    • (2010) Proc. Natl. Acad. Sei. U.S.A. , vol.107 , pp. 17466-17473
    • Laubinger, S.1
  • 13
    • 33749404806 scopus 로고    scopus 로고
    • MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    • Lu, C. et al. (2006) MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res., 16, 1276-1288.
    • (2006) Genome Res. , vol.16 , pp. 1276-1288
    • Lu, C.1
  • 14
    • 84865425907 scopus 로고    scopus 로고
    • An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis
    • Luo, QJ. et al. (2012) An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis. Plant Mol. Biol., 80, 117-129.
    • (2012) Plant Mol. Biol. , vol.80 , pp. 117-129
    • Luo, Q.J.1
  • 15
    • 82755171888 scopus 로고    scopus 로고
    • The regulatory activities of plant microRNAs: A more dynamic perspective
    • Meng, Y. et al. (2011) The regulatory activities of plant microRNAs: a more dynamic perspective. Plant Physiol, 157, 1583-1595.
    • (2011) Plant Physiol , vol.157 , pp. 1583-1595
    • Meng, Y.1
  • 16
    • 34347355440 scopus 로고    scopus 로고
    • MiRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    • Molnar, A. et al. (2007) miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature, 447, 1126-1129.
    • (2007) Nature , vol.447 , pp. 1126-1129
    • Molnar, A.1
  • 17
    • 77953489252 scopus 로고    scopus 로고
    • Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    • Pantaleo, V. et al. (2010) Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J., 62, 960-976.
    • (2010) Plant J. , vol.62 , pp. 960-976
    • Pantaleo, V.1
  • 18
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • Rajagopalan, R et al. (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev., 20, 3407-3425.
    • (2006) Genes Dev. , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1
  • 19
    • 33750560215 scopus 로고    scopus 로고
    • Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis
    • Talmor-Neiman, M. et al. (2006) Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis. Plant J., 48, 511-521.
    • (2006) Plant J. , vol.48 , pp. 511-521
    • Talmor-Neiman, M.1
  • 20
    • 77951687828 scopus 로고    scopus 로고
    • Omics' analyses of regulatory networks in plant abiotic stress responses
    • Urano, K. et al. (2010) Omics' analyses of regulatory networks in plant abiotic stress responses. Curr. Opin. Plant Biol, 13, 132-138.
    • (2010) Curr. Opin. Plant Biol , vol.13 , pp. 132-138
    • Urano, K.1
  • 21
    • 80051564048 scopus 로고    scopus 로고
    • Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase
    • Wang, C. et al (2011) Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase. Physiol Plant., 143, 64-81.
    • (2011) Physiol Plant. , vol.143 , pp. 64-81
    • Wang, C.1
  • 22
    • 79959560701 scopus 로고    scopus 로고
    • A mutation degree model for the identification of transcriptional regulatory elements
    • Zhang, C et al (2011) A mutation degree model for the identification of transcriptional regulatory elements. BMC Bioinformatics, 12, 262.
    • (2011) BMC Bioinformatics , vol.12 , pp. 262
    • Zhang, C.1
  • 23
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.