Model organisms proteomics--from holobionts to human nutrition.

Proteomics

Volumn 13, Issue 17, 2013, Pages 2537-2541

  Tholey, Andreas ^a   Treitz, Christian ^b   Kussmann, Martin ^b   Bendixen, Emöke ^b   Schrimpf, Sabine P ^b   Hengartner, Michael O ^b  

^a UNIVERSITY OF KIEL   (Germany)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

ANIMAL; ANIMAL MODEL; BACTERIA; BIOLOGICAL MODEL; GENETICS; HUMAN; IMMUNOLOGY; INSECT; METABOLISM; MICROFLORA; NUTRITION; PLANT; PROCEDURES; PROTEOMICS;

ANIMALS; BACTERIA; HUMANS; INSECTS; MICROBIOTA; MODELS, ANIMAL; MODELS, BIOLOGICAL; NUTRITIONAL PHYSIOLOGICAL PHENOMENA; PLANTS; PROTEOME; PROTEOMICS;

EID: 84897360972     PISSN: None     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201370144     Document Type: Article

References (25)

1. Jones, A. M., Aebersold, R., Ahrens, C. H., Apweiler, R. et al., The HUPO initiative on Model Organism Proteomes, iMOP. Proteomics 2012, 12, 340–345.
2. Gilbert, S. F., Sapp, J., Tauber, A. I., A symbiotic view of life: we have never been individuals. Q. Rev. Biol. 2012, 87, 325–341.
3. Bosch, T. C., Understanding complex host‐microbe interactions in Hydra. Gut Microbes 2012, 3, 345–351.
4. Vickaryous, M. K., Hall, B. K., Human cell type diversity, evolution, development, and classification with special reference to cells derived from the neural crest. Biol. Rev. Camb. Philos. Soc. 2006, 81, 425–455.
5. Hatano, A., Chiba, H., Moesa, H. A., Taniguchi, T. et al., CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses. Database (Oxford) 2011, 2011, bar046.
6. Sears, C. L., A dynamic partnership: celebrating our gut flora. Anaerobe 2005, 11, 247–251.
7. Grice, E. A., Kong, H. H., Conlan, S., Deming, C. B. et al., Topographical and temporal diversity of the human skin microbiome. Science 2009, 324, 1190–1192.
8. Gevers, D., Knight, R., Petrosino, J. F., Huang, K. et al., The Human Microbiome Project: a community resource for the healthy human microbiome. PLoS Biol. 2012, 10, e100 1377.
9. Huttenhower, C., Gevers, D., Knight, R., Abubucker, S. et al., Structure, function and diversity of the healthy human microbiome. Nature 2012, 486, 207–214.
10. Santos, F., Moreno‐Paz, M., Meseguer, I., Lopez, C. et al., Metatranscriptomic analysis of extremely halophilic viral communities. ISME J. 2011, 5, 1621–1633.
11. Minot, S., Sinha, R., Chen, J., Li, H. et al., The human gut virome: inter‐individual variation and dynamic response to diet. Genome Res. 2011, 21, 1616–1625.
12. Wylie, K. M., Mihindukulasuriya, K. A., Sodergren, E., Weinstock, G. M., Storch, G. A., Sequence analysis of the human virome in febrile and afebrile children. PLoS One 2012, 7, e27735.
13. Fraune, S., Bosch, T. C., Long‐term maintenance of species‐specific bacterial mi‐crobiota in the basal metazoan Hydra. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 13146–13151.
14. Schrimpf, S. P., Hengartner, M. O., A worm rich in protein: quantitative, differential, and global proteomics in Caenorhabditis elegans. J. Proteomics 2010, 73, 2186–2197.
15. Labrousse, A., Chauvet, S., Couillault, C., Kurz, C. L., Ewbank, J. J., Caenorhab‐ditis elegans is a model host for Salmonella typhimurium. Curr. Biol. 2000, 10, 1543–1545.
16. Garsin, D. A., Sifri, C. D., Mylonakis, E., Qin, X. et al., A simple model host for identifying Gram‐positive virulence factors. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 10892–10897.
17. Kussmann, M., Fay, L. B., Nutrigenomics and personalized nutrition: science and concept. Pers. Med. 2008, 5, 447–455.
18. Kussmann, M., Affolter, M., Nagy, K., Holst, B., Fay, L. B., Mass spectrometry in nutrition: understanding dietary health effects at the molecular level. Mass Spectrom. Rev. 2007, 26, 727–750.
19. Kussmann, M., Raymond, F., Affolter, M., OMICS‐driven biomarker discovery in nutrition and health. J. Biotechnol. 2006, 124, 758–787.
20. German, J. B., Zivkovic, A. M., Dallas, D. C., Smilowitz, J. T., Nutrigenomics and personalized diets: What will they mean for food ? Annu. Rev. Food Sci. Technol. 2011, 2, 97–123.
21. Kussmann, M., Van Bladeren, P. J., The extended nutrigenomics—understanding the interplay between the genomes of food, gut microbes, and human host. Front Genet. 2011, 2, 21.
22. Casado, B., Affolter, M., Kussmann, M., OMICS‐rooted studies of milk proteins, oligosaccharides and lipids. J. Proteomics 2009, 73, 196–208.
23. Kussmann, M., Krause, L., Siffert, W., Nutrigenomics: where are we with genetic and epigenetic markers for disposition and susceptibility? Nutr. Rev. 2010, 68, S38–S47.
24. de Almeida, A. M., Bendixen, E., Pig proteomics: a review of a species in the crossroad between biomedical and food sciences. J. Proteomics 2012, 75, 4296–4314.
25. Soares, R., Franco, C., Pires, E., Ventosa, M. et al., Mass spectrometry and animal science: protein identification strategies and particularities of farm animal species. J. Proteomics 2012, 75, 4190–4206.