Cell lineage tracing in the developing enteric nervous system: Superstars revealed by experiment and simulation

Journal of the Royal Society Interface

Volumn 11, Issue 93, 2014, Pages

  Cheeseman, Bevan L ^a   Zhang, Dongcheng ^b   Binder, Benjamin J ^c   Newgreen, Donald F ^b   Landman, Kerry A ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b ROYAL CHILDREN'S HOSPITAL   (Australia)

^c UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

Cell lineage; Cell fate decisions; Enteric nervous system; Invasion wave

Indexed keywords

CELL PROLIFERATION; CELLS; EXPERIMENTS; STOCHASTIC MODELS; TOOLS;

BIOLOGICAL PROCESS; CELL LINEAGE; CELL-FATE; DATA ANALYSIS TOOL; MESENCHYMAL TISSUES; POPULATION EXPANSION; POPULATION LEVELS; PROLIFERATION RATE;

CYTOLOGY;

ANIMAL CELL; ARTICLE; CELL COUNT; CELL DIFFERENTIATION; CELL FATE; CELL LINEAGE; CELL LINEAGE TRACING; CELL PROLIFERATION; EMBRYO; ENTERIC NEURAL CREST; GROWTH RATE; INTESTINE INNERVATION; NEURAL CREST; NONHUMAN; POPULATION; PROCEDURES CONCERNING CELLS; PROGENY; SIMULATION; ANIMAL; BIOLOGICAL MODEL; CELL-FATE DECISIONS; CYTOLOGY; HUMAN; INVASION WAVE; MESODERM; PHYSIOLOGY; PRENATAL DEVELOPMENT; REVIEW;

CELL LINEAGE; CELL-FATE DECISIONS; ENTERIC NERVOUS SYSTEM; INVASION WAVE;

ANIMALS; CELL LINEAGE; ENTERIC NERVOUS SYSTEM; HUMANS; MESODERM; MODELS, NEUROLOGICAL; NEURAL CREST;

EID: 84896972365     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2013.0815     Document Type: Article

References (46)

1. Kretzschmar K, Watt FM. 2012 Lineage tracing. Cell 148, 33-45. (doi:10.1016/j.cell.2012.01.002)
2. Livet J, Weissman TA, Kang H, Draft RW, Lu J, Bennis RA, Sanes JR, Lichtman JW. 2007 Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 450, 56-62. (doi:10.1038/nature06293)
3. Lichtman JW, Livet J, Sanes JR. 2008 A technicolour approach to the connectome. Nat. Rev. Neurosci. 9, 417-422. (doi:10.1038/nrn2391)
4. Pan YA et al. 2013 Zebra bow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish. Development 140, 2835-2846. (doi:10.1242/dev.094631)
5. Naik SH, Perie L, Swart E, Gerlach C, van Rooij N, de Boer RJ, Schumacher TN. 2013 Diverse and heritable lineage imprinting of early haematopoietic progenitors. Nature 7444, 229-232. (doi:10.1038/nature12013)
6. Amat F, Keller PJ. 2013 Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy. Dev. Growth Differ. 4, 563-578. (doi:10.1111/dgd.12063)
7. Krzic U, Gunther S, Saunders TE, Streichan SJ, Hufnagel L. 2012 Multiview light-sheet microscope for rapid in to imaging. Nat. Methods 97, 730-733. (doi:10.1038/nmeth.2064)
8. Tomer R, Khairy K, Amat F, Keller PJ. 2012 Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy. Nat. Methods 9, 755-763. (doi:10.1038/nmeth.2062)
9. Olivier N et al. 2010 Cell lineage reconstruction of early zebrafish embryos using label-free non-linear microscopy. Science 329, 967-971. (doi:10.1126/science.1189428)
10. McMahon A, Supatto W, Fraser EF, Stathopoulos A. 2008 Dynamic analysis of Drosophila gastrulation provide insights into collective cell migration. Science 322, 1546-1550. (doi:10.1126/science.1167094)
11. Duffy KR, Hodgkin PD. 2012 Intracellular competition for fates in the immune system. Trends Cell Biol. 9, 457-464. (doi:10.1016/j.tcb.2012.05.004)
12. Duffy KR, Wellard CJ, Markham JF, Zhou JHS, Holmberg R, Hawkins ED, Hasbold J, Dowling MR, Hodgkin PD. 2012 Activation-induced B cell fates are selected by intracellular stochastic competition. Science 6066, 338-341. (doi:10.1126/science.1213230)
13. Furness JB. 2012 The enteric nervous system and neurogastroenterology. Nat. Rev. Gastroenterol. 9, 286-294. (doi:10.1038/nrgastro.2012.32)
14. Zhang D, Brinas IM, Binder BJ, Landman KA, Newgreen DF. 2010 Neural crest regionalisation for enteric nervous system formation: implications for Hirschsprung's disease and stem cell therapy. Dev. Biol. 339, 280-294. (doi:10.1016/j.ydbio.2009.12.014)
15. Binder BJ, Landman KA, Simpson MJ, Mariani M, Newgreen DF. 2008 Modeling proliferative tissue growth: a general approach and an avian case study. Phys. Rev. E 78, 031912. (doi:10.1103/PhysRevE.78.031912)
16. Binder BJ, Landman KA, Newgreen DF, Simkin JE, Takahashi Y, Zhang D. 2012 Spatial analysis of multi-species exclusion processes: application to neural crest cell migration in the embryonic gut. Bull. Math. Biol. 74, 474-490. (doi:10.1007/s11538-011-9703-z)
17. Hackett-Jones EJ, Landman KA, Newgreen DF, Zhang D. 2011 On the role of differential adhesion in gangliogenesis in the enteric nervous system. J. Theor. Biol. 287, 148-159. (doi:10.1016/j.jtbi.2011.07.013)
18. Binder BJ, Landman KA. 2009 Exclusion processes on a growing domain. J. Theor. Biol. 259, 541-551. (doi:10.1016/j.jtbi.2009.04.025)
19. Landman KA, Binder BJ, Newgreen DF. 2012 Modeling development and disease in our 'second' brain. Lect. Notes Comput. Sci. 7495, 405-414. (doi:10.1007/978-3-642-33350-7-42)
20. Lorenz MO. 1905 Methods of measuring the concentration of wealth. Publ. Am. Stat. Assoc. 70, 209-219. (doi:10.2307/2276207)
21. Gini C. 1912 Variabilitá e mutabilitá [Variability and Mutability], C. Cuppini, Bologna
22. Reprinted in Memorie di metodologica statistica (ed. E Pizetti, T Salvemini). Rome, Italy: Libreria Eredi Virgilio Veschi (1955). [In Italian]
23. Atkinson AB. 1970 On the measurement of inequality. J. Econ. Theory 2, 244-263. (doi:10.1016/0022-0531(70)90039-6)
24. Kotz S, Read CB, Johnson NL. 1983 Encyclopedia of statistical science. New York. NY: John Wiley and Sons.
25. Damgaard C, Weiner J. 2000 Describing inequality in plant size or fecundity. Ecology 81, 1139-1142. (doi:10.1890/0012-9658(2000)081[1139:DIIPSO]2. 0.CO;2)
26. Gastwirth JL. 1971 A general definition of the Lorenz curve. Econometrica 39, 1037-1039. (doi:10.2307/1909675)
27. Simkin JE, Zhang D, Rollo BN, Newgreen DF. 2013 Retinoic acid upregulates Ret and induces chain migration and population expansion in vagal neural crest cells to colonise the embryonic gut. PLoS ONE 8, e64077. (doi:10.1371/journal. pone.0064077)
28. Simpson MJ, Zhang DC, Mariani M, Landman KA, Newgreen DF. 2007 Cell proliferation drives neural crest cell invasion of the intestine. Dev. Biol. 302, 553-568. (doi:10.1016/j.ydbio.2006.10.017)
29. Nishiyam C, Uesaka T, Manabe T, Yonekura Y, Nagasawa T, Newgreen DF, Young HM, Enomoto H. 2012 Trans-mesenteric neural crest cells are the principal source of the colonic enteric nervous system. Nat. Neurosci. 15, 1211-1218. (doi:10.1038/nn.3184)
30. Hearn CJ, Young HM, Ciampoli D, Lomax AE, Newgreen D. 1999 Catenary cultures of embryonic gastrointestinal tract support organ morphogenesis, motility, neural crest cell migration, and cell differentiation. Dev. Dyn. 214, 239-247. (doi:10.1002/(SICI)1097-0177(199903)214:3, 239::AIDAJA7.3.0.CO;2-O)
31. Landman KA, Fernando AE, Zhang D, Newgreen DF. 2011 Building stable chains with motile agents: insights into the morphology of enteric neural crest cell migration. J. Theor. Biol. 276, 250-268. (doi:10.1016/j.jtbi.2011.01.043)
32. Simpson MJ, Merrifield A, Landman KA, Hughes BD. 2007 Simulating invasion with cellular automata. Phys. Rev. E 76, 021918. (doi:10.1103/PhysRevE.76. 021918)
33. Chalazonitis A, Gershon MD, Green LA. 2012 Cell death and the developing enteric nervous system. Neurochem. Int. 61, 839-847. (doi:10.1016/j.neuint.2012. 01.028)
34. Chowdhury D, Schadschneider A, Nishinari K. 2005 Physics of transport and traffic phenomena in biology: from molecular motors and cells to organisms. Phys. Life Rev. 2, 318-352. (doi:10.1016/j.plrev.2005.09.001)
35. Allan IJ, Newgreen DF. 1980 The origin and differentiation of enteric neurons of the intestine of the fowl embryo. Am. J. Anat. 157, 137-154. (doi:10.1002/aja.1001570203)
36. Young HM, Bergner AJ, Anderson RB, Enomoto H, Milbrandt J, Newgreen DF, Whitington PM. 2004 Dynamics of neural crest-derived cell migration in the embryonic mouse gut. Dev. Biol. 270, 455-473. (doi:10.1016/j.ydbio.2004.03.015)
37. Hatzikirou H, Brusch L, Schaller C, Simon M, Deutsch A. 2010 Prediction of traveling front behavior in a lattice - gas cellular automaton model for tumor invasion. Comput. Math. Appl. 59, 2326-2339. (doi:10.1016/j.camwa.2009.08. 041)
38. Simpson MJ, Landman KA, Hughes BD. 2010 Cell invasion with proliferation mechanisms motivated by time-lapse data. Physica A 18, 3779-3790. (doi:10.1016/j.physa.2010.05.020)
39. Murray JD. 2002 Mathematical biology I: an introduction, 3rd edn. Heidelberg, Germany: Springer.
40. Simpson MJ, Baker RE. 2011 Corrected mean-field models for spatially dependent advection - diffusion - reaction phenomena. Phys. Rev. E 83, 051922. (doi:10.1103/PhysRevE.83.51922)
41. Landman KA, Pettet G, Newgreen DF. 2003 Mathematical models of cell colonisation of uniformly growing domains. Bull. Math. Biol. 65, 235-262. (doi:10.1016/S0092-8240(02)00098-8)
42. Simpson MJ, Landman KA, Newgreen DF. 2006 Chemotactic and diffusive migration on a non-uniformly growing domain: numerical algorithm development and applications. J. Comput. Appl. Math. 19, 282-300. (doi:10.1016/j.cam.2005.05. 003)
43. Groot L. 2010 Carbon Lorenz curves. Resour. Energy Econ. 1, 45-64. (doi:10.1016/j.reseneeco.2009.07.001)
44. Das AK, Asundi J. 2012 Using the Gini index to measure the inequality in infrastructure services provided within an urban region. Int. J. Crit. Infrastruct. 8, 178-186. (doi:10.1504/IJCIS. 2012.049037)
45. Snippert HJ et al. 2010 Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells. Cell 143, 134-144. (doi:10.1016/j.cell.2010.09.016)
46. Buske P, Galle J, Barker N, Aust G, Clevers H, Loeffler M. 2011 A comprehensive model of the spatio-temporal stem cell and tissue organisation in the intestinal crypt. PLoS Comp. Biol. 7, e1001045. (doi:10.1371/journal.pcbi. 1001045)