-
1
-
-
78650225949
-
New insights into Prevotella diversity and medical microbiology
-
Alauzet, C., Marchandin, H. & Lozniewski, A. (2010). New insights into Prevotella diversity and medical microbiology. Future Microbiol 5, 1695-1718.
-
(2010)
Future Microbiol
, vol.5
, pp. 1695-1718
-
-
Alauzet, C.1
Marchandin, H.2
Lozniewski, A.3
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0028871858
-
Formation of 2-hydroxy-4-methylpentanoic acid from L-leucine by Clostridium butyricum
-
Butel, M.J., Rimbault, A., Khelifa, N., Campion, G., Szylit, O. & Rocchiccioli, F. (1995). Formation of 2-hydroxy-4-methylpentanoic acid from L-leucine by Clostridium butyricum. FEMS microbiology letters 132, 171-176.
-
(1995)
FEMS microbiology letters
, vol.132
, pp. 171-176
-
-
Butel, M.J.1
Rimbault, A.2
Khelifa, N.3
Campion, G.4
Szylit, O.5
Rocchiccioli, F.6
-
4
-
-
5444269195
-
Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae' (phylum Firmicutes)
-
Carlier, J-P., K'ouas, G., Bonne, I., Lozniewski, A. & Mory, F. (2004). Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae' (phylum Firmicutes). Int J Syst Evol Microbiol 54, 1611-1615.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1611-1615
-
-
Carlier, J.-P.1
K'ouas, G.2
Bonne, I.3
Lozniewski, A.4
Mory, F.5
-
5
-
-
34248194876
-
Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens
-
Carlier, J-P., K'ouas, G. & Han, X. Y. (2007). Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens. Int J Syst Evol Microbiol 57, 725-729.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 725-729
-
-
Carlier, J.-P.1
K'ouas, G.2
Han, X.Y.3
-
6
-
-
0028126829
-
The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
-
Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H. & Farrow, J. A. (1994). The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812-826.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
Farrow, J.A.9
-
7
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello, E. K., Lauber, C. L., Hamady, M., Fierer, N., Gordon, J. I. & Knight, R. (2009). Bacterial community variation in human body habitats across space and time. Science 326, 1694-1697.
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
Knight, R.6
-
8
-
-
35348961403
-
An ecological and evolutionary perspective on human-microbe mutualism and disease
-
Dethlefsen, L., McFall-Ngai, M. & Relman, D. A. (2007). An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 449, 811-818.
-
(2007)
Nature
, vol.449
, pp. 811-818
-
-
Dethlefsen, L.1
McFall-Ngai, M.2
Relman, D.A.3
-
9
-
-
70350692048
-
Clostridium lavalense sp. nov., a glycopeptide-resistant species isolated from human faeces
-
Domingo, M. C., Huletsky, A., Boissinot, M., Hélie, M. C., Bernal, A., Bernard, K. A., Grayson, M. L., Picard, F. J. & Bergeron, M. G. (2009). Clostridium lavalense sp. nov., a glycopeptide-resistant species isolated from human faeces. Int J Syst Evol Microbiol 59, 498-503.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 498-503
-
-
Domingo, M.C.1
Huletsky, A.2
Boissinot, M.3
Hélie, M.C.4
Bernal, A.5
Bernard, K.A.6
Grayson, M.L.7
Picard, F.J.8
Bergeron, M.G.9
-
10
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
11
-
-
0030762263
-
Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils
-
Felske, A., Rheims, H., Wolterink, A., Stackebrandt, E. & Akkermans, A. D. (1997). Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils. Microbiology 143, 2983-2989.
-
(1997)
Microbiology
, vol.143
, pp. 2983-2989
-
-
Felske, A.1
Rheims, H.2
Wolterink, A.3
Stackebrandt, E.4
Akkermans, A.D.5
-
12
-
-
0035960740
-
Applicability of rep-PCR fingerprinting for identification of Lactobacillus species
-
Gevers, D., Huys, G. & Swings, J. (2001). Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. FEMS Microbiol Lett 205, 31-36.
-
(2001)
FEMS Microbiol Lett
, vol.205
, pp. 31-36
-
-
Gevers, D.1
Huys, G.2
Swings, J.3
-
13
-
-
0018099415
-
Rapid method for distinction of gram-negative from gram-positive bacteria
-
Gregersen, T. (1978). Rapid method for distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
-
(1978)
Eur J Appl Microbiol Biotechnol
, vol.5
, pp. 123-127
-
-
Gregersen, T.1
-
14
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
15
-
-
37149022209
-
Review article: The role of butyrate on colonic function
-
Hamer, H. M., Jonkers, D., Venema, K., Vanhoutvin, S., Troost, F. J. & Brummer, R. J. (2008). Review article: the role of butyrate on colonic function. Aliment Pharmacol Ther 27, 104-119.
-
(2008)
Aliment Pharmacol Ther
, vol.27
, pp. 104-119
-
-
Hamer, H.M.1
Jonkers, D.2
Venema, K.3
Vanhoutvin, S.4
Troost, F.J.5
Brummer, R.J.6
-
16
-
-
0003535096
-
-
4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University
-
Holdeman, L. V., Cato, E. P. & Moore, W. E. C. (1977). Anaerobe Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University.
-
(1977)
Anaerobe Laboratory Manual
-
-
Holdeman, L.V.1
Cato, E.P.2
Moore, W.E.C.3
-
17
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
other authors
-
Huttenhower, C., Gevers, D., Knight, R., Abubucker, S., Badger, J. H., Chinwalla, A. T., Creasy, H. H., Earl, A. M., FitzGerald, M. G. & other authors (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
Huttenhower, C.1
Gevers, D.2
Knight, R.3
Abubucker, S.4
Badger, J.H.5
Chinwalla, A.T.6
Creasy, H.H.7
Earl, A.M.8
FitzGerald, M.G.9
-
18
-
-
0003518308
-
-
6th edn. Belmont, CA: Star Publishing
-
Jousimies-Somer, H., Summanen, P., Citron, D. M., Baron, E. J., Wexler, H. M. & Finegold, S. M. (2002). Wadsworth-KTL anaerobic bacteriology manual, 6th edn. Belmont, CA: Star Publishing.
-
(2002)
Wadsworth-KTL anaerobic bacteriology manual
-
-
Jousimies-Somer, H.1
Summanen, P.2
Citron, D.M.3
Baron, E.J.4
Wexler, H.M.5
Finegold, S.M.6
-
19
-
-
37448999779
-
Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man
-
other authors
-
Jumas-Bilak, E., Carlier, J. P., Jean-Pierre, H., Citron, D., Bernard, K., Damay, A., Gay, B., Teyssier, C., Campos, J. & other authors (2007). Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man. International journal of systematic and evolutionary microbiology 57, 2743-2748.
-
(2007)
International journal of systematic and evolutionary microbiology
, vol.57
, pp. 2743-2748
-
-
Jumas-Bilak, E.1
Carlier, J.P.2
Jean-Pierre, H.3
Citron, D.4
Bernard, K.5
Damay, A.6
Gay, B.7
Teyssier, C.8
Campos, J.9
-
20
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30, 3059-3066.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
21
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
22
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
Ley, R. E., Turnbaugh, P. J., Klein, S. & Gordon, J. I. (2006). Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022-1023.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
23
-
-
84861001724
-
Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition
-
other authors
-
Li, E., Hamm, C. M., Gulati, A. S., Sartor, R. B., Chen, H., Wu, X., Zhang, T., Rohlf, F. J., Zhu, W. & other authors (2012). Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition. PLoS ONE 7, e26284.
-
(2012)
PLoS ONE
, vol.7
-
-
Li, E.1
Hamm, C.M.2
Gulati, A.S.3
Sartor, R.B.4
Chen, H.5
Wu, X.6
Zhang, T.7
Rohlf, F.J.8
Zhu, W.9
-
24
-
-
84896813925
-
Expression of Bacteroides fragilis hemolysins in vivo and role of HlyBA in an intra-abdominal infection model
-
Lobo, L. A., Jenkins, A. L., Smith, J. C. & Rocha, E. R. (2013). Expression of Bacteroides fragilis hemolysins in vivo and role of HlyBA in an intra-abdominal infection model. Microbiologyopen 2, 326-337.
-
(2013)
Microbiologyopen
, vol.2
, pp. 326-337
-
-
Lobo, L.A.1
Jenkins, A.L.2
Smith, J.C.3
Rocha, E.R.4
-
25
-
-
83155173573
-
The use of rRNA gene sequence data in the classification and identification of prokaryotes
-
Ludwig, W., Glöckner, F. O. & Yilmaz, P. (2011). The use of rRNA gene sequence data in the classification and identification of prokaryotes. Methods Microbiol 38, 349-384.
-
(2011)
Methods Microbiol
, vol.38
, pp. 349-384
-
-
Ludwig, W.1
Glöckner, F.O.2
Yilmaz, P.3
-
26
-
-
0037804236
-
Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veillonella: Implications for phylogeny and taxonomy
-
Marchandin, H., Teyssier, C., Siméon De Buochberg, M., Jean-Pierre, H., Carriere, C. & Jumas-Bilak, E. (2003). Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veillonella: implications for phylogeny and taxonomy. Microbiology 149, 1493-1501.
-
(2003)
Microbiology
, vol.149
, pp. 1493-1501
-
-
Marchandin, H.1
Teyssier, C.2
De Siméon Buochberg, M.3
Jean-Pierre, H.4
Carriere, C.5
Jumas-Bilak, E.6
-
27
-
-
0035205334
-
Analysis of transcription of the Staphylococcus aureus aerobic class Ib and anaerobic class III ribonucleotide reductase genes in response to oxygen
-
Masalha, M., Borovok, I., Schreiber, R., Aharonowitz, Y. & Cohen, G. (2001). Analysis of transcription of the Staphylococcus aureus aerobic class Ib and anaerobic class III ribonucleotide reductase genes in response to oxygen. J Bacteriol 183, 7260-7272.
-
(2001)
J Bacteriol
, vol.183
, pp. 7260-7272
-
-
Masalha, M.1
Borovok, I.2
Schreiber, R.3
Aharonowitz, Y.4
Cohen, G.5
-
28
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography
-
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
29
-
-
33646167183
-
Clostridium asparagiforme sp. nov., isolated from a human faecal sample
-
Mohan, R., Namsolleck, P., Lawson, P. A., Osterhoff, M., Collins, M. D., Alpert, C. A. & Blaut, M. (2006). Clostridium asparagiforme sp. nov., isolated from a human faecal sample. Syst Appl Microbiol 29, 292-299.
-
(2006)
Syst Appl Microbiol
, vol.29
, pp. 292-299
-
-
Mohan, R.1
Namsolleck, P.2
Lawson, P.A.3
Osterhoff, M.4
Collins, M.D.5
Alpert, C.A.6
Blaut, M.7
-
30
-
-
84878961258
-
Gram-positive anaerobic cocci-commensals and opportunistic pathogens
-
Murphy, E. C. & Frick, I. M. (2013). Gram-positive anaerobic cocci-commensals and opportunistic pathogens. FEMS Microbiol Rev 37, 520-553.
-
(2013)
FEMS Microbiol Rev
, vol.37
, pp. 520-553
-
-
Murphy, E.C.1
Frick, I.M.2
-
31
-
-
77953646161
-
Diversity of 16S rRNA genes within individual prokaryotic genomes
-
other authors
-
Pei, A. Y., Oberdorf, W. E., Nossa, C. W., Agarwal, A., Chokshi, P., Gerz, E. A., Jin, Z., Lee, P., Yang, L. & other authors (2010). Diversity of 16S rRNA genes within individual prokaryotic genomes. Appl Environ Microbiol 76, 3886-3897.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3886-3897
-
-
Pei, A.Y.1
Oberdorf, W.E.2
Nossa, C.W.3
Agarwal, A.4
Chokshi, P.5
Gerz, E.A.6
Jin, Z.7
Lee, P.8
Yang, L.9
-
32
-
-
0029853148
-
WWW-query: An on-line retrieval system for biological sequence banks
-
Perrière, G. & Gouy, M. (1996). WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364-369.
-
(1996)
Biochimie
, vol.78
, pp. 364-369
-
-
Perrière, G.1
Gouy, M.2
-
33
-
-
0026020722
-
Clostridium xylanolyticum sp. nov. an anaerobic xylanolytic bacterium from decayed Pinus patula wood chips
-
Rogers, G. M. & Baecker, A. A. W. (1991). Clostridium xylanolyticum sp. nov. an anaerobic xylanolytic bacterium from decayed Pinus patula wood chips. Int J Syst Evol Microbiol 41, 140-143.
-
(1991)
Int J Syst Evol Microbiol
, vol.41
, pp. 140-143
-
-
Rogers, G.M.1
Baecker, A.A.W.2
-
34
-
-
0035989525
-
Reclassification of Bacteroides forsythus (Tanner et al., 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov
-
Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I. & Benno, Y. (2002). Reclassification of Bacteroides forsythus (Tanner et al., 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov. Int J Syst Evol Microbiol 52, 841-849.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 841-849
-
-
Sakamoto, M.1
Suzuki, M.2
Umeda, M.3
Ishikawa, I.4
Benno, Y.5
-
35
-
-
0037368962
-
Clostridium bolteae sp. nov., isolated from human sources
-
Song, Y., Liu, C., Molitoris, D. R., Tomzynski, T. J., Lawson, P. A., Collins, M. D. & Finegold, S. M. (2003). Clostridium bolteae sp. nov., isolated from human sources. Syst Appl Microbiol 26, 84-89.
-
(2003)
Syst Appl Microbiol
, vol.26
, pp. 84-89
-
-
Song, Y.1
Liu, C.2
Molitoris, D.R.3
Tomzynski, T.J.4
Lawson, P.A.5
Collins, M.D.6
Finegold, S.M.7
-
36
-
-
0035687308
-
Clostridium hathewayi sp. nov., from human faeces
-
Steer, T., Collins, M. D., Gibson, G. R., Hippe, H. & Lawson, P. A. (2001). Clostridium hathewayi sp. nov., from human faeces. Syst Appl Microbiol 24, 353-357.
-
(2001)
Syst Appl Microbiol
, vol.24
, pp. 353-357
-
-
Steer, T.1
Collins, M.D.2
Gibson, G.R.3
Hippe, H.4
Lawson, P.A.5
-
37
-
-
0022596102
-
Bacteroides forsythus sp. nov., a slow-growing, fusiform Bacteroides sp. from the human oral cavity
-
Tanner, A. C. R., Listgarten, M. A., Ebersole, J. L. & Strzempko, M. N. (1986). Bacteroides forsythus sp. nov., a slow-growing, fusiform Bacteroides sp. from the human oral cavity. Int J Syst Bacteriol 36, 213-221.
-
(1986)
Int J Syst Bacteriol
, vol.36
, pp. 213-221
-
-
Tanner, A.C.R.1
Listgarten, M.A.2
Ebersole, J.L.3
Strzempko, M.N.4
-
38
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
207-201, The Human Microbiome Project Consortium
-
The Human Microbiome Project Consortium (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-201.
-
(2012)
Nature
, vol.486
-
-
-
39
-
-
76849088617
-
Notes on the characterization of prokaryote strains for taxonomic purposes
-
Tindall, B. J., Rosselló-Móra, R., Busse, H. J., Ludwig, W. & Kämpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249-266.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 249-266
-
-
Tindall, B.J.1
Rosselló-Móra, R.2
Busse, H.J.3
Ludwig, W.4
Kämpfer, P.5
-
40
-
-
84874536596
-
The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses
-
Větrovský, T. & Baldrian, P. (2013). The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses. PLoS ONE 8, e57923.
-
(2013)
PLoS ONE
, vol.8
-
-
Větrovský, T.1
Baldrian, P.2
-
41
-
-
33746255251
-
Clostridium aldenense sp. nov. and Clostridium citroniae sp. nov. isolated from human clinical infections
-
Warren, Y. A., Tyrrell, K. L., Citron, D. M. & Goldstein, E. J. (2006). Clostridium aldenense sp. nov. and Clostridium citroniae sp. nov. isolated from human clinical infections. J Clin Microbiol 44, 2416-2422.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 2416-2422
-
-
Warren, Y.A.1
Tyrrell, K.L.2
Citron, D.M.3
Goldstein, E.J.4
-
42
-
-
52149085893
-
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
-
Yarza, P., Richter, M., Peplies, J., Euzeby, J., Amann, R., Schleifer, K. H., Ludwig, W., Glöckner, F. O. & Rosselló-Móra, R. (2008). The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31, 241-250.
-
(2008)
Syst Appl Microbiol
, vol.31
, pp. 241-250
-
-
Yarza, P.1
Richter, M.2
Peplies, J.3
Euzeby, J.4
Amann, R.5
Schleifer, K.H.6
Ludwig, W.7
Glöckner, F.O.8
Rosselló-Móra, R.9
|