Constructing the major biosynthesis pathways for amino acids in the brown planthopper, Nilaparvata lugens Stål (Hemiptera: Delphacidae), based on the transcriptome data

Insect Molecular Biology

Volumn 23, Issue 2, 2014, Pages 152-164

  Wan, P J ^a   Yang, L ^a   Wang, W X ^a   Fan, J M ^b   Fu, Q ^a   Li, G Q ^b  

^a CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

^b NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

amino acid; biosynthesis; enzyme; Nilaparvata lugens; symbiont

Indexed keywords

AMINO ACID; ENZYME; TRANSCRIPTOME;

ANIMAL; ARTICLE; BIOSYNTHESIS; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; FEMALE; GENETICS; GROWTH, DEVELOPMENT AND AGING; HEMIPTERA; MALE; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NILAPARVATA LUGENS; NUCLEOTIDE SEQUENCE; NYMPH; PHYSIOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SYMBIONT; SYMBIOSIS; YEAST;

AMINO ACID; BIOSYNTHESIS; ENZYME; NILAPARVATA LUGENS; SYMBIONT;

AMINO ACIDS; ANIMALS; EXPRESSED SEQUENCE TAGS; FEMALE; HEMIPTERA; MALE; MOLECULAR SEQUENCE DATA; NYMPH; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SYMBIOSIS; TRANSCRIPTOME; YEASTS;

EID: 84896792180     PISSN: 09621075     EISSN: 13652583     Source Type: Journal    
DOI: 10.1111/imb.12069     Document Type: Article

References (42)

1. Bass, C., Hebsgaard, M.B., and, Hughes, J., (2012) Genomic resources for the brown planthopper, Nilaparvata lugens: transcriptome pyrosequencing and microarray design. Insect Sci 19: 1-12.
2. Baumann, P., (2005) Biology bacteriocyte-associated endosymbionts of plant sapsucking insects. Annu Rev Microbiol 59: 155-189.
3. Catindig, J.L.A., Arida, G.S., Baehaki, S.E., Bentur, J.S., Cuong, L.Q., Norowi, M., et al. (2009) Situation of planthoppers on Asia. In Planthopper: New Threats to the Sustainability of Intensive Rice Production Systems in Asia (, Heong, K.L., and, Hardy, B., eds), pp. 191-220. International Rice Rsearch Institute, Los Banos, Philippines.
4. Chen, C.C., Cheng, L.L., and, Hou, R.F., (1981) Studies on the intracellular yeast-like symbiote in the brown planthopper, Nilaparvata lugens Stal. J Appl Entomol 92: 440-449.
5. Chen, Y.H., Bernal, C.C., Tan, J., Horgan, F.G., and, Fitzgerald, M.A., (2011) Planthopper 'adaptation' to resistant rice varieties: changes in amino acid composition over time. J Insect Physiol 57: 1375-1384.
6. Cheng, D., and, Hou, R., (2001) Histological observations on transovarial transmission of a yeast-like symbiote in Nilaparvata lugens Stal (Homoptera, Delphacidae). Tissue Cell 33: 273-279.
7. Cheng, J.A., (2009) Rice planthopper problems and relevant causes in China. In Planthopper: New Threats to the Sustainability of Intensive Rice Production Systems in Asia (, Heong, K.L., and, Hardy, B., eds), pp. 191-220. International Rice Rsearch Institute, Los Banos, Philippines.
8. Chino, M., Hayashi, H., and, Fukumorita, T., (1987) Chemical composition of rice phloem sap and its fluctuation. J Plant Nutr 10: 1651-1661.
9. Darriba, D., Taboada, G.L., Doallo, R., and, Posada, D., (2011) ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27: 1164-1165.
10. Das, Y.T., (1976) Some factors of resistance to Chilo-suppressalis in rice varieties. Entomol Exp Appl 20: 131-134.
11. Davis, J.J., and, Olsen, G.J., (2010) Modal codon usage: assessing the typical codon usage of a genome. Mol Biol Evol 27: 800-810.
12. Dong, S.Z., Pang, K., Bai, X., Yu, X.P., and, Hao, P.Y., (2011) Identification of two species of yeast-like symbiotes in the brown planthopper, Nilaparvata lugens. Curr Microbiol 62: 1133-1138.
13. Fu, Q., Zhang, Z.T., Hu, C., and, Lai, F.X., (2001a) The effects of high temperature on both yeast-like symbionts and amino acid requirements of Nilaparvata lugens. Acta Entomol Sin 44: 534-540.
14. Fu, Q., Zhang, Z.T., Hu, C., Zhu, Z.W., and, Lai, F.X., (2001b) Effects of dietary amino acids on free amino acid pools in the body and honeydew of the brown planthopper, Nilaparvata lugens. Chin J Rice Sci 15: 298-302.
15. Fukumorita, T., and, Chino, M., (1982) Sugar, amino acid and inorganic contents in rice phloem sap. Plant Cell Physiol 23: 273-283.
16. Grabherr, M.G., Haas, B.J., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotech 29: 644-652.
17. Grantham, R., Gautier, C., Gouy, M., Mercier, R., and, Pave, A., (1980) Codon catalog usage and the genome hypothesis. Nucleic Acids Res 8: r49-r62.
18. Hansen, A.K., and, Moran, N.A., (2011) Aphid genome expression reveals host-symbiont cooperation in the production of amino acids. Proc Natl Acad Sci U S A 108: 2849-2854.
19. Hayashi, H., and, Chino, M., (1990) Chemical composition of phloem sap from the uppermost internode of the rice plant. Plant Cell Physiol 31: 247-251.
20. Hirayama, C., and, Nakamura, M., (2002) Regulation of glutamine metabolism during the development of Bombyx mori larvae. Biochim Biophys Acta 1571: 131-137.
21. Hirayama, C., Saito, H., Konno, K., and, Shinbo, H., (1998) Purification and characterization of NADH-dependent glutamate synthase from the silkworm fat body (Bombyx mori). Insect Mol Biol 28: 473-482.
22. Koyama, K., (1985) Nutritional physiology of the brown rice planthopper, Nilaparvuta lugens Stal (Hemiptera: Delphacidae). II. Essential amino acids for nymphal development. Appl Entomol Zool 20: 424-430.
23. Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
24. Liu, S., Yang, B., Gu, J., Yao, X., Zhang, Y., Song, F., et al. (2008) Molecular cloning and characterization of a juvenile hormone esterase gene from brown planthopper, Nilaparvata lugens. J Insect Physiol 54: 1495-1502.
25. Pang, K., Dong, S.-Z., Hou, Y., Bian, Y.-L., Yang, K., and, Yu, X., (2012) Cultivation, identification and quantification of one species of yeast-like symbiotes, Candida, in the rice brown planthopper, Nilaparvata lugens. Insect Sci 19: 477-484.
26. Peng, X., Zha, W., He, R., Lu, T., Zhu, L., Han, B., et al. (2011) Pyrosequencing the midgut transcriptome of the brown planthopper, Nilaparvata lugens. Insect Mol Biol 20: 745-762.
27. Rozen, S., and, Skaletsky, H., (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
28. 15N]-labeled compounds and mass spectrometry. Insect Mol Biol 36: 614-622.
29. Scaraffia, P.Y., Zhang, Q., Thorson, K., Wysocki, V.H., and, Miesfeld, R.L., (2010) Differential ammonia metabolism in Aedes aegypti fat body and midgut tissues. J Insect Physiol 56: 1040-1049.
30. Sharp, P.M., and, Li, W.H., (1986) Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons. Nucleic Acids Res 14: 7737-7749.
31. Shigenobu, S., and, Wilson, A.C.C., (2011) Genomic revelations of a mutualism: the pea aphid and its obligate bacterial symbiont. Cell Mol Life Sci 68: 1297-1309.
32. Shinbo, H., Konno, K., and, Hirayama, C., (1997) The pathway of ammonia assimilation in the silkworm, Bombyx mori. J Insect Physiol 43: 959-964.
33. Sogawa, K., (1982) The rice brown planthopper: feeding physiology and host plant interactions. Annu Rev Entomol 27: 49-73.
34. Sogawa, K., and, Pathak, M.D., (1970) Mechanisms of brown planthopper resistance in Mudgo variety of rice (Hemiptera: Delphacidae). Appl Entomol Zool 5: 145-158.
35. Stamatakis, A., (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
36. Urrestarazu, L., Borell, C., and, Bhattacharjee, J., (1985) General and specific controls of lysine biosynthesis in Saccharomyces cerevisiae. Curr Genet 9: 341-344.
37. Velasco, A., Leguina, J., and, Lazcano, A., (2002) Molecular evolution of the lysine biosynthetic pathways. J Mol Evol 55: 445-449.
38. Wang, G.C., Fu, Q., Lai, F.X., Chen, M.X., Mou, R.X., and, Zhang, Z.T., (2005) Relationship between yeast-like symbiotes and amino acid requirements in the rice brown planthopper, Nilaparvata lugens Stal (Homoptera: Delphacidae). Acta Entomol Sin 48: 483-490.
39. Wilkinson, T., and, Ishikawa, H., (2001) On the functional significance of symbiotic microorganisms in the Homoptera: a comparative study of Acyrthosiphon pisum and Nilaparvata lugens. Physiol Entomol 26: 86-93.
40. Wilson, A.C.C., Ashton, P.D., Calevro, F., Charles, H., Colella, S., Febvay, G., et al. (2010) Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola. Insect Mol Biol 19: 249-258.
41. Xue, J., Bao, Y.Y., Li, B.L., Cheng, Y.B., Peng, Z.Y., Liu, H., et al. (2010) Transcriptome analysis of the brown planthopper Nilaparvata lugens. PLoS ONE 5: e14233.
42. Yang, L., Fu, Q., Hu, W., Li, F., and, Li, G., (2012) Transcriptome-based identification of enzymes involved in amino acid biosynthesis in the small brown planthopper, Laodelphax striatellus. Open Access Insect Physiol 4: 19-29.