Molecular engineering of fungal GH5 and GH26 beta-(1,4)-mannanases toward improvement of enzyme activity

PLoS ONE

Volumn 8, Issue 11, 2013, Pages

  Couturier, Marie ^a,b   Féliu, Julia ^a,b   Bozonnet, Sophie ^c,d,e   Roussel, Alain ^b   Berrin, Jean Guy ^a,b  

^a Centre International de Ressources Microbiennes Champignons Filamenteux   (France)

^b AIX MARSEILLE UNIVERSITY   (France)

^c UNIVERSITÉ DE TOULOUSE   (France)

^d UMR792 INGÉNIERIE DES SYSTÈMES BIOLOGIQUES ET DES PROCÉDÉS   (France)

^e CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BETA MANNOSIDASE; GALACTOMANNAN; MUTANT PROTEIN; PROTEIN MAN26A; PROTEIN MAN5A; UNCLASSIFIED DRUG;

AMINO ACID SUBSTITUTION; ARTICLE; CHEMICAL MUTAGENESIS; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ASSAY; ENZYME ENGINEERING; ENZYME KINETICS; ENZYME STRUCTURE; ENZYME SUBSTRATE; GENETIC VARIABILITY; HYDROLYSIS; MUTANT; NONHUMAN; PEPTIDE LIBRARY; PODOSPORA ANSERINA; PROTEIN EXPRESSION; PROTEIN FUNCTION; STRUCTURE ACTIVITY RELATION; YARROWIA LIPOLYTICA;

BETA-MANNOSIDASE; CATALYTIC DOMAIN; GLYCOSIDE HYDROLASES; MANNANS; YARROWIA;

EID: 84896738089     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0079800     Document Type: Article

References (33)

1. Wiedenhoeft AC, Miller RB (2005) Structure and Function of Wood. In: Rowell RM, editor. Handbook of wood chemistry and wood composites. CRC Press. 9-33.
2. Scheller HV, Ulvskov P (2010) Hemicelluloses. Annu Rev Plant Biol 61: 263-289.
3. Salmén L (2004) Micromechanical understanding of the cell-wall structure. C R Biol 327(9-10): 873-880.
4. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, et al. (2009) The Carbohydrate-Active enZyme database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res 37: 233-238.
5. The Carbohydrate-Active enZymes Database [www.cazy.org].
6. Sachslehner A, Foidl G, Foidl N, Gübitz G, Haltrich D (2000) Hydrolysis of isolated coffee mannan and coffee extract by mannanases of Sclerotium rolfsii. J Biotechnol 80: 127-134. (Pubitemid 30450146)
7. Montiel MD, Rodriguez J, Perez-Leblic MI, Hernandez M, Arias ME, et al. (1999) Screening of mannanases in actinomycetes and their potential application in the bleaching of pine Kraft pulps. Appl Microbiol Biotechnol 52: 240-245. (Pubitemid 29424521)
8. Do BC, Dang TT, Berrin JG, Haltrich D, To KA, et al. (2009) Cloning, expression in Pichia pastoris, and characterization of a thermostable GH5 mannan endo-1,4-β-mannosidase from Aspergillus niger BK01. Microb Cell Fact 8: 59.
9. Pham TA, Berrin JG, Record E, To KA, Sigoillot JC (2010) Hydrolysis of softwood by Aspergillus mannanase: role of a carbohydrate-binding module. J Biotechnol 148: 163-170.
10. Couturier M, Haon M, Coutinho P, Henrissat B, Lesage-Meessen, et al. (2011) Podospora anserina hemicellulases potentiate the Trichoderma reesei secretome for saccharification of lignocellulosic biomass. Appl Environ Microbiol 77(1): 237-246.
11. Chauhan PS, Puri N, Sharma P, Gupta N (2012) Mannanases: microbial sources, production, properties and potential biotechnological applications. Appl Microbiol Biotechnol 93(5): 1817-1830.
12. Merino ST, Cherry J (2007) Progress and challenges in enzyme development for biomass utilization. Adv Biochem Eng Biotechnol 108: 95-120. (Pubitemid 47434544)
13. Himmel EM, Picataggio SK (2008) Biomass Recalcitrance: Deconstructing the Plant Cell Wall for Bioenergy. In: Himmel EM, editor. Biomass Recalcitrance: Deconstructing the Plant Cell Wall for Bioenergy. Blackwell Publishing Ltd. 1-6.
14. Margeot A, Hahn-Hagerdal B, Edlund M, Slade R, Monot F (2009) New improvements for lignocellulosic ethanol. Curr Opin Biotechnol 20: 1-9.
15. Tailford LE, Ducros VM, Flint JE, Roberts SM, Morland C, et al. (2009) Understanding how diverse beta-mannanases recognize heterogeneous substrates. Biochemistry 48(29): 7009-7018.
16. Hekmat O, Lo Leggio L, Rosengren A, Kamarauskaite J, Kolenova K, et al. (2010) Rational engineering of mannosyl binding in the distal glycone subsites of Cellulomonas fimi endo-beta-1,4-mannanase: mannosyl binding promoted at subsite 22 and demoted at subsite 23. Biochemistry 49(23): 4884-4896.
17. Wang XJ, Peng YJ, Zhang LQ, Li AN, Li DC (2012) Directed evolution and structural prediction of cellobiohydrolase II from the thermophilic fungus Chaetomium thermophilum. Appl Microbiol Biotechnol 95(6): 1469-1478.
18. Heinzelman P, Snow CD, Wu I, Nguyen C, Villalobos A, et al. (2009) A family of thermostable fungal cellulases created by structure-guided recombination. Proc Natl Acad Sci USA 106(14): 5610-5615.
19. García-Ruiz E, Maté D, Ballesteros A, Martinez AT, Alcalde M (2010) Evolving thermostability in mutant libraries of ligninolytic oxidoreductases expressed in yeast. Microb Cell Fact 9: 17.
20. Song L, Siguier B, Dumon C, Bozonnet S, O'Donohue MJ (2012) Engineering better biomass-degrading ability into a GH11 xylanase using a directed evolution strategy. Biotechnol Biofuels 5(1): 3.
21. Lin L, Meng X, Liu P, Hong Y,Wu G, et al. (2009) Improved catalytic efficiency of endo-β-1,4-glucanase from Bacillus subtilis BME-15 by directed evolution. Appl Environ Microbiol 82: 671-679.
22. Andrews SR, Taylor EJ, Pell G, Vincent F, Ducros V, et al. (2004) The use of forced protein evolution to investigate and improve stability of family 10 xylanases. J Biol Chem 279(52): 54369-54379.
23. Navarro D, Couturier M, Silva GG, Berrin JG, Rouau X, et al. (2010) Automated assay for screening the enzymatic release of reducing sugars from micronized biomass. Microb Cell Fact 9: 58.
24. Couturier M, Roussel A, Rosengren A, Leone P, Stålbrand H, et al. (2013) Structural and biochemical analyses of glycoside hydrolase families 5 and 26 beta-(1,4)-mannanases from Podospora anserina reveal differences upon manno-oligosaccharides catalysis. J Biol Chem 288(20): 14624-14635.
25. Duquesne S, Bordes F, Fudalej F, Nicaud JM, Marty A (2012) The yeast Yarrowia lipolytica as a generic tool for molecular evolution of enzymes. Methods Mol Biol 861: 301-312.
26. Emond S, Montanier C, Nicaud JM, Marty A, Monsan P, et al. (2010) New efficient recombinant expression system to engineer Candida antartica lipase B. Appl Environ Microbiol 76(8): 2684-2687.
27. Liang C, Fioroni M, Rodríguez-Ropero F, Xue Y, Schwaneberg U, et al. (2011) Directed evolution of a thermophilic endoglucanase (Cel5A) into highly active Cel5A variants with an expanded temperature profile. J Biotechnol 154(1): 46-53.
28. Chen Y, Zhang B, Pei H, Lv J, Yang W, et al. (2012) Directed evolution of Penicillium janczewskii zalesk α-galactosidase toward enhanced activity and expression in Pichia pastoris. Appl Biochem Biotechnol 168(3): 638-650.
29. Boonvitthya N, Bozonnet S, Burapatana V, O'Donohue MJ, Chulalaksananukul W (2013) Comparison of the heterologous expression of Trichoderma reesei endoglucanase II and cellobiohydrolase II in the yeasts Pichia pastoris and Yarrowia lipolytica. Mol Biotechnol 54(2): 158-169.
30. Bordes F, Fudalej F, Dossat V, Nicaud JM, Marty A (2007) A new recombinant protein expression system for high-throughput screening in the yeast Yarrowia lipolytica. J Microbiol Meth 70(3): 493-502. (Pubitemid 47307372)
31. Nicaud JM, Madzak C, van den Broek P, Gysler C, Duboc P, et al. (2002) Protein expression and secretion in the yeast Yarrowia lipolytica. FEMS Yeast Res 2(3): 371-379.
32. Le Dall MT, Nicaud JM, Gaillardin C (1994) Multiple-copy integration in the yeast Yarrowia lipolytica. Curr Genet 26(1): 38-44.
33. Matsui I, Ishikawa K, Matsui E, Miyairi S, Fukui S, et al. (1991) Subsite structure of Saccharomycopsis alpha-amylase secreted from Saccharomyces cerevisiae. J Biochem 109: 566-569.