FBA-SimVis: Interactive visualization of constraint-based metabolic models

Bioinformatics

Volumn 25, Issue 20, 2009, Pages 2755-2757

  Grafahrend Belau, Eva ^a   Klukas, Christian ^a   Junker, Björn H ^a   Schreiber, Falk ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER ANALYSIS; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; COMPUTER SIMULATION; MATHEMATICAL MODEL; METABOLISM; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS;

COMPUTATIONAL BIOLOGY; INFORMATION STORAGE AND RETRIEVAL; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 70350029519     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp408     Document Type: Article

References (8)

1. Becker,S.A. et al. (2007) Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox. Nature Protocols, 2, 727-738.
2. Junker,B.H. et al. (2006) VANTED: A system for advanced data analysis and visualisation in the context of biological networks. BMC Bioinformatics, 7, 109.1-109.13.
3. Kauffman,K.J. et al. (2003) Advances in flux balance analysis. Curr. Opin. Biotechnol., 14, 491-496.
4. Klamt,S. et al. (2007) Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Syst. Biol., 1, 1-13.
5. Noack,S. et al. (2007) Visualizing regulatory interactions in metabolic networks. BMC Biol., 5, 46.1-46.17.
6. Reed,J.L. and Palsson,B.Ø. (2003) Thirteen years of building constraint-based in silico models of Escherichia coli. J. Bacteriol., 185, 2692-2699.
7. Schwarz, R. et al. (2007) Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics, 8, 313.1-313.10.
8. Varma,A. and Palsson,B.Ø. (1994) Review: Metabolic flux balancing: basic concepts, scientific and practical. Bio/Technology, 12 994-998.