-
1
-
-
84880920122
-
Bringing genome-wide association findings into clinical use
-
Manolio, T. A. Bringing genome-wide association findings into clinical use. Nature Rev. Genet. 14, 549-558 (2013).
-
(2013)
Nature Rev. Genet.
, vol.14
, pp. 549-558
-
-
Manolio, T.A.1
-
2
-
-
84887621906
-
Paneth cells as a site of origin for intestinal inflammation
-
Adolph, T. E. et al. Paneth cells as a site of origin for intestinal inflammation. Nature 503, 272-276 (2013).
-
(2013)
Nature
, vol.503
, pp. 272-276
-
-
Adolph, T.E.1
-
3
-
-
70949107842
-
Inflammatory bowel disease
-
Abraham, C. & Cho, J. H. Inflammatory bowel disease. N. Engl. J. Med. 361, 2066-2078 (2009).
-
(2009)
N. Engl. J. Med.
, vol.361
, pp. 2066-2078
-
-
Abraham, C.1
Cho, J.H.2
-
4
-
-
84867745122
-
Common alleles that influence autophagy and the risk for inflammatory bowel disease
-
Gardet, A. & Xavier, R. J. Common alleles that influence autophagy and the risk for inflammatory bowel disease. Curr. Opin. Immunol. 24, 522-529 (2012).
-
(2012)
Curr. Opin. Immunol.
, vol.24
, pp. 522-529
-
-
Gardet, A.1
Xavier, R.J.2
-
5
-
-
50249086073
-
XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease
-
Kaser, A. et al. XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease. Cell 134, 743-756 (2008).
-
(2008)
Cell
, vol.134
, pp. 743-756
-
-
Kaser, A.1
-
6
-
-
72549095406
-
Regulation mechanisms and signaling pathways of autophagy
-
He, C. & Klionsky, D. J. Regulation mechanisms and signaling pathways of autophagy. Annu. Rev. Genet. 43, 67-93 (2009).
-
(2009)
Annu. Rev. Genet.
, vol.43
, pp. 67-93
-
-
He, C.1
Klionsky, D.J.2
-
7
-
-
84877610008
-
Bacterial subversion of host innate immune pathways
-
Baxt, L. A., Garza-Mayers, A. C.&Goldberg, M. B. Bacterial subversion of host innate immune pathways. Science 340, 697-701 (2013).
-
(2013)
Science
, vol.340
, pp. 697-701
-
-
Baxt, L.A.1
Garza-Mayers, A.C.2
Goldberg, M.B.3
-
8
-
-
33846627302
-
A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
-
Hampe, J. et al. A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1. Nature Genet. 39, 207-211 (2007).
-
(2007)
Nature Genet.
, vol.39
, pp. 207-211
-
-
Hampe, J.1
-
9
-
-
56249090667
-
Loss of the autophagy protein Atg16L1 enhances endotoxininduced IL-1b production
-
Saitoh, T. et al. Loss of the autophagy protein Atg16L1 enhances endotoxininduced IL-1b production. Nature 456, 264-268 (2008).
-
(2008)
Nature
, vol.456
, pp. 264-268
-
-
Saitoh, T.1
-
10
-
-
56249135538
-
A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells
-
Cadwell, K. et al. A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells. Nature 456, 259-263 (2008).
-
(2008)
Nature
, vol.456
, pp. 259-263
-
-
Cadwell, K.1
-
11
-
-
77953904042
-
Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine
-
Cadwell, K. et al. Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine. Cell 141, 1135-1145 (2010).
-
(2010)
Cell
, vol.141
, pp. 1135-1145
-
-
Cadwell, K.1
-
12
-
-
73849151394
-
NOD2 stimulation induces autophagy in dendritic cells influencing bacterial handling and antigen presentation
-
Cooney, R. et al. NOD2 stimulation induces autophagy in dendritic cells influencing bacterial handling and antigen presentation. Nature Med. 16, 90-97 (2010).
-
(2010)
Nature Med.
, vol.16
, pp. 90-97
-
-
Cooney, R.1
-
13
-
-
70450248450
-
Differential involvement of Atg16L1 in Crohn disease and canonical autophagy: Analysis of the organization of the Atg16L1 complex in fibroblasts
-
Fujita, N. et al. Differential involvement of Atg16L1 in Crohn disease and canonical autophagy: analysis of the organization of the Atg16L1 complex in fibroblasts. J. Biol. Chem. 284, 32602-32609 (2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 32602-32609
-
-
Fujita, N.1
-
14
-
-
84878756142
-
The Crohn's disease: Associated ATG16L1 variant and Salmonella invasion
-
Messer, J. S. et al. The Crohn's disease: associated ATG16L1 variant and Salmonella invasion. BMJ Open 3, e002790 (2013).
-
(2013)
BMJ Open
, vol.3
-
-
Messer, J.S.1
-
15
-
-
84887524897
-
The protein ATG16L1 suppresses inflammatory cytokines induced by the intracellular sensors Nod1 and Nod2 in an autophagyindependent manner
-
Sorbara, M. T. et al. The protein ATG16L1 suppresses inflammatory cytokines induced by the intracellular sensors Nod1 and Nod2 in an autophagyindependent manner. Immunity 39, 858-873 (2013).
-
(2013)
Immunity
, vol.39
, pp. 858-873
-
-
Sorbara, M.T.1
-
16
-
-
84888223618
-
Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection
-
Conway, K. L. et al. Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection. Gastroenterology 145, 1347-1357 (2013).
-
(2013)
Gastroenterology
, vol.145
, pp. 1347-1357
-
-
Conway, K.L.1
-
17
-
-
0034283578
-
Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1, 3, 6, 7 and 8
-
Stennicke, H. R., Renatus, M., Meldal, M. & Salvesen, G. S. Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1, 3, 6, 7 and 8. Biochem. J. 350, 563-568 (2000).
-
(2000)
Biochem. J.
, vol.350
, pp. 563-568
-
-
Stennicke, H.R.1
Renatus, M.2
Meldal, M.3
Salvesen, G.S.4
-
18
-
-
84859426282
-
MEROPS: The database of proteolytic enzymes, their substrates and inhibitors
-
Rawlings, N. D., Barrett, A. J. & Bateman, A. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res. 40, D343-D350 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Rawlings, N.D.1
Barrett, A.J.2
Bateman, A.3
-
19
-
-
38049119903
-
Overlappingcleavagemotif selectivity of caspases: Implications for analysis of apoptotic pathways
-
McStay, G. P., Salvesen, G. S.&Green, D. R.Overlappingcleavagemotif selectivity of caspases: implications for analysis of apoptotic pathways. Cell Death Differ. 15, 322-331 (2008).
-
(2008)
Cell Death Differ
, vol.15
, pp. 322-331
-
-
McStay, G.P.1
Salvesen, G.S.2
Green, D.R.3
-
20
-
-
69249208481
-
XIAP discriminates between type i and type II FAS-induced apoptosis
-
Jost, P. J. et al. XIAP discriminates between type I and type II FAS-induced apoptosis. Nature 460, 1035-1039 (2009).
-
(2009)
Nature
, vol.460
, pp. 1035-1039
-
-
Jost, P.J.1
-
21
-
-
84877323647
-
Regulation of nutrientsensitive autophagy by uncoordinated 51-like kinases 1 and 2
-
McAlpine, F., Williamson, L. E., Tooze, S. A. & Chan, E. Y. Regulation of nutrientsensitive autophagy by uncoordinated 51-like kinases 1 and 2. Autophagy 9, 361-373 (2013).
-
(2013)
Autophagy
, vol.9
, pp. 361-373
-
-
McAlpine, F.1
Williamson, L.E.2
Tooze, S.A.3
Chan, E.Y.4
-
22
-
-
75749122303
-
Methods in mammalian autophagy research
-
Mizushima, N., Yoshimori, T. & Levine, B. Methods in mammalian autophagy research. Cell 140, 313-326 (2010).
-
(2010)
Cell
, vol.140
, pp. 313-326
-
-
Mizushima, N.1
Yoshimori, T.2
Levine, B.3
-
23
-
-
84862295360
-
Guidelines for the use and interpretation of assays for monitoring autophagy
-
Klionsky, D. J. et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8, 445-544 (2012).
-
(2012)
Autophagy
, vol.8
, pp. 445-544
-
-
Klionsky, D.J.1
-
24
-
-
0033520463
-
The mitochondrial apoptotic pathway is activated by serum and glucose deprivation in cardiac myocytes
-
Bialik, S. et al. The mitochondrial apoptotic pathway is activated by serum and glucose deprivation in cardiac myocytes. Circ. Res. 85, 403-414 (1999).
-
(1999)
Circ. Res.
, vol.85
, pp. 403-414
-
-
Bialik, S.1
-
25
-
-
77954656984
-
Glucose deprivation induces an atypical form of apoptosis mediated by caspase-8 in Bax-Bak-deficient cells
-
Caro-Maldonado, A. et al. Glucose deprivation induces an atypical form of apoptosis mediated by caspase-8 in Bax-, Bak-deficient cells. Cell Death Differ. 17, 1335-1344 (2010).
-
(2010)
Cell Death Differ
, vol.17
, pp. 1335-1344
-
-
Caro-Maldonado, A.1
-
27
-
-
54849421128
-
Impaired autophagy of an intracellular pathogen induced by a Crohn's disease associated ATG16L1 variant
-
Kuballa, P., Huett, A., Rioux, J. D., Daly, M. J.& Xavier, R. J. Impaired autophagy of an intracellular pathogen induced by a Crohn's disease associated ATG16L1 variant. PLoS ONE 3, e3391 (2008).
-
(2008)
PLoS ONE
, vol.3
-
-
Kuballa, P.1
Huett, A.2
Rioux, J.D.3
Daly, M.J.4
Xavier, R.J.5
-
28
-
-
77956331627
-
Integrating common and rare genetic variation in diverse human populations
-
Altshuler, D. M. et al. Integrating common and rare genetic variation in diverse human populations. Nature 467, 52-58 (2010).
-
(2010)
Nature
, vol.467
, pp. 52-58
-
-
Altshuler, D.M.1
-
29
-
-
39849109338
-
Autophagy fights disease through cellular self-digestion
-
Mizushima, N., Levine, B., Cuervo, A. M. & Klionsky, D. J. Autophagy fights disease through cellular self-digestion. Nature 451, 1069-1075 (2008).
-
(2008)
Nature
, vol.451
, pp. 1069-1075
-
-
Mizushima, N.1
Levine, B.2
Cuervo, A.M.3
Klionsky, D.J.4
-
30
-
-
84877628647
-
Autophagy in human health and disease
-
Choi, A. M., Ryter, S. W. & Levine, B. Autophagy in human health and disease. N. Engl. J. Med. 368, 651-662 (2013).
-
(2013)
N. Engl. J. Med.
, vol.368
, pp. 651-662
-
-
Choi, A.M.1
Ryter, S.W.2
Levine, B.3
-
31
-
-
84868336049
-
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
-
Jostins, L. et al. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature 491, 119-124 (2012).
-
(2012)
Nature
, vol.491
, pp. 119-124
-
-
Jostins, L.1
-
32
-
-
84879402478
-
The role of the immune system in governing host-microbe interactions in the intestine
-
Brown, E. M., Sadarangani, M. & Finlay, B. B. The role of the immune system in governing host-microbe interactions in the intestine. Nature Immunol. 14, 660-667 (2013).
-
(2013)
Nature Immunol.
, vol.14
, pp. 660-667
-
-
Brown, E.M.1
Sadarangani, M.2
Finlay, B.B.3
-
33
-
-
39749115051
-
Chronic enteric Salmonella infection in mice leads to severe and persistent intestinal fibrosis
-
Grassl, G. A., Valdez, Y., Bergstrom, K. S., Vallance, B. A. & Finlay, B. B. Chronic enteric Salmonella infection in mice leads to severe and persistent intestinal fibrosis. Gastroenterology 134, 768-780 (2008).
-
(2008)
Gastroenterology
, vol.134
, pp. 768-780
-
-
Grassl, G.A.1
Valdez, Y.2
Bergstrom, K.S.3
Vallance, B.A.4
Finlay, B.B.5
-
34
-
-
0035845542
-
A role for IL-1a in inducing pathologic inflammation during bacterial infection
-
Dube, P. H., Revell, P. A., Chaplin, D. D., Lorenz, R. G. & Miller, V. L. A role for IL-1a in inducing pathologic inflammation during bacterial infection. Proc. Natl Acad. Sci. USA 98, 10880-10885 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10880-10885
-
-
Dube, P.H.1
Revell, P.A.2
Chaplin, D.D.3
Lorenz, R.G.4
Miller, V.L.5
-
35
-
-
34247566585
-
A nonsynonymous SNP in ATG16L1 predisposes to ileal Crohn's disease and is independent of CARD15 and IBD5
-
Prescott, N. J. et al. A nonsynonymous SNP in ATG16L1 predisposes to ileal Crohn's disease and is independent of CARD15 and IBD5. Gastroenterology 132, 1665-1671 (2007).
-
(2007)
Gastroenterology
, vol.132
, pp. 1665-1671
-
-
Prescott, N.J.1
-
36
-
-
0030730859
-
Yersinia enterocolitica induces apoptosis in macrophages by a process requiring functional type III secretion and translocation mechanisms and involving YopP, presumably acting as an effector protein
-
Mills, S. D. et al. Yersinia enterocolitica induces apoptosis in macrophages by a process requiring functional type III secretion and translocation mechanisms and involving YopP, presumably acting as an effector protein. Proc. Natl Acad. Sci. USA 94, 12638-12643 (1997).
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 12638-12643
-
-
Mills, S.D.1
-
37
-
-
9244251566
-
Yersinia enterocolitica induces apoptosis and inhibits surface molecule expression and cytokine production in murine dendritic cells
-
Erfurth, S. E. et al. Yersinia enterocolitica induces apoptosis and inhibits surface molecule expression and cytokine production in murine dendritic cells. Infect. Immun. 72, 7045-7054 (2004).
-
(2004)
Infect. Immun.
, vol.72
, pp. 7045-7054
-
-
Erfurth, S.E.1
-
38
-
-
0035827710
-
Yersinia enterocolitica YopP-induced apoptosis of macrophages involves the apoptotic signaling cascade upstream of bid
-
Denecker, G. et al. Yersinia enterocolitica YopP-induced apoptosis of macrophages involves the apoptotic signaling cascade upstream of bid. J. Biol. Chem. 276, 19706-19714 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19706-19714
-
-
Denecker, G.1
-
39
-
-
79951642032
-
Autophagy proteins regulate innate immune responses by inhibiting the release of mitochondrial DNA mediated by the NALP3 inflammasome
-
Nakahira, K. et al. Autophagy proteins regulate innate immune responses by inhibiting the release of mitochondrial DNA mediated by the NALP3 inflammasome. Nature Immunol. 12, 222-230 (2011).
-
(2011)
Nature Immunol.
, vol.12
, pp. 222-230
-
-
Nakahira, K.1
-
40
-
-
84857195479
-
Activation of autophagy by inflammatory signals limits IL-1b production by targeting ubiquitinated inflammasomes for destruction
-
Shi, C. S. et al. Activation of autophagy by inflammatory signals limits IL-1b production by targeting ubiquitinated inflammasomes for destruction. Nature Immunol. 13, 255-263 (2012).
-
(2012)
Nature Immunol.
, vol.13
, pp. 255-263
-
-
Shi, C.S.1
-
41
-
-
84882369710
-
A deficiency in the autophagy gene Atg16L1 enhances resistance to enteric bacterial infection
-
Marchiando, A. M. et al. A deficiency in the autophagy gene Atg16L1 enhances resistance to enteric bacterial infection. Cell Host Microbe 14, 216-224 (2013).
-
(2013)
Cell Host Microbe
, vol.14
, pp. 216-224
-
-
Marchiando, A.M.1
-
42
-
-
0033177995
-
Conditional gene targeting in macrophages and granulocytes using LysMcre mice
-
Clausen, B. E., Burkhardt, C., Reith, W., Renkawitz, R. & Forster, I. Conditional gene targeting in macrophages and granulocytes using LysMcre mice. Transgenic Res. 8, 265-277 (1999).
-
(1999)
Transgenic Res.
, vol.8
, pp. 265-277
-
-
Clausen, B.E.1
Burkhardt, C.2
Reith, W.3
Renkawitz, R.4
Forster, I.5
-
43
-
-
0029956641
-
Decreased apoptosis in the brain and premature lethality inCPP32-deficient mice
-
Kuida, K. et al. Decreased apoptosis in the brain and premature lethality inCPP32-deficient mice. Nature 384, 368-372 (1996).
-
(1996)
Nature
, vol.384
, pp. 368-372
-
-
Kuida, K.1
-
44
-
-
48349136889
-
Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease
-
Barrett, J. C. et al. Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. Nature Genet. 40, 955-962 (2008).
-
(2008)
Nature Genet.
, vol.40
, pp. 955-962
-
-
Barrett, J.C.1
-
45
-
-
33645318751
-
Quantitative production of macrophages or neutrophils ex vivo using conditional Hoxb8
-
Wang, G. G. et al. Quantitative production of macrophages or neutrophils ex vivo using conditional Hoxb8. Nature Methods 3, 287-293 (2006).
-
(2006)
Nature Methods
, vol.3
, pp. 287-293
-
-
Wang, G.G.1
-
46
-
-
80052382157
-
Simultaneous assessment of autophagy and apoptosis usingmultispectral imaging cytometry
-
de la Calle, C., Joubert, P.-E., Law, H. K. W., Hasan, M. & Albert, M. Simultaneous assessment of autophagy and apoptosis usingmultispectral imaging cytometry. Autophagy 7, 1045-1051 (2011).
-
(2011)
Autophagy
, vol.7
, pp. 1045-1051
-
-
De La Calle, C.1
Joubert, P.-E.2
Law, H.K.W.3
Hasan, M.4
Albert, M.5
|